John Sidney

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.632Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.946087

Top 31%

0.632DataRank

Top 31%8 citations

John Sidney, Renee Zhang, Richard H. Scheuermann, Bjoern Peters, Alessandro Sette +1 more

Papers

Driven by 56 papers — median percentile 69. Top paper: “Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees”.

Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433180

N/A

10.3DataRank · unranked

156 citations

John Sidney, Nils Methot, Yun Zhang, Jennifer M. Dan, Benjamin Goodwin +13 more

Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans

Science(2020)10.1126/science.abd3871

N/A

1.1DataRank · unranked

1276 citations

Alba Grifoni, Alison Tarke, John Sidney, Sydney I. Ramirez, Jennifer M. Dan +21 more

A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

Cell Host & Microbe(2020)10.1016/j.chom.2020.03.002

N/A

1.0DataRank · unranked

1079 citations

John Sidney, Yun Zhang, Richard H. Scheuermann, Bjoern Peters, Alessandro Sette +1 more

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100204

N/A

0.954DataRank · unranked

579 citations

John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu +17 more

Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs

Cell(2021)10.1016/j.cell.2021.05.046

N/A

0.768DataRank · unranked

166 citations

Susan Klaeger, Siranush Sarkizova, Leah R. Pearlman, Da‐Yuan Chen, Kathleen Gallagher +53 more

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.946087

Top 31%

0.632DataRank

Top 31%8 citations

John Sidney, Renee Zhang, Richard H. Scheuermann, Bjoern Peters, Alessandro Sette +1 more

Curation of complex, context-dependent immunological data

BMC Bioinformatics(2006)10.1186/1471-2105-7-341

N/A

0.520DataRank · unranked

31 citations

Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey +18 more

Immunological Interaction of HLA-DPB1 and Proteinase 3 in ANCA Vasculitis is Associated with Clinical Disease Activity

Journal of the American Society of Nephrology(2022)10.1681/asn.2021081142

N/A

0.489DataRank · unranked

25 citations

Elizabeth A. McInnis, Eveline Y. Wu, Katherine G. Stember, Susan L. Hogan, Yichun Hu +13 more

Pre-existing SARS-2-specific T cells are predicted to cross-recognize BA.2.86

Cell Host & Microbe(2023)10.1016/j.chom.2023.11.010

N/A

0.470DataRank · unranked

22 citations

John Sidney, Alba Grifoni, Alessandro Sette

Structural and biochemical analysis of highly similar HLA-B allotypes differentially associated with type 1 diabetes

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.107702

N/A

0.104DataRank · unranked

1 citations

Nitin Amdare, Agnidipta Ghosh, Jennifer Schloss, John Sidney, S. Garforth +6 more

Generation of a novel SARS-CoV-2 sub-genomic RNA due to the R203K/G204R variant in nucleocapsid: homologous recombination has potential to change SARS-CoV-2 at both protein and RNA level

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.10.029454

N/A

0DataRank · unranked

34 citations

Silvana Gaudieri, Matthew Parker, Abha Chopra, Ian James, Suman Pakala +15 more

Antigen-specific induction of CD4 + CD8αα + intraepithelial T lymphocytes by Bacteroidetes species

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.05.236513

N/A

0DataRank · unranked

4 citations

Preksha Bhagchandani, Mariya London, Mark Mimee, Scott W. Olesen, Mathilde Poyet +11 more

Identification and characterization of CD4+ T cell epitopes after Shingrix vaccination

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.29.227082

N/A

0DataRank · unranked

3 citations

Rory D. de Vries, John Sidney, Paul Rubiro, Erin Moore, Elizabeth J. Phillips +6 more

Dengue virus infection elicits highly polarized CX3CR1 + cytotoxic CD4 + T cells associated with protective immunity

UNC Libraries(2020)10.17615/rqcr-9x02

N/A

0DataRank · unranked

0 citations

Ravi V. Kolla, Aruna Dharshan De Silva, Bjoern Peters, Shane Crotty, Aravinda M. de Silva +4 more

Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100355

N/A

0DataRank · unranked

676 citations

John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M. Dan +16 more

SARS-CoV-2 human T cell epitopes: Adaptive immune response against COVID-19

Cell Host & Microbe(2021)10.1016/j.chom.2021.05.010

N/A

0DataRank · unranked

355 citations

John Sidney, Randi Vita, Bjoern Peters, Shane Crotty, Daniela Weiskopf +2 more

Functional HPV-specific PD-1+ stem-like CD8 T cells in head and neck cancer

Nature(2021)10.1038/s41586-021-03862-z

N/A

0DataRank · unranked

353 citations

Haydn Kissick, Mihir R. Patel, Maria A. Cardenas, Nataliya Prokhnevska, Rebecca C. Obeng +13 more

