Patrick J. Murphy

Also affiliated with University of Rochester Medicine

Biochemistry, Genetics and Molecular BiologyEngineeringNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Genome-wide chromatin accessibility is restricted by ANP32E”.

Genome-wide chromatin accessibility is restricted by ANP32E

Nature Communications(2020)10.1038/s41467-020-18821-x

N/A

0DataRank · unranked

56 citations

Fanju W. Meng, Claire E. Makowski, Patrick J. Murphy, Kristin Murphy

Identification of chromatin states during zebrafish gastrulation using CUT & RUN and CUT &Tag

Developmental Dynamics(2021)10.1002/dvdy.430

N/A

0DataRank · unranked

31 citations

Katherine L. Duval, Fanju W. Meng, Patrick J. Murphy, Mary Goll, Bagdeser Akdogan‐Ozdilek

Subtype-Independent ANP32E Reduction During Breast Cancer Progression in Accordance with Chromatin Relaxation

BMC Cancer(2021)10.1186/s12885-021-09077-9

N/A

0DataRank · unranked

13 citations

Kristin Murphy, Zachary Smith, Paula M. Vertino, Patrick J. Murphy, Garrett L. Ruff

Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.447589

N/A

0DataRank · unranked

2 citations

Katherine L. Duval, Fanju W. Meng, Patrick J. Murphy, Mary Goll, Bagdeser Akdogan‐Ozdilek

NURF301 contributes to gypsy chromatin insulator-mediated nuclear organization

Nucleic Acids Research(2022)10.1093/nar/gkac600

N/A

0DataRank · unranked

10 citations

Leah F. Rosin, Gianluca Pegoraro, Nellie Moshkovich, Patrick J. Murphy, Guoyun Yu +2 more

Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression

Development(2023)10.1242/dev.202338

N/A

0DataRank · unranked

15 citations

Kristin Murphy, Claire E. Makowski, Benjamin Delatte, Patrick J. Murphy, Fanju W. Meng

Anp32e protects against accumulation of H2A.Z at Sox motif containing promoters during zebrafish gastrulation

Developmental Biology(2023)10.1016/j.ydbio.2023.12.010

N/A

0DataRank · unranked

10 citations

Fanju W. Meng, Patrick J. Murphy, Fabian N. Halblander

Anp32e protects against accumulation of H2A.Z at Sox motif containing promoters during zebrafish gastrulation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.18.572196

N/A

0DataRank · unranked

0 citations

Fanju W. Meng, Patrick J. Murphy, Fabian N. Halblander

CUT&Tag applied to zebrafish adult tail fins reveals a return of embryonic H3K4me3 patterns during regeneration

Epigenetics & Chromatin(2024)10.1186/s13072-024-00547-5

N/A

0DataRank · unranked

1 citations

Anjelica Rodriguez-Parks, Junsu Kang, Patrick J. Murphy, Phu Duong

CUT&Tag Applied to Zebrafish Adult Tail Fins Reveals a Return of Embryonic H3K4me3 Patterns During Regeneration

Research Square(2024)10.21203/rs.3.rs-4189493/v1

N/A

0DataRank · unranked

1 citations

Anjelica Rodriguez-Parks, Junsu Kang, Patrick J. Murphy, Phu Duong

The Effects of Perfluorooctanesulfonic acid (PFOS) on Human Umbilical Vein Endothelial Cells (HUVECs) Proliferation and Gene Expression and its Implications on Fetal Development

PubMed(2024)10.17912/micropub.biology.001318

N/A

0DataRank · unranked

0 citations

Patrick J. Murphy, James Jukosky, Chery A. Whipple, Alycia Ashby

Epigenetic erosion of H4K20me1 induced by inflammation drives aged stem cell ferroptosis

Nature Aging(2025)10.1038/s43587-025-00902-5

N/A

0DataRank · unranked

15 citations

Nidhi Shah, Sarah Hachmer, Noah Salama, Fanju W. Meng, Alireza Mousaei +12 more

CUT&Tag overcomes biases of ChIP and establishes chromatin patterns for repetitive genomic loci

iScience(2025)10.1016/j.isci.2025.113757

N/A

0DataRank · unranked

4 citations

Shan Hua, Karli D Casler, Eric Cefaloni, Michael C. Ayers, Rahiim F. Lake +5 more

TransTag enables simple and efficient transgene mapping in zebrafish via tagmentation

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101090

N/A

0DataRank · unranked

1 citations

Paige Schneider, Xiaolu Wei, Krishan Ariyasiri, Marnie E Halpern, Patrick J. Murphy +1 more

Protocol for mapping insertion sites of Tol2 transgenes in zebrafish using TransTag

STAR Protocols(2025)10.1016/j.xpro.2025.104259

N/A

0DataRank · unranked

1 citations

Vijaykumar Naidu, Paige Schneider, Patrick J. Murphy, Fanju W. Meng, Xiaolu Wei