Keith A. Crandall

Also affiliated with Milken Institute, George Washington University, International Union for Conservation of Nature, Oulu University of Applied Sciences, University of Oulu

Environmental ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.495Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa236

Top 39%

0.495DataRank

Top 39%6 citations

Bashir ‎Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts +5 more

Papers

Driven by 33 papers — median percentile 31. Top paper: “The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View”.

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Trends in cancer(2020)10.1016/j.trecan.2020.01.004

N/A

6.0DataRank · unranked

268 citations

Vincent B. Young, Joseph D. Skufca, Fiona Ginty, Traci L. Testerman, Alexander T. Pearson +25 more

Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

Systematic Biology(2021)10.1093/sysbio/syab063

N/A

1.9DataRank · unranked

85 citations

Céline Scornavacca, Mao Fujimoto, Paul Bodily, Mark Clement, Keith A. Crandall +4 more

MODELTEST: testing the model of DNA substitution.

Bioinformatics(1998)10.1093/bioinformatics/14.9.817

N/A

1.5DataRank · unranked

20074 citations

K. A. Crandall, David Posada, Keith A. Crandall, D. Posada

TCS: a computer program to estimate gene genealogies

Molecular Ecology(2000)10.1046/j.1365-294x.2000.01020.x

N/A

1.4DataRank · unranked

9914 citations

D. Posada, K. A. Crandall, Mark Clement, David Posada, Keith A. Crandall +1 more

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa236

Top 39%

0.495DataRank

Top 39%6 citations

Bashir ‎Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts +5 more

Pediatric urinary tract infections caused by poultry-associated Escherichia coli

Microbiology Spectrum(2024)10.1128/spectrum.03415-23

N/A

0.412DataRank · unranked

11 citations

Gregg S. Davis, Daniel E. Park, Azza H. Idris, Sanjeev Sariya, Yashan Wang +13 more

Microbial metabolite ammonia disrupts TGF-β signaling to promote colon cancer

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108559

N/A

0.227DataRank · unranked

3 citations

Xiaochun Yang, Taj Mohammad, Xiyan Xiang, Christine L. Sardo Molmenti, Bibhuti Mishra +6 more

Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

Viruses(2020)10.3390/v12090956

N/A

0DataRank · unranked

38 citations

Matthew L. Bendall, Alexander T. Pearson, Doru Paul, Douglas F. Nixon, Marcos Pérez‐Losada +2 more

Consumption of Diet Soda Sweetened with Sucralose and Acesulfame‐Potassium Alters Inflammatory Transcriptome Pathways in Females with Overweight and Obesity

Molecular Nutrition & Food Research(2020)10.1002/mnfr.201901166

N/A

0DataRank · unranked

34 citations

Sabyasachi Sen, Patrick Merkel, Fiona J. Dore, David Stern, Curtis J. Henry +6 more

HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations

Molecular Biology and Evolution(2020)10.1093/molbev/msaa315

N/A

0DataRank · unranked

18 citations

Keylie M. Gibson, Margaret C. Steiner, Uzma Rentia, Marcos Pérez‐Losada, Keith A. Crandall +1 more

Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.25.172619

N/A

0DataRank · unranked

14 citations

Céline Scornavacca, Mao Fujimoto, Paul Bodily, Mark Clement, Keith A. Crandall +4 more

Associations between HIV infection and clinical spectrum of COVID-19: a population level analysis based on US National COVID Cohort Collaborative (N3C) data

The Lancet HIV(2021)10.1016/s2352-3018(21)00239-3

N/A

0DataRank · unranked

165 citations

Jing Sun, Rena C. Patel, Jiajia Zhang, Siyuan Guo, Qulu Zheng +20 more

Airway microbial diversity is decreased in young children with cystic fibrosis compared to healthy controls but improved with CFTR modulation

Heliyon(2020)10.1016/j.heliyon.2020.e04104

N/A

0DataRank · unranked

18 citations

A. Millie Burrell, Emily Ansusinha, Diane Peng, Hollis Chaney, Iman Sami +7 more

Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression

Frontiers in Immunology(2021)10.3389/fimmu.2021.661437

N/A

0DataRank · unranked

28 citations

Tyson Dawson, Ali Rahnavard, Prathyusha Bachali, Matthew L. Bendall, Chen Zeng +6 more

Felsenstein Phylogenetic Likelihood

Journal of Molecular Evolution(2021)10.1007/s00239-020-09982-w

N/A

0DataRank · unranked

27 citations

Keith A. Crandall, David Posada

Inflammation in children with cystic fibrosis: contribution of bacterial production of long-chain fatty acids

Pediatric Research(2021)10.1038/s41390-021-01419-4

N/A

0DataRank · unranked

19 citations

A. Millie Burrell, Hollis Chaney, Iman Sami, Anastassios C. Koumbourlis, Robert J. Freishtat +3 more

COVID-19 Disease Severity among People with HIV Infection or Solid Organ Transplant in the United States: A Nationally-representative, Multicenter, Observational Cohort Study

medRxiv(2021)10.1101/2021.07.26.21261028

N/A

0DataRank · unranked

50 citations

Rena C. Patel, Qulu Zheng, Vithal Madhira, Amy L. Olex, Jessica Y. Islam +14 more

The HIV latency reversal agent HODHBt enhances NK Cell effector and memory-like functions by increasing IL-15 mediated-STAT activation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.14.464348

N/A

0DataRank · unranked

2 citations

Callie Levinger, Bryan Nguyen, Mampta Gupta, Carolina Colli Cruz, Katherine B. Chiappinelli +3 more

Standards recommendations for the Earth BioGenome Project

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115639118

N/A

0DataRank · unranked

109 citations

Richard Durbin, Paul Flicek, Kerstin Lindblad‐Toh, Xiaofeng Wei, John M. Archibald +40 more

Unlocking capacities of genomics for the COVID-19 response and future pandemics

Nature Methods(2022)10.1038/s41592-022-01444-z

N/A

0DataRank · unranked

67 citations

Karishma Chhugani, Varuni Sarwal, Ram Ayyala, Harman Singh, Smruthi Karthikeyan +30 more

Impact of Fecal Microbiota Transplantation on Gut Bacterial Bile Acid Metabolism in Humans

Nutrients(2022)10.3390/nu14245200

N/A

0DataRank · unranked

62 citations

Tyson Dawson, Caitlin Loeffler, Zara Marfori, Julian R. Marchesi, Benjamin H. Mullish +6 more

Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States

Viruses(2022)10.3390/v15010068

N/A

0DataRank · unranked

3 citations

Zehava Grossman, Priyanka Vengurlekar, William Chai, Megan A. Wallace, Soo‐Yon Rhee +11 more

Hospital Antimicrobial Stewardship: Non-Bacterial Saliva Microbiome Emerges as a Biomarker of COVID-19 Severity

Research Square(2022)10.21203/rs.3.rs-2292121/v1

N/A

0DataRank · unranked

0 citations

Krystal Fernandez, Castle Raley, Ali Rahnavard, Keith A. Crandall, José G. Castro +1 more

Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

Scientific Reports(2023)10.1038/s41598-023-40799-x

N/A

0DataRank · unranked

87 citations

Tyler Faits, Eduardo Castro‐Nallar, Keith A. Crandall, W. Evan Johnson, Aubrey R. Odom-Mabey

Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci

Cancer Research(2023)10.1158/0008-5472.can-22-3485

N/A

0DataRank · unranked

27 citations

Uzma Rentia, Melissa Hadley, Jennifer A. Karlow, Olivia L. Cox, Noor Diab +10 more

Locus specific endogenous retroviral expression associated with Alzheimer’s disease

Frontiers in Aging Neuroscience(2023)10.3389/fnagi.2023.1186470

N/A

0DataRank · unranked

19 citations

Uzma Rentia, Jessie Sanford, Carlos Cruchaga, John Kauwe, Keith A. Crandall +1 more

Data from Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

(2023)10.1158/0008-5472.c.6513061.v1

N/A

0DataRank · unranked

0 citations

Jez L. Marston, L. Iñiguez, Matthew L. Bendall, Katherine B. Chiappinelli, Douglas F. Nixon +2 more

Aldehydes alter TGF-β signaling and induce obesity and cancer

Cell Reports(2024)10.1016/j.celrep.2024.114676

N/A

0DataRank · unranked

17 citations

Krishanu Bhowmick, Shuyun Rao, Xiyan Xiang, Kazufumi Ohshiro, Richard Amdur +20 more

Evaluation of haplotype callers for next-generation sequencing of viruses

Infection Genetics and Evolution(2020)10.1016/j.meegid.2020.104277

N/A

0DataRank · unranked

48 citations

Keylie M. Gibson, Pavel Avdeyev, Dmitry Novik, Matthew L. Bendall, Marcos Pérez‐Losada +3 more

Hospital antimicrobial stewardship: profiling the oral microbiome after exposure to COVID-19 and antibiotics

Frontiers in Microbiology(2024)10.3389/fmicb.2024.1346762

N/A

0DataRank · unranked

3 citations

Krystal Fernandez, Castle Raley, Ali Rahnavard, Keith A. Crandall, José G. Castro +1 more

Estimating rare disease prevalence and costs in the USA: a cohort study approach using the Healthcare Cost Institute claims data

BMJ Public Health(2024)10.1136/bmjph-2023-000346

Top 100%

0DataRank

Top 100%0 citations

Ainslie Tisdale, Mahdi Baghbanzadeh, Keith A. Crandall, Reva L. Stidd, Manpreet S Khural +5 more

Analysis of metagenomic data

Nature Reviews Methods Primers(2025)10.1038/s43586-024-00376-6

N/A

0DataRank · unranked

62 citations

Judith Rodríguez, Viorel Munteanu, Cynthia Ronkowski, Nitesh Kumar Sharma, Mohammed Alser +35 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0DataRank · unranked

82 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Keith A. Crandall

Indexed papers

Top data-sharing exemplar

Papers