Broadly directed SARS-CoV-2-specific CD4+ T cell response includes frequently detected peptide specificities within the membrane and nucleoprotein in patients with acute and resolved COVID-19

PLoS Pathogens(2021)10.1371/journal.ppat.1009842

N/A

0DataRank · unranked

51 citations

Sophia Schulte, Matin Kohsar, Thomas Theo Brehm, Marissa Herrmann, Hendrik Karsten +9 more

Characterization of SARS‐CoV‐2 and common cold coronavirus‐specific T‐cell responses in MIS‐C and Kawasaki disease children

European Journal of Immunology(2021)10.1002/eji.202149556

N/A

0DataRank · unranked

20 citations

Alba Grifoni, John Sidney, Chisato Shimizu, Hiroko Shike, Nanda Ramchandar +5 more

Backbone Modifications of HLA-A2-Restricted Antigens Induce Diverse Binding and T Cell Activation Outcomes

Journal of the American Chemical Society(2021)10.1021/jacs.1c00016

N/A

0DataRank · unranked

18 citations

Caleb J. Randall, John Sidney, Alessandro Sette, Samuel H. Gellman, Ruslan Gibadullin

Identification and Characterization of Rift Valley Fever Virus-Specific T Cells Reveals a Dependence on CD40/CD40L Interactions for Prevention of Encephalitis

Journal of Virology(2021)10.1128/jvi.01506-21

N/A

0DataRank · unranked

14 citations

Haley N. Cartwright, Jessica R. Harmon, Jessica R. Spengler, Christina F. Spiropoulou, John Sidney +3 more

SARS-CoV-2-specific T cell responses and immune regulation in infected pregnant women

Journal of Reproductive Immunology(2021)10.1016/j.jri.2021.103464

N/A

0DataRank · unranked

16 citations

Alba Grifoni, Hiral Dave, Jasmine Wang, Diana Johnson, Jennifer A. Zellner +4 more

IgG Epitopes Processed and Presented by IgG+ B Cells Induce Suppression by Human Thymic-Derived Regulatory T Cells

The Journal of Immunology(2021)10.4049/jimmunol.2001009

N/A

0DataRank · unranked

7 citations

John Sidney, Jane C. Burns, David L. Boyle, Gary S. Firestein, Yoav Altman +3 more

SARS-CoV-2 vaccination induces immunological memory able to cross-recognize variants from Alpha to Omicron

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.28.474333

N/A

0DataRank · unranked

42 citations

Camila H. Coelho, Zeli Zhang, Jennifer M. Dan, Esther Dawen Yu, Nils Methot +12 more

Profiling Human CMV-specific T cell responses reveals novel immunogenic ORFs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.10.447997

N/A

0DataRank · unranked

0 citations

Sandeep Kumar Dhanda, John Pham, Gregory P. Williams, John Sidney, Alba Grifoni +5 more

SARS-CoV-2 vaccination induces immunological T cell memory able to cross-recognize variants from Alpha to Omicron

Cell(2022)10.1016/j.cell.2022.01.015

N/A

0DataRank · unranked

922 citations

Camila H. Coelho, Zeli Zhang, Jennifer M. Dan, Esther Dawen Yu, Nils Methot +12 more

Defining antigen targets to dissect vaccinia virus and monkeypox virus-specific T cell responses in humans

Cell Host & Microbe(2022)10.1016/j.chom.2022.11.003

N/A

0DataRank · unranked

70 citations

Yun Zhang, Alison Tarke, John Sidney, Paul Rubiro, Maria Reina-Campos +5 more

Predicting the Success of Fmoc-Based Peptide Synthesis

ACS Omega(2022)10.1021/acsomega.2c02425

N/A

0DataRank · unranked

21 citations

Ron Gutman, John Sidney, Leila Y. Chihab, Michele Mishto, Juliane Liepe +7 more

Defining antigen targets to dissect vaccinia virus (VACV) and Monkeypox virus (MPXV)-specific T cell responses in humans

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.06.506534

N/A

0DataRank · unranked

3 citations

Yun Zhang, Alison Tarke, John Sidney, Paul Rubiro, Maria Reina-Campos +5 more

T Cell Responses to SARS-CoV-2

Annual Review of Immunology(2023)10.1146/annurev-immunol-101721-061120

N/A

0DataRank · unranked

191 citations

John Sidney, Shane Crotty, Alessandro Sette

The MegaPool Approach to Characterize Adaptive CD4+ and CD8+ T Cell Responses

Current Protocols(2023)10.1002/cpz1.934

N/A

0DataRank · unranked

47 citations

Daniela Weiskopf, John Sidney, Paul Rubiro, Bjoern Peters, Cecilia S. Lindestam Arlehamn +3 more

