Nancy R. Zhang

Also affiliated with California University of Pennsylvania, William P. Wharton Trust, University of Pennsylvania

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.9Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 38 papers — median percentile 100. Top paper: “Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project”.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Subsampling methods for genomic inference

The Annals of Applied Statistics(2010)10.1214/10-aoas363

N/A

4.5DataRank · unranked

68 citations

Nathan Boley, James B Brown, Haiyan Huang, Nancy R. Zhang, Peter J. Bickel

SAVER: gene expression recovery for single-cell RNA sequencing

Nature Methods(2018)10.1038/s41592-018-0033-z

N/A

1.0DataRank · unranked

851 citations

Jingshu Wang, Eduardo Torre, Hannah Dueck, Sydney Shaffer, Roberto Bonasio +7 more

Causal inference for heritable phenotypic risk factors using heterogeneous genetic instruments

PLoS Genetics(2021)10.1371/journal.pgen.1009575

N/A

0.692DataRank · unranked

100 citations

Qingyuan Zhao, Jack Bowden, Gibran Hemani, George Davey Smith, Dylan S. Small +2 more

Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus

Research Square(2024)10.21203/rs.3.rs-5398491/v1

N/A

0.241DataRank · unranked

4 citations

Archibald Enninful, Zhaojun Zhang, Dmytro Klymyshyn, Hailing Zong, Zhiliang Bai +11 more

Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.349407

N/A

0DataRank · unranked

2 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

Global copy number profiling of cancer genomes

UNC Libraries(2020)10.17615/djsd-nh36

N/A

0DataRank · unranked

0 citations

Mengjie Chen, Xuefeng Wang, Xiaoqing Yu, Nancy R. Zhang, R. Scott Powers +3 more

Integrative single-cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

Nature Biotechnology(2021)10.1038/s41587-021-00911-w

N/A

0DataRank · unranked

80 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

Nonparametric Interrogation of Transcriptional Regulation in Single-Cell RNA and Chromatin Accessibility Multiomic Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.22.461437

N/A

0DataRank · unranked

3 citations

Yuriko Harigaya, Zhaojun Zhang, Hongpan Zhang, Chongzhi Zang, Nancy R. Zhang +1 more

Nonparametric Interrogation of Transcriptional Regulation in Single-Cell RNA and Chromatin Accessibility Multiomic Data

Research Square(2021)10.21203/rs.3.rs-930184/v1

N/A

0DataRank · unranked

0 citations

Zhaojun Zhang, Hongpan Zhang, Chongzhi Zang, Nancy R. Zhang, Yuchao Jiang +1 more

Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1 + Macrophages and Fibroblasts

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-2041

N/A

0DataRank · unranked

198 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Systematic single-cell pathway analysis to characterize early T cell activation

Cell Reports(2022)10.1016/j.celrep.2022.111697

N/A

0DataRank · unranked

158 citations

Divyansh Agarwal, Tilo Freiwald, Natalia Kunz, Nicolas S. Merle, Erin E. West +8 more

Nonparametric single-cell multiomic characterization of trio relationships between transcription factors, target genes, and cis-regulatory regions

Cell Systems(2022)10.1016/j.cels.2022.08.004

N/A

0DataRank · unranked

45 citations

Yuriko Harigaya, Zhaojun Zhang, Hongpan Zhang, Chongzhi Zang, Nancy R. Zhang +1 more

Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.05.498882

N/A

0DataRank · unranked

6 citations

Anuja Sathe, Jiazhen Rong, Paul R. Hess, Billy T. Lau, Susan M. Grimes +3 more

A multiplex platform to identify mechanisms and modulators of proteotoxicity in neurodegeneration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.19.508444

N/A

0DataRank · unranked

6 citations

Seema Qamar, Jenny Sheng, Lei Huang, Jonathon Nixon‐Abell, Schuyler Melore +11 more

A comparative study of structural variant calling strategies using the Alzheimer’s Disease Sequencing Project’s whole genome family data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.19.492472

N/A

0DataRank · unranked

1 citations

John J. Farrell, Li Charlie Xia, Beth A. Dombroski, Wan‐Ping Lee, Gautami Das +14 more

Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data

Research Square(2022)10.21203/rs.3.rs-1838921/v1

N/A

0DataRank · unranked

1 citations

Chi-Yun Wu, Anuja Sathe, Jiazhen Rong, P. C. Hess, Billy T. Lau +3 more

Integration of spatial and single-cell data across modalities with weakly linked features

Nature Biotechnology(2023)10.1038/s41587-023-01935-0

N/A

0DataRank · unranked

104 citations

Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, Michael P. Snyder +5 more

Antisense, but not sense, repeat expanded RNAs activate PKR/eIF2α-dependent ISR in C9ORF72 FTD/ALS

eLife(2023)10.7554/elife.85902

N/A

0DataRank · unranked

22 citations

Nancy R. Zhang, Elke Braems, Kedamawit Tilahun, Devesh C. Pant, Keena Yin +10 more

Clonal cell states link Barrett’s esophagus and esophageal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525564

N/A

0DataRank · unranked

13 citations

Raúl A. Reyes Hueros, Jiazhen Rong, Maureen DeMarshall, Tatiana A. Karakasheva, Amanda B. Muir +4 more

Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia

Research Square(2023)10.21203/rs.3.rs-3487715/v1

N/A

0DataRank · unranked

7 citations

Jason Xu, Changya Chen, Tiffaney L. Vincent, Petri Pölönen, Jianzhong Hu +44 more

