Dmitry A. Rodionov

Sanford Burnham Prebys Medical Discovery Institute

Also affiliated with Discovery Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 34 papers. Top paper: “Combined Prebiotic and Microbial Intervention Improves Oral Cholera Vaccination Responses in a Mouse Model of Childhood Undernutrition”.

Combined Prebiotic and Microbial Intervention Improves Oral Cholera Vaccination Responses in a Mouse Model of Childhood Undernutrition

Cell Host & Microbe(2020)10.1016/j.chom.2020.04.008

N/A

1.9DataRank · unranked

66 citations

Philip P. Ahern, Nicholas W. Griffin, Jiye Cheng, Janaki L. Guruge, Alexandra Byrne +9 more

Carbohydrates great and small, from dietary fiber to sialic acids: How glycans influence the gut microbiome and affect human health

Gut Microbes(2021)10.1080/19490976.2020.1869502

N/A

0.706DataRank · unranked

110 citations

Oriane Moyne, Dmitry A. Rodionov, Karsten Zengler, Joanna Coker

Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition

Cell Reports(2022)10.1016/j.celrep.2022.110738

N/A

0.702DataRank · unranked

14 citations

Mark A. Zaydman, Siddarth Venkatesh, Yo Sasaki, Neha Damaraju, Alex L. Yenkin +9 more

Bioactive glycans in a microbiome-directed food for children with malnutrition

Nature(2023)10.1038/s41586-023-06838-3

N/A

0.628DataRank · unranked

65 citations

Daniel M. Webber, Dmitry A. Rodionov, Suzanne Henrissat, Robert Y. Chen, Cyrus Zhou +24 more

Dietary Emulsifier Sodium Stearoyl Lactylate Alters Gut Microbiota in vitro and Inhibits Bacterial Butyrate Producers

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00892

N/A

0.546DataRank · unranked

37 citations

Jaime E. Zlamal, David A. Scott, Ryan B. Lee, Daniel J. Chen, Alexandre R. Colas +3 more

Lactose-reduced infant formula with added corn syrup solids is associated with a distinct gut microbiota in Hispanic infants

Gut Microbes(2020)10.1080/19490976.2020.1813534

N/A

0.515DataRank · unranked

30 citations

Paige K. Berger, Jasmine F. Plows, Tanya L. Alderete, Joshua Millstein, Jennifer L. Fogel +6 more

Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2311422120

N/A

0.457DataRank · unranked

20 citations

Darryl A. Wesener, Timothy Seebeck, Janaki L. Guruge, Alexandra Byrne, Suzanne Henrissat +15 more

Glycoside hydrolase–mediated glucomannan catabolism in Segatella copri , a target of microbiota-directed foods for malnourished children

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2521522122

N/A

0.312DataRank · unranked

7 citations

Matthew C. Hibberd, Evan M. Lee, Bo Pilgaard, M. Paul Vuillemin, Emma Kiehn +15 more

Ex Vivo Interaction Between Human Gut Microbiota and Artemisinin: A Multi-Omics Perspective

ACS Omega(2025)10.1021/acsomega.5c01983

N/A

0.208DataRank · unranked

3 citations

Helena Mannochio-Russo, Stanislav N. lablokov, Dmitry A. Rodionov, Heejung Yang, Pieter C. Dorrestein +3 more

CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli

Communications Biology(2024)10.1038/s42003-024-06831-0

N/A

0.184DataRank · unranked

2 citations

Hyun Gyu Lim, Ye Gao, Dmitry A. Rodionov, Ying Hutchison, Richard Szubin +4 more

In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides

Nature Chemical Biology(2024)10.1038/s41589-024-01763-6

N/A

0.104DataRank · unranked

1 citations

Zachary Beller, Megan Hill, Han Yuan, David Belanger, Cheryl Frankfater +8 more

CyuR is a Dual Regulator for L-Cysteine Dependent Antimicrobial Resistance in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.16.541025

N/A

0.104DataRank · unranked

1 citations

Hyun Gyu Lim, Dmitry A. Rodionov, Ying Hutchison, Christopher Dalldorf, Ye Gao +3 more

Evolution of transcriptional regulation of histidine metabolism in Gram-positive bacteria

BMC Genomics(2022)10.1186/s12864-022-08796-y

N/A

0DataRank · unranked

17 citations

Natalia V. Sernova, Aleksei Shevkoplias, Ivan D. Rodionov, Irina A. Rodionova, Alexey G. Vitreschak +3 more

Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli

Communications Biology(2021)10.1038/s42003-021-02516-0

N/A

0DataRank · unranked

25 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A. Rodionov +3 more

Biochemical and Regulatory Analyses of Xylanolytic Regulons in Caldicellulosiruptor bescii Reveal Genus-Wide Features of Hemicellulose Utilization

Applied and Environmental Microbiology(2022)10.1128/aem.01302-22

N/A

0DataRank · unranked

14 citations

Tunyaboon Laemthong, Ryan G. Bing, Ke Zhang, Tania N. N. Tanwee, Gina L. Lipscomb +5 more

Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria is Governed by a Global Transcriptional Regulator NagR

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.06.487429

N/A

0DataRank · unranked

3 citations

Aruto Nakajima, Mikiyasu Sakanaka, Miriam N. Ojima, Takane Katayama, Dmitry A. Rodionov +2 more

Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Nature(2021)10.1038/s41586-021-03671-4

N/A

0DataRank · unranked

141 citations

Chandni Desai, Arjun S. Raman, Robert Y. Chen, Matthew C. Hibberd, Jiye Cheng +20 more

Identifying determinants of bacterial fitness in a model of human gut microbial succession

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1918951117

N/A

0DataRank · unranked

54 citations

Arjun S. Raman, Matthew C. Hibberd, Jiye Cheng, Nicholas W. Griffin, Yangqing Peng +5 more

Prevotella copri -related effects of a therapeutic food for malnutrition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.11.553030

N/A

0DataRank · unranked

4 citations

Evan M. Lee, William Yi Wang, Cyrus Zhou, Kali M. Pruss, Suzanne Henrissat +27 more

Bioactive glycans in a microbiome-directed food for malnourished children

medRxiv(2023)10.1101/2023.08.14.23293998

N/A

0DataRank · unranked

2 citations

Daniel M. Webber, Dmitry A. Rodionov, Suzanne Henrissat, Robert Y. Chen, Cyrus Zhou +24 more

Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition

Nature Microbiology(2024)10.1038/s41564-024-01628-7

N/A

0DataRank · unranked

52 citations

Evan M. Lee, William Yi Wang, Cyrus Zhou, Kali M. Pruss, Suzanne Henrissat +27 more

A microbiome-directed therapeutic food for children recovering from severe acute malnutrition

Science Translational Medicine(2024)10.1126/scitranslmed.adn2366

N/A

0DataRank · unranked

17 citations

Matthew C. Hibberd, Ishita Mostafa, Nurun Nahar Naila, Md Munirul Islam, Mahabub Uz Zaman +17 more

Tungsten is utilized for lactate consumption and SCFA production by a dominant human gut microbe Eubacterium limosum

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2411809121

N/A

0DataRank · unranked

16 citations

Gerrit J. Schut, Michael P. Thorgersen, Farris L. Poole, Nana Shao, Dmitry A. Rodionov +2 more

Engineering ethanologenicity into the extremely thermophilic bacterium Anaerocellum (f. Caldicellulosiriuptor) bescii

Metabolic Engineering(2024)10.1016/j.ymben.2024.09.007

N/A

0DataRank · unranked

10 citations

Kathryne C. Ford, Daniel J. Willard, Mohamad J. H. Manesh, Christopher T. Straub, Tunyaboon Laemthong +10 more

Effects of intergenerational transmission of small intestinal bacteria cultured from stunted Bangladeshi children with enteropathy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.01.621574

N/A

0DataRank · unranked

6 citations

C.-Y. Kao, Alexandra Byrne, Robert Y. Chen, Blanda Di Luccia, Laura Karvelyte +16 more

Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.06.602360

N/A

0DataRank · unranked

3 citations

Dmitry A. Rodionov, Matthew Charles Hibberd, Janaki L. Guruge, James D Kent, Marat D. Kazanov +9 more

Comparative Genomic and Genetic Evidence on a Role for the OarX Protein in Thiamin Salvage

ACS Omega(2024)10.1021/acsomega.4c03514

N/A

0DataRank · unranked

0 citations

Dmitry A. Rodionov, Andrew D. Hanson, Edmar R. Oliveira-Filho

Human milk oligosaccharide metabolism and antibiotic resistance in early gut colonizers: insights from bifidobacteria and lactobacilli in the maternal-infant microbiome

Gut Microbes(2025)10.1080/19490976.2025.2501192

N/A

0DataRank · unranked

12 citations

Simone Renwick, Aleksandr A. Arzamasov, Dmitry A. Rodionov, Kennedy Spann, Raúl Cabrera‐Rubio +8 more

Binary Metabolic Phenotypes and Phenotype Diversity Metrics for the Functional Characterization of Microbial Communities

Frontiers in Microbiology(2021)10.3389/fmicb.2021.653314

N/A

0DataRank · unranked

13 citations

Pavel S. Novichkov, Andrei L. Osterman, Dmitry A. Rodionov, Stanislav N. Iablokov

Xylanolytic metabolism is regulated by coordination of transcription factors XynR and XylR in extremely thermophilic Caldicellulosiruptorales

Applied and Environmental Microbiology(2025)10.1128/aem.00516-25

N/A

0DataRank · unranked

0 citations

James R. Crosby, Tunyaboon Laemthong, Ryan G. Bing, Stefanie H. Chen, Jason Vailionis +6 more

A novel transcription factor PunR and Nac are involved in purine and purine nucleoside transporter punC regulation in E. coli

Research Square(2021)10.21203/rs.3.rs-146218/v1

N/A

0DataRank · unranked

3 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Reo Yoo, Dmitry A. Rodionov +3 more

Genomic reconstruction of short-chain fatty acid production by the human gut microbiota

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.949563

N/A

0DataRank · unranked

104 citations

Inna A. Suvorova, Stanislav N. Iablokov, Sergei N. Petrov, Dmitry A. Rodionov, M. S. Frolova

Human Milk Oligosaccharide Utilization in Intestinal Bifidobacteria Is Governed by Global Transcriptional Regulator NagR

mSystems(2022)10.1128/msystems.00343-22

N/A

0DataRank · unranked

38 citations

Aruto Nakajima, Mikiyasu Sakanaka, Miriam N. Ojima, Takane Katayama, Dmitry A. Rodionov +2 more

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Scientific Reports(2022)10.1038/s41598-022-11134-7

N/A

0DataRank · unranked

22 citations

Ye Gao, Jonathan M. Monk, Ying Hefner, Nicholas Wong, Richard Szubin +6 more