T cell reactivity to Bordetella pertussis is highly diverse regardless of childhood vaccination

Cell Host & Microbe(2023)10.1016/j.chom.2023.06.015

N/A

0DataRank · unranked

25 citations

Emily Garrigan, Lorenzo Quiambao, Sandeep Kumar Dhanda, Daniel Marrama, Luise Westernberg +11 more

T cell deletional tolerance restricts AQP4 but not MOG CNS autoimmunity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2306572120

N/A

0DataRank · unranked

24 citations

Zahra Moinfar, Carson E. Moseley, Ravi Dandekar, Collin M. Spencer, A.S. Verkman +10 more

Thioamide Analogues of MHC I Antigen Peptides

Journal of the American Chemical Society(2023)10.1021/jacs.3c05300

N/A

0DataRank · unranked

17 citations

Rylie K. Morris, Jiani Niu, John Sidney, Alessandro Sette, Samuel H. Gellman +1 more

Correlative CD4 and CD8 T-cell immunodominance in humans and mice: Implications for preclinical testing

Cellular and Molecular Immunology(2023)10.1038/s41423-023-01083-0

N/A

0DataRank · unranked

13 citations

John Sidney, Alba Grifoni, Alessandro Sette, Tertuliano Alves Pereira Neto

Evidence for broad cross-reactivity of the SARS-CoV-2 NSP12-directed CD4+ T-cell response with pre-primed responses directed against common cold coronaviruses

Frontiers in Immunology(2023)10.3389/fimmu.2023.1182504

N/A

0DataRank · unranked

9 citations

Maria Mader, Hendrik Karsten, Leon Cords, Maximilian Knapp, Sophia Schulte +13 more

CD4+ T Cell Responses to Toxoplasma gondii Are a Double-Edged Sword

Vaccines(2023)10.3390/vaccines11091485

N/A

0DataRank · unranked

1 citations

Paulette A. Krishack, Ying Zhou, Christopher R. Weber, Joseph Lykins, Dragana Janković +14 more

Targets of influenza human T-cell response are mostly conserved in H5N1

mBio(2024)10.1128/mbio.03479-24

N/A

0DataRank · unranked

23 citations

A-Reum Kim, Rory D. de Vries, Bjoern Peters, Philip Meade, Florian Krammer +3 more

PINK1 is a target of T cell responses in Parkinson’s disease

Journal of Clinical Investigation(2024)10.1172/jci180478

N/A

0DataRank · unranked

21 citations

Antoine Freuchet, T. Michaelis, April Frazier, Ngan K. Tran, João Rodrigues Lima-Júnior +10 more

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines

Nature Communications(2024)10.1038/s41467-024-54734-9

N/A

0DataRank · unranked

12 citations

David Hamelin, Peter Kubiniok, Benoîte Bourdin, Fatima Mostefai, Raphaël Poujol +24 more

Preclinical evaluation of therapeutic vaccines for chronic hepatitis B that stimulate antiviral activities of T cells and NKT cells

JHEP Reports(2024)10.1016/j.jhepr.2024.101038

N/A

0DataRank · unranked

7 citations

Sarah L. Draper, Olivia K. Burn, R. J. Anderson, Benjamin J. Compton, Ching‐Wen Tang +18 more

PINK1 is a target of T cell responses in Parkinson’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.09.579465

N/A

0DataRank · unranked

10 citations

T. Michaelis, João Rodrigues Lima-Júnior, April Frazier, Ngan K. Tran, Elizabeth J. Phillips +9 more

Targets of influenza Human T cell response are mostly conserved in H5N1

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.09.612060

N/A

0DataRank · unranked

3 citations

A-Reum Kim, Rory D. de Vries, Bjoern Peters, Philip Meade, Florian Krammer +3 more

Integrating Machine Learning-Enhanced Immunopeptidomics and SARS-CoV-2 Population-Scale Analyses Unveils Novel Antigenic Features for Next-Generation COVID-19 Vaccines

Research Square(2024)10.21203/rs.3.rs-3914861/v1

N/A

0DataRank · unranked

2 citations

Kevin A. Kovalchik, David Hamelin, Peter Kubiniok, Benoîte Bourdin, Fatima Mostefai +22 more

Highly conserved Betacoronavirus sequences are broadly recognized by human T cells

Cell(2025)10.1016/j.cell.2025.07.015

N/A

0DataRank · unranked

11 citations

Christian M. Zmasek, Liliana Avalos, John Sidney, Raphael Trevizani, Elizabeth J. Phillