Burak Kaynak

ORCID: 0000-0002-0897-2037

Biochemistry, Genetics and Molecular BiologyMaterials ScienceMedicinePhysics and AstronomyMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 8 papers. Top paper: “State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps”.

State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps

Progress in Biophysics and Molecular Biology(2020)10.1016/j.pbiomolbio.2020.08.006

N/A

0DataRank · unranked

19 citations

James Krieger, Karolina Mikulska‐Ruminska, Burak Kaynak, Carlos Óscar S. Sorzano, Jose-Maria Carazo +3 more

ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python

Bioinformatics(2021)10.1093/bioinformatics/btab187

N/A

0DataRank · unranked

229 citations

James Krieger, Yan Zhang, Cihan Kaya, Burak Kaynak, Karolina Mikulska‐Ruminska +4 more

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution

Bioinformatics(2021)10.1093/bioinformatics/btab496

N/A

0DataRank · unranked

29 citations

She Zhang, İvet Bahar, Pemra Doruker, Burak Kaynak

Impact of South African 501.V2 Variant on SARS-CoV-2 Spike Infectivity and Neutralization: A Structure-based Computational Assessment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.10.426143

N/A

0DataRank · unranked

70 citations

James Krieger, Burak Kaynak, Moshe Arditi, İvet Bahar, Mary Hongying Cheng

Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions

iScience(2022)10.1016/j.isci.2022.103939

N/A

0DataRank · unranked

53 citations

James Krieger, Anupam Banerjee, Yufei Xiang, Burak Kaynak, Yi Shi +3 more

Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.832847

N/A

0DataRank · unranked

32 citations

James Krieger, Bálint Dudás, Zakaria Larbi Dahmani, Maurício G. S. Costa, Erika Balog +5 more

Predicting allosteric pockets in protein biological assemblages

Bioinformatics(2023)10.1093/bioinformatics/btad275

N/A

0DataRank · unranked

28 citations

Burak Kaynak, Karin S. Dorman, Pemra Doruker, Robert L. Jernigan, Ambuj Kumar

Cooperative mechanics of PR65 scaffold underlies the allosteric regulation of the phosphatase PP2A

Structure(2023)10.1016/j.str.2023.02.012

N/A

0DataRank · unranked

17 citations

Zakaria Larbi Dahmani, Pemra Doruker, Anupam Banerjee, Shang-Hua Yang, Reuven Gordon +3 more