🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jeffrey Thompson

University of Kansas Medical Center

ORCID: 0000-0002-0876-2582
Biochemistry, Genetics and Molecular BiologyHealth Professions

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.3Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cross-platform normalization of microarray and RNA-seq data for machine learning applications

PeerJ(2016)10.7717/peerj.1621
Top 6%
3.8DataRank
Top 6%105 citations

Jie Tan, Casey S. Greene, Jeffrey Thompson

Papers

Driven by 21 papers — median percentile 35. Top paper: “Cross-platform normalization of microarray and RNA-seq data for machine learning applications”.

Cross-platform normalization of microarray and RNA-seq data for machine learning applications

PeerJ(2016)10.7717/peerj.1621
Top 6%
3.8DataRank
Top 6%105 citations

Jie Tan, Casey S. Greene, Jeffrey Thompson

An R package for Survival-based Gene Set Enrichment Analysis

Research Square(2023)10.21203/rs.3.rs-3367968/v1
N/A
0.522DataRank · unranked
12 citations

Jeffrey Thompson, Xiaoxu Deng

Cross-platform normalization of microarray and RNA-seq data for machine learning applications

(2015)10.7287/peerj.preprints.1460v1
Top 59%
0.261DataRank
Top 59%4 citations

Jie Tan, Casey S. Greene, Jeffrey Thompson

Training Distribution Matching (TDM) Evaluation and Results

Zenodo (CERN European Organization for Nuclear Research)(2015)10.5281/zenodo.32851
Top 70%
0.165DataRank
Top 70%2 citations

Casey S. Greene, Jeffrey Thompson

Training Distribution Matching (TDM) R Package

Zenodo (CERN European Organization for Nuclear Research)(2015)10.5281/zenodo.32852
N/A
0.104DataRank · unranked
1 citations

Casey S. Greene, Jeffrey Thompson

Training Distribution Matching (TDM) Results: Analysis Code for Accepted TDM Manuscript

Zenodo (CERN European Organization for Nuclear Research)(2016)10.5281/zenodo.44668
Top 78%
0.104DataRank
Top 78%1 citations

Casey S. Greene, Jeffrey Thompson

AMEND: active module identification using experimental data and network diffusion

BMC Bioinformatics(2023)10.1186/s12859-023-05376-z
N/A
0DataRank · unranked
8 citations

Chad Slawson, Jeffrey Thompson, Samuel S. Boyd

Association between bisphosphonate use and COVID-19 related outcomes

eLife(2023)10.7554/elife.79548
N/A
0DataRank · unranked
13 citations

Yidi Wang, Tobias Dreischulte, Olga Barreiro, Rodrigo J. Gonzalez, Pavel Hanč +7 more

Evaluating Financial Toxicity in Urologic Practice

Urology(2023)10.1016/j.urology.2023.04.040
N/A
0DataRank · unranked
4 citations

Daniel Au, Jared Starkey, Jeffrey Thompson, W. Parker, Vassili Glazyrine

Comprehensive exploration of JQ1 and GSK2801 targets in breast cancer using network pharmacology and molecular modeling approaches

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.06.003
N/A
0DataRank · unranked
2 citations

Dong Pei, Emily Nissen, Jeffrey Thompson, Devin C. Koestler, Nanda Kumar Yellapu

Evaluation of sarcopenia in patients receiving intravesical Bacillus Calmette-Guérin for non-muscle invasive bladder cancer

Urologic Oncology Seminars and Original Investigations(2023)10.1016/j.urolonc.2023.05.021
N/A
0DataRank · unranked
2 citations

Matthew Larson, Srinivasan Pugazhendhi, Nick Genz, R. Fleer, Mihaela E. Sardiu +5 more

The rural mortality penalty in U.S. hospital patients with COVID-19

Population Health Metrics(2024)10.1186/s12963-024-00340-2
N/A
0DataRank · unranked
4 citations

Dinesh Pal Mudaranthakam, Lynn Chollet‐Hinton, Jeffrey Thompson

Multi-omics after O-GlcNAc alteration identified cellular processes promoting aneuploidy after loss of O-GlcNAc transferase

Molecular Metabolism(2024)10.1016/j.molmet.2024.102060
N/A
0DataRank · unranked
3 citations

Dakota R. Robarts, Khue Nguyen, Maite Villar, Ibtihal Alghusen, Manasi Kotulkar +14 more

Multi-Omics after O-GlcNAc Alteration Identifies Cellular Processes Working Synergistically to Promote Aneuploidy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.16.589379
N/A
0DataRank · unranked
0 citations

Dakota R. Robarts, Khue Nguyen, Maite Villar, Ibtihal Alghusen, Manasi Kotulkar +14 more

An R package for survival-based gene set enrichment analysis

PeerJ(2025)10.7717/peerj.19489
N/A
0DataRank · unranked
4 citations

Jeffrey Thompson, Xiaoxu Deng

AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs

BMC Bioinformatics(2025)10.1186/s12859-025-06063-x
N/A
0DataRank · unranked
1 citations

Chad Slawson, Jeffrey Thompson, Samuel S. Boyd

Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments

BMC Genomics(2020)10.1186/s12864-020-6589-x
N/A
0DataRank · unranked
28 citations

Devin C. Koestler, Jeffrey Thompson

Improving the efficiency of clinical trials by standardizing processes for Investigator Initiated Trials

Contemporary Clinical Trials Communications(2020)10.1016/j.conctc.2020.100579
N/A
0DataRank · unranked
6 citations

Milind A. Phadnis, Ron Krebill, Lauren Clark, Jo Wick, Jeffrey Thompson +5 more

The need to study rural cancer outcome disparities at the local level: a retrospective cohort study in Kansas and Missouri

BMC Public Health(2021)10.1186/s12889-021-12190-w
N/A
0DataRank · unranked
16 citations

Lynn Chollet‐Hinton, John Keighley, Audrey Chang, Dinesh Pal Mudaranthakam, David Streeter +4 more

Bolstering the complex study start-up process at NCI cancer centers using technology

Contemporary Clinical Trials Communications(2022)10.1016/j.conctc.2022.101050
N/A
0DataRank · unranked
3 citations

Sam Pepper, Alexander Alsup, Tara L. Lin, Natalie Streeter, Jeffrey Thompson +4 more

Association between Bisphosphonate use and COVID-19 related outcomes: a retrospective cohort study

medRxiv(2022)10.1101/2022.06.14.22276397
N/A
0DataRank · unranked
2 citations

Yidi Wang, Tobias Dreischulte, Olga Barreiro, Rodrigo J. Gonzalez, Pavel Hanč +7 more