Min Xu

Computer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 40 papers. Top paper: “Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species”.

Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008297

N/A

0.855DataRank · unranked

12 citations

Haohan Wang, Yang Zhang, Xin Gao, Eric P. Xing, Min Xu +1 more

Prolificacy Assessment of Spermatozoan via State-of-the-Art Deep Learning Frameworks

IEEE Access(2022)10.1109/access.2022.3146334

N/A

0.538DataRank · unranked

35 citations

Mahendra Kumar Gourisaria, Harshvardhan GM, Debanjan Konar, Xin Gao, Tianyang Wang +2 more

Nanoscale details of mitochondrial constriction revealed by cryoelectron tomography

Biophysical Journal(2023)10.1016/j.bpj.2023.07.030

N/A

0.520DataRank · unranked

31 citations

Danielle A. Grotjahn, Xiangrui Zeng, Benjamin A. Barad, Michaela Medina, My Hanh Thi Hoang +6 more

Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008227

N/A

0.416DataRank · unranked

15 citations

Liangyong Yu, Bo Zhou, Xiangrui Zeng, Zhenyu Wang, Xiaoyan Yang +5 more

DISCA: high-throughput cryo-ET structural pattern mining by deep unsupervised clustering

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.16.444381

N/A

0.373DataRank · unranked

11 citations

Anson Kahng, Liang Xue, Julia Mahamid, Yi‐Wei Chang, Min Xu +1 more

AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis

Sensors(2020)10.3390/s20195455

N/A

0.373DataRank · unranked

11 citations

Yixiao Ma, Jing Zhang, Xin Gao, Min Xu, Yufeng Yang

CryoETGAN: Cryo-Electron Tomography Image Synthesis via Unpaired Image Translation

Frontiers in Physiology(2022)10.3389/fphys.2022.760404

N/A

0.312DataRank · unranked

7 citations

Chengkun Li, Xiangrui Zeng, Haocheng Wei, Hong‐Wen Deng, Jing Zhang +2 more

Self-supervised learning for macromolecular structure classification based on cryo-electron tomograms

Frontiers in Physiology(2022)10.3389/fphys.2022.957484

N/A

0.269DataRank · unranked

5 citations

Xuehai He, Mostofa Rafid Uddin, Xiangrui Zeng, Andrew Zhou, Jing Zhang +3 more

PUB-SalNet: A Pre-Trained Unsupervised Self-Aware Backpropagation Network for Biomedical Salient Segmentation

Algorithms(2020)10.3390/a13050126

N/A

0.269DataRank · unranked

5 citations

Ying Jiang, Xiangrui Zeng, Jing Zhang, Xin Gao, Min Xu +1 more

AITom: AI-guided cryo-electron tomography image analyses toolkit

Journal of Structural Biology(2025)10.1016/j.jsb.2025.108207

N/A

0.208DataRank · unranked

3 citations

Xiangrui Zeng, Mostofa Rafid Uddin, Min Xu, Xueying Zhan

Molecular landscape of the fungal plasma membrane and implications for antifungal action

Nature Communications(2025)10.1038/s41467-025-64171-x

N/A

0.165DataRank · unranked

2 citations

Mikhail V. Keniya, Anusha Puri, Xueying Zhan, Jeff Cheng, Huan Wang +14 more

SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments

Bioinformatics(2021)10.1093/bioinformatics/btaa1039

N/A

0DataRank · unranked

17 citations

Jing Zhang, Jason Liu, Zixuan Zhang, Jiangqi Zhu, Donghoon Lee +3 more

Active learning to classify macromolecular structures in situ for less supervision in cryo-electron tomography

Bioinformatics(2021)10.1093/bioinformatics/btab123

N/A

0DataRank · unranked

12 citations

Haohan Wang, Zhenxi Zhu, Xiangrui Zeng, Yi‐Wei Chang, Jing Zhang +3 more

Deep Learning Predicts EBV Status in Gastric Cancer Based on Spatial Patterns of Lymphocyte Infiltration

