🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jeremy L. Muhlich

Harvard University

ORCID: 0000-0002-0811-637X

Also affiliated with Center for Systems Biology

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and MicrobiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.3Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data

eLife(2021)10.7554/elife.57116
Top 8%
2.8DataRank
Top 8%90 citations

John A. Bachman, Jeremy L. Muhlich, Timothy J. Mitchison, Kaoru Shimada

Papers

Driven by 15 papers — median percentile 77. Top paper: “shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data”.

shinyDepMap, a tool to identify targetable cancer genes and their functional connections from Cancer Dependency Map data

eLife(2021)10.7554/elife.57116
Top 8%
2.8DataRank
Top 8%90 citations

John A. Bachman, Jeremy L. Muhlich, Timothy J. Mitchison, Kaoru Shimada

MITI minimum information guidelines for highly multiplexed tissue images

Nature Methods(2022)10.1038/s41592-022-01415-4
N/A
1.7DataRank · unranked
88 citations

Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar +95 more

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging

Nature Methods(2021)10.1038/s41592-021-01308-y
N/A
0.827DataRank · unranked
247 citations

Artem Sokolov, Clarence Yapp, Yu‐An Chen, Jeremy L. Muhlich, Joshua M. Hess +22 more

Visinity: Visual Spatial Neighborhood Analysis for Multiplexed Tissue Imaging Data

IEEE Transactions on Visualization and Computer Graphics(2022)10.1109/tvcg.2022.3209378
N/A
0.798DataRank · unranked
22 citations

Robert Krueger, Ajit J. Nirmal, Giorgio Gaglia, J. M. Jessup, Cecily C. Ritch +8 more

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435473
N/A
0.568DataRank · unranked
43 citations

Artem Sokolov, Clarence Yapp, Jeremy L. Muhlich, Joshua M. Hess, Jia‐Ren Lin +16 more

piNET: a versatile web platform for downstream analysis and visualization of proteomics data

Nucleic Acids Research(2020)10.1093/nar/gkaa436
N/A
0.500DataRank · unranked
27 citations

Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel Najafabadi, Wen Niu, Chuming Chen +17 more

Online narrative guides for illuminating tissue atlas data and digital pathology images

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.27.001834
Top 39%
0.497DataRank
Top 39%10 citations

Yu‐An Chen, John Hoffer, Jeremy L. Muhlich, Jia‐Ren Lin, Robert Krueger +5 more

Quality Control for Single Cell Analysis of High-plex Tissue Profiles using CyLinter

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565120
N/A
0.269DataRank · unranked
5 citations

Edward Novikov, Ziyuan Zhao, Tuulia Vallius, Janae Davis, Jia‐Ren Lin +6 more

SEAL: Spatially-resolved Embedding Analysis with Linked Imaging Data

IEEE Transactions on Visualization and Computer Graphics(2025)10.1109/tvcg.2025.3634794
N/A
0DataRank · unranked
0 citations

Grace Guo, Johannes Knittel, Dan Freeman, Usha Bhalla, Jeremy L. Muhlich +3 more

Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR

Bioinformatics(2022)10.1093/bioinformatics/btac544
N/A
0DataRank · unranked
135 citations

Yu‐An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K. Sorger +1 more

Addressing persistent challenges in digital image analysis of cancerous tissues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.21.548450
N/A
0DataRank · unranked
5 citations

Clarence Yapp, Gregory J. Baker, Johanna Beyer, Young Hwan Chang, Allison Creason +13 more

psudo: Exploring Multi‐Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring

Computer Graphics Forum(2024)10.1111/cgf.15103
N/A
0DataRank · unranked
2 citations

Jakob Troidl, Jeremy L. Muhlich, Robert Krueger, J. A. Hoffer, Tica Lin +5 more

psudo: Exploring Multi-Channel Biomedical Image Data with Spatially and Perceptually Optimized Pseudocoloring

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.11.589087
N/A
0DataRank · unranked
0 citations

Jakob Troidl, Jeremy L. Muhlich, Robert Krueger, John Hoffer, Tica Lin +5 more

Addressing persistent challenges in digital image analysis of cancer tissue: resources developed from a hackathon

Molecular Oncology(2025)10.1002/1878-0261.13783
N/A
0DataRank · unranked
0 citations

Clarence Yapp, Gregory J. Baker, Johanna Beyer, Young Hwan Chang, Allison Creason +12 more

Minerva: a light-weight, narrative image browser for multiplexed tissue images

The Journal of Open Source Software(2020)10.21105/joss.02579
N/A
0DataRank · unranked
39 citations

Rumana Rashid, Jeremy L. Muhlich, Yu‐An Chen, Douglas Russell, Juha Ruokonen +5 more