Amit A. Upadhyay

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 29 papers. Top paper: “Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans”.

Systems biological assessment of immunity to mild versus severe COVID-19 infection in humans

Science(2020)10.1126/science.abc6261

N/A

12.3DataRank · unranked

1345 citations

Florian Wimmers, Chris Ka Pun Mok, Ranawaka A. P. M. Perera, Madeleine Scott, Thomas Hagan +26 more

Baricitinib treatment resolves lower-airway macrophage inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques

Cell(2020)10.1016/j.cell.2020.11.007

N/A

0.804DataRank · unranked

212 citations

María Pino, Arun K. Boddapati, Elise G. Viox, Carly E. Starke, Amit A. Upadhyay +40 more

Early T follicular helper cell activity accelerates hepatitis C virus-specific B cell expansion

Journal of Clinical Investigation(2021)10.1172/jci140590

N/A

0.762DataRank · unranked

22 citations

Maude Boisvert, Amit A. Upadhyay, Nathalie Bédard, Sydney A. Nelson, Julie Bruneau +7 more

Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance

Cell(2020)10.1016/j.cell.2019.12.027

N/A

0.612DataRank · unranked

58 citations

Diane G. Carnathan, Bartek Nogal, Jacob T. Martin, Oscar L. Rodriguez, Amit A. Upadhyay +29 more

Modulation of type I interferon responses potently inhibits SARS-CoV-2 replication and inflammation in rhesus macaques

Science Immunology(2023)10.1126/sciimmunol.adg0033

N/A

0.505DataRank · unranked

28 citations

Timothy N. Hoang, Amit A. Upadhyay, Rayhane Nchioua, Maximilian Hirschenberger, Zachary Strongin +37 more

Clinical and whole genome characterization of SARS-CoV-2 in India

PLoS ONE(2021)10.1371/journal.pone.0246173

N/A

0.442DataRank · unranked

18 citations

K. Nagamani, Thrilok Chander Bingi, Raja Rao M., Kalyani Putty, Pankaj Singh Dholaniya +10 more

Primate resident memory T cells activate humoral and stromal immunity

Immunity(2025)10.1016/j.immuni.2025.09.009

N/A

0.441DataRank · unranked

11 citations

Benjamin N. Bimber, Clare F. Quarnstrom, Venkata S. Bollimpelli, Jason M. Schenkel, Kathryn Fraser +26 more

Natural killer-like B cells are a distinct but infrequent innate immune cell subset modulated by SIV infection of rhesus macaques

PLoS Pathogens(2024)10.1371/journal.ppat.1012223

N/A

0.312DataRank · unranked

7 citations

Amit A. Upadhyay, Griffin Woolley, Kyle Kroll, Karen Terry, Courtney A. Broedlow +4 more

Population-level genomic analysis of immunoglobulin loci variation in rhesus macaques reveals extensive germline diversity

Immunity(2026)10.1016/j.immuni.2025.12.002

N/A

0.269DataRank · unranked

5 citations

Amit A. Upadhyay, Vered Klein, Swati Saha, Oscar L. Rodriguez, Zachary M. Vanwinkle +29 more

Baricitinib treatment resolves lower airway inflammation and neutrophil recruitment in SARS-CoV-2-infected rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.16.300277

N/A

0.269DataRank · unranked

5 citations

María Pino, Arun K. Boddapati, Elise G. Viox, Carly E. Starke, Amit A. Upadhyay +38 more

Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques

PLoS Pathogens(2025)10.1371/journal.ppat.1012456

N/A

0.104DataRank · unranked

1 citations

Kirti A. Karunakaran, Elijah Garcia, Nathan Beutler, Matthew Gagné, Nadia Golden +29 more

TREM2+ and interstitial macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.05.463212

N/A

0DataRank · unranked

8 citations

Timothy N. Hoang, María Pino, Arun K. Boddapati, Elise G. Viox, Michelle Y. Lee +22 more

From Structure to Sequence: Identification of polyclonal antibody families using cryoEM

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.13.439712

N/A

0DataRank · unranked

1 citations

Charles A. Bowman, Robert N. Kirchdoerfer, Christopher A. Cottrell, Gabriel Ozorowski, Amit A. Upadhyay +14 more

Infiltration of inflammatory macrophages and neutrophils and widespread pyroptosis in lung drive influenza lethality in nonhuman primates

PLoS Pathogens(2022)10.1371/journal.ppat.1010395

N/A

0DataRank · unranked

56 citations

Gwenddolen Kettenburg, Amit A. Upadhyay, Megan Wallace, Michelle M. Martí, Elizabeth R. Wonderlich +8 more

From structure to sequence: Antibody discovery using cryoEM

Science Advances(2022)10.1126/sciadv.abk2039

N/A

0DataRank · unranked

50 citations

Charles A. Bowman, Robert N. Kirchdoerfer, Christopher A. Cottrell, Gabriel Ozorowski, Amit A. Upadhyay +14 more