Cancers(2021)10.3390/cancers13236002

N/A

0DataRank · unranked

12 citations

Kevin Yao, Min Xu, Jia Wu, Chao Cheng, Baoyi Zhang

Nanoscale details of mitochondrial fission revealed by cryo-electron tomography

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.13.472487

N/A

0DataRank · unranked

7 citations

Danielle A. Grotjahn, Xiangrui Zeng, Benjamin A. Barad, Michaela Medina, My Hanh Thi Hoang +6 more

Unsupervised Domain Alignment Based Open Set Structural Recognition of Macromolecules Captured By Cryo-Electron Tomography

PubMed(2021)10.1109/icip42928.2021.9506205

N/A

0DataRank · unranked

4 citations

Gregory Howe, Kai Yi, Xiangrui Zeng, Jing Zhang, Yi‐Wei Chang +2 more

DECODE: A De ep-learning Framework for Co n de nsing Enhancers and Refining Boundaries with Large-scale Functional Assays

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.27.428477

N/A

0DataRank · unranked

0 citations

Jing Zhang, Jason Liu, Yi Dai, Donghoon Lee, Martin Renqiang Min +3 more

Few shot domain adaptation forin situmacromolecule structural classification in cryoelectron tomograms

Bioinformatics(2020)10.1093/bioinformatics/btaa671

N/A

0DataRank · unranked

11 citations

Ran Li, Xiangrui Zeng, Hongyi Wang, Jie Jin, Ge Yang +3 more

Deep-Precognitive Diagnosis: Preventing Future Pandemics by Novel Disease Detection With Biologically-Inspired Conv-Fuzzy Network

IEEE Access(2022)10.1109/access.2022.3153059

N/A

0DataRank · unranked

11 citations

Rahul Upadhyay, Vinay Kumar, Chao Cheng, Jing Zhang, Tianyang Wang +2 more

A unified framework for packing deformable and non-deformable subcellular structures in crowded cryo-electron tomogram simulation

BMC Bioinformatics(2020)10.1186/s12859-020-03660-w

N/A

0DataRank · unranked

14 citations

Xiaojuan Ban, Xiangrui Zeng, Fengnian Zhao, Yuan Gao, Wenjie Wu +6 more

Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010636

N/A

0DataRank · unranked

7 citations

Yuhang Chen, Ziheng Duan, Min Xu, Matthew J. Girgenti, Ke Xu +3 more

Deep Active Learning for Cryo-Electron Tomography Classification

2022 IEEE International Conference on Image Processing (ICIP)(2022)10.1109/icip46576.2022.9898002

N/A

0DataRank · unranked

1 citations

Bo Li, Jing Zhang, Xiangrui Zeng, Mostofa Rafid Uddin, Wei Wu +2 more

Knowledge transfer from macro-world to micro-world: enhancing 3D Cryo-ET classification through fine-tuning video-based deep models

(2022)10.1093/bioinformatics/btae368

N/A

0DataRank · unranked

0 citations

Xingjian Li, Min Xu, Sabhay Jain

Spark-based parallel calculation of 3D fourier shell correlation for macromolecule structure local resolution estimation

BMC Bioinformatics(2020)10.1186/s12859-020-03680-6

N/A

0DataRank · unranked

8 citations

Xiangrui Zeng, Xinhui Tian, Xiao Shi, Hui Wang, Xiaohui Zheng +5 more

Computational Methods Toward Unbiased Pattern Mining and Structure Determination in Cryo-Electron Tomography Data

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168068

N/A

0DataRank · unranked

11 citations

Mostofa Rafid Uddin, Min Xu, Yi‐Wei Chang, Hannah Kim

iHerd: an integrative hierarchical graph representation learning framework to quantify network changes and prioritize risk genes in disease

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011444

N/A

0DataRank · unranked

11 citations

Yi Dai, Ahyeon Hwang, Che-Yu Lee, Kaichi Xie, Chutong Xiao +4 more

Detecting anomalies from liquid transfer videos in automated laboratory setting

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2023.1147514

N/A

0DataRank · unranked

6 citations

Zaber Abdul Hakim, Ali Dabouei, Mostofa Rafid Uddin, Zachary Freyberg, Andy MacWilliams +3 more