Single cell and spatial alternative splicing analysis with long read sequencing

Research Square(2023)10.21203/rs.3.rs-2674892/v1

N/A

0DataRank · unranked

5 citations

Yuntian Fu, Heon Seok Kim, Jenea I. Adams, Susan M. Grimes, Sijia Huang +5 more

Data from Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts

(2023)10.1158/1078-0432.c.6532742

N/A

0DataRank · unranked

0 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Niche-DE: niche-differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions

Genome biology(2024)10.1186/s13059-023-03159-6

N/A

0DataRank · unranked

50 citations

Anuja Sathe, Paul R. Hess, Jiazhen Rong, Chi-Yun Wu, Emma E. Furth +5 more

A multiomic atlas identifies a treatment-resistant, bone marrow progenitor-like cell population in T cell acute lymphoblastic leukemia

Nature Cancer(2024)10.1038/s43018-024-00863-5

N/A

0DataRank · unranked

31 citations

Changya Chen, Jonathan Sussman, Satoshi Yoshimura, Tiffaney L. Vincent, Petri Pölönen +47 more

A comparative study of structural variant calling in WGS from Alzheimer’s disease families

Life Science Alliance(2024)10.26508/lsa.202302181

N/A

0DataRank · unranked

6 citations

John J. Farrell, Li Charlie Xia, Beth A. Dombroski, Gautami Das, Jessica Way +14 more

Single cell and spatial alternative splicing analysis with Nanopore long read sequencing

Nature Communications(2025)10.1038/s41467-025-60902-2

N/A

0DataRank · unranked

20 citations

Heon Seok Kim, Sharmili Roy, Sijia Huang, Jenea I. Adams, Susan M. Grimes +5 more

Cancer subclone detection based on DNA copy number in single-cell and spatial omic sequencing data

Nature Methods(2025)10.1038/s41592-025-02773-5

N/A

0DataRank · unranked

7 citations

Jiazhen Rong, Anuja Sathe, Paul R. Hess, Billy T. Lau, Susan M. Grimes +4 more

Multiplex neurodegeneration proteotoxicity platform reveals DNAJB6 promotes non-toxic FUS condensate gelation and inhibits neurotoxicity

Nature Communications(2025)10.1038/s41467-025-65178-0

N/A

0DataRank · unranked

3 citations

Seema Qamar, Pushya Krishna, Vladislav A. Korobeynikov, Hannes Ausserwӧger, Alyssa Miller +26 more

Machine learning-assisted stiffness prediction in high-cell-density bioprinting

Bio-Design and Manufacturing(2025)10.1631/bdm.2400454

N/A

0DataRank · unranked

3 citations

Yazhi Sun, Emmie Yao, Yi Xiang, Mary K. Melarkey, Guang‐Hong Lu +4 more

Clonal cell states link gastroesophageal junction tissues with metaplasia and cancer

Nature Communications(2025)10.1038/s41467-025-66302-w

N/A

0DataRank · unranked

2 citations

Sydney A. Bracht, Jiazhen Rong, Raúl A. Reyes Hueros, Madison Wahlsten, Christopher Coté +8 more

Nephrobase Cell+: Multimodal Single-Cell Foundation Model for Decoding Kidney Biology

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.30.679471

N/A

0DataRank · unranked

4 citations

Elias Mark Ziyadeh, Yash Sharma, Bernhard Dumoulin, Jonathan Levinsohn, Eunji Ha +7 more

Dual checkpoint blockade of glioblastoma with Anti-PD-1 and Anti-LAG-3 promotes expansion of tumor-reactive T cell clones along a unique pathway of differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.06.674490

N/A

0DataRank · unranked

3 citations

Yuntian Fu, Sadhana Bom, Yi Ning, Divij Matthews, Ming Zhang +14 more

Deciphering Cell Fate and Clonal Dynamics via Integrative Single-Cell Lineage Modeling

Research Square(2025)10.21203/rs.3.rs-7510946/v1

N/A

0DataRank · unranked

0 citations

Yuntian Fu, Divij Mathew, Mingshuang Wang, Xinyi Chen, Kevin Lin +5 more

Surface protein imputation from single cell transcriptomes by deep neural networks

Nature Communications(2020)10.1038/s41467-020-14391-0

N/A

0DataRank · unranked

92 citations

Chengzhong Ye, Jingshu Wang, Nancy R. Zhang, Zilu Zhou

DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing

Genome biology(2020)10.1186/s13059-019-1922-x

N/A

0DataRank · unranked

66 citations

Bihui Xu, Andy J. Minn, Nancy R. Zhang, Zilu Zhou

Alleloscope: Integrative single cell analysis of allele-specific copy number alterations and chromatin accessibility in cancer

Research Square(2020)10.21203/rs.3.rs-98536/v1

N/A

0DataRank · unranked

5 citations

Billy T. Lau, Heon Seok Kim, Anuja Sathe, Susan M. Grimes, Hanlee P. Ji +2 more

Colorectal cancer metastases in the liver establish immunosuppressive spatial networking between tumor associated SPP1 + macrophages and fibroblasts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.273672

N/A

0DataRank · unranked

3 citations

Kaishu Mason, Susan M. Grimes, Zilu Zhou, Billy T. Lau, Xiangqi Bai +9 more

Nancy R. Zhang

Indexed papers

Top data-sharing exemplar

Papers