A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence

PLoS Pathogens(2022)10.1371/journal.ppat.1010488

N/A

0DataRank · unranked

6 citations

Srirupa Chakraborty, Jie Yang, Anne Gleinich, Sailaja Gangadhara, Salar N. Khan +27 more

Modulation of type I interferon responses potently inhibits SARS-CoV-2 replication and inflammation in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.21.512606

N/A

0DataRank · unranked

9 citations

Elise G. Viox, Amit A. Upadhyay, Zachary Strongin, Gregory K. Tharp, María Pino +33 more

Intradermal but not intramuscular modified vaccinia Ankara immunizations protect against intravaginal tier2 simian-human immunodeficiency virus challenges in female macaques

Nature Communications(2023)10.1038/s41467-023-40430-7

N/A

0DataRank · unranked

17 citations

Pradeep B. J. Reddy, Sailaja Gangadhara, Tysheena P. Charles, Samantha L. Burton, Gregory K. Tharp +21 more

TREM2+ and interstitial-like macrophages orchestrate airway inflammation in SARS-CoV-2 infection in rhesus macaques

Nature Communications(2023)10.1038/s41467-023-37425-9

N/A

0DataRank · unranked

39 citations

Elise G. Viox, Timothy N. Hoang, Arun K. Boddapati, María Pino, Michelle Y. Lee +23 more

IL-21 and IFNα therapy rescues terminally differentiated NK cells and limits SIV reservoir in ART-treated macaques

Nature Communications(2021)10.1038/s41467-021-23189-7

N/A

0DataRank · unranked

42 citations

Nicolas Huot, Luca Micci, Gregory K. Tharp, Colin T. King, Philippe Rascle +13 more

High throughput analysis of B cell dynamics and neutralizing antibody development during immunization with a novel clade C HIV-1 envelope

PLoS Pathogens(2023)10.1371/journal.ppat.1011717

N/A

0DataRank · unranked

5 citations

Sarah Welbourn, Tysheena P. Charles, Pooja Ralli-Jain, David Rosales, Samantha L. Burton +10 more

A modified vaccinia Ankara vector-based vaccine protects macaques from SARS-CoV-2 infection, immune pathology, and dysfunction in the lungs

Immunity(2021)10.1016/j.immuni.2021.02.001

N/A

0DataRank · unranked

91 citations

Narayanaiah Cheedarla, Sailaja Gangadhara, Venkata S. Bollimpelli, Arun K. Boddapati, Ayalnesh Shiferaw +27 more

Frequency-potency analysis of IgG+ memory B cells delineates neutralizing antibody responses at single-cell resolution

Cell Reports(2024)10.1016/j.celrep.2024.113948

N/A

0DataRank · unranked

2 citations

Seo-Ho Oh, Catherine S. Yang, Hardik K. Nariya, Amanda Metz, Amit A. Upadhyay +17 more

Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.30.605768

N/A

0DataRank · unranked

0 citations

Christopher T Edwards, Kirti A. Karunakaran, Elijah Garcia, Nathan Beutler, Matthew Gagné +29 more

Diverse priming outcomes under conditions of very rare precursor B cells

Immunity(2025)10.1016/j.immuni.2025.03.003

N/A

0DataRank · unranked

14 citations

Ester Marina-Zárate, Kristen A. Rodrigues, Jon M. Steichen, Monolina Shil, Kaiyuan Ni +40 more

Systemic HIV and SIV latency reversal via non-canonical NF-κB signalling in vivo

Nature(2020)10.1038/s41586-020-1951-3

N/A

0DataRank · unranked

319 citations

Maud Mavigner, Gavin C. Sampey, Alyssa D. Brooks, Rae Ann Spagnuolo, David M. Irlbeck +38 more

Non-human primate LIBRA-Seq accelerates neutralizing antibody discovery in RM vaccinated against HIV-1

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.19.695353

N/A

0DataRank · unranked

0 citations

Aaron D. Silva Trenkle, Anusmita Sahoo, Kendra Cruickshank, Stacey A. Lapp, Nagarajan Raju +16 more

Tissue-specific transcriptional profiling of plasmacytoid dendritic cells reveals a hyperactivated state in chronic SIV infection

PLoS Pathogens(2021)10.1371/journal.ppat.1009674

N/A

0DataRank · unranked

17 citations

Amit A. Upadhyay, Hasse Walum, Chi Ngai Chan, Reem Dawoud, Christine Grech +17 more

Type I and Type III Interferons Restrict SARS-CoV-2 Infection of Human Airway Epithelial Cultures

Journal of Virology(2020)10.1128/jvi.00985-20

N/A

0DataRank · unranked

333 citations

Philipp Ralfs, Tatiana Chirkova, Amit A. Upadhyay, Matthew G. Zimmerman, Shamika Bedoya +16 more