Localization of Macromolecules in Crowded Cellular Cryo-electron Tomograms from Extremely Sparse Labels

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.04.620735

N/A

0DataRank · unranked

4 citations

Ajmain Yasar Ahmed, H.M. Shadman Tabib, Md Toki Tahmid, Md. Zarif Ul Alam, Zachary Freyberg +2 more

DUAL: deep unsupervised simultaneous simulation and denoising for cryo-electron tomography

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.02.583135

N/A

0DataRank · unranked

3 citations

Yizhe Ding, Yueqian Zhang, Mostofa Rafid Uddin, Ali Dabouei, Min Xu +1 more

Deep Video Analysis for Bacteria Genotype Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.16.613253

N/A

0DataRank · unranked

0 citations

Ishan Mishra, Kuwar Kapur, Chengzhi Cao, Andrew A. Bridges, Min Xu +1 more

MVGFormer: Multi-view perspective with graph-guided transformer for cryo-ET segmentation

Knowledge-Based Systems(2025)10.1016/j.knosys.2025.114810

N/A

0DataRank · unranked

2 citations

Xingjian Li, Huan Wang, Jiahua Shi, Huaming Chen, Yizhou Zhao +6 more

Deep video anomaly detection in automated laboratory setting

Expert Systems with Applications(2025)10.1016/j.eswa.2025.126581

N/A

0DataRank · unranked

6 citations

Jishnu Parayil Shibu, Vibhu Dalal, Chengzhi Cao, Andy MacWilliams, Joshua Kangas +2 more

CryoMAE: Few-Shot Cryo-EM Particle Picking with Masked Autoencoders

PubMed(2025)10.1109/wacv61041.2025.00381

N/A

0DataRank · unranked

9 citations

Xueying Zhan, Min Xu, Chentianye Xu

Fetal-BCP: Addressing Empirical Distribution Gap in Semi-Supervised Fetal Ultrasound Segmentation

(2025)10.1109/isbi60581.2025.10980925

N/A

0DataRank · unranked

2 citations

Linh Bui Khanh, Hoang-Thien Nguyen, Nguyen Tuan Vu, Quang-Vinh Dinh, Thanh-Huy Nguyen +3 more

Deep Disentangled Representation Learning Reveals Neuron Subtype-Specific Nuclear Morphologies Across Aging in Mice and Humans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.16.682849

N/A

0DataRank · unranked

0 citations

Zhiqian Zheng, Kashish Gandhi, Hung‐Ching Chang, Jenesis Gayden, Yaswanth Gali +6 more

A simulated annealing approach for resolution guided homogeneous cryo‐electron microscopy image selection

Quantitative Biology(2020)10.1007/s40484-019-0191-8

N/A

0DataRank · unranked

2 citations

Xiangrui Zeng, Rui Jiang, Tao Jiang, Min Xu, Jie Shi

Localization of macromolecules in crowded cellular cryo-electron tomograms from extremely sparse labels

Briefings in Bioinformatics(2025)10.1093/bib/bbaf630

N/A

0DataRank · unranked

0 citations

Ajmain Yasar Ahmed, H. M. Shadman Tabib, Md Toki Tahmid, Md. Zarif Ul Alam, Zachary Freyberg +2 more

SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.123638

N/A

0DataRank · unranked

2 citations

Jing Zhang, Jason Liu, Zixuan Zhang, Jiangqi Zhu, Donghoon Lee +3 more

One-Shot Learning With Attention-Guided Segmentation in Cryo-Electron Tomography

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2020.613347

N/A

0DataRank · unranked

22 citations

Haisu Yu, Xiangrui Zeng, Xiaoyan Yang, Jing Zhang, Min Xu +1 more

Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization

Bioinformatics(2021)10.1093/bioinformatics/btab794

N/A

0DataRank · unranked

10 citations

Zihao Deng, Leiting Ding, Sinuo Liu, Mostofa Rafid Uddin, Xiangrui Zeng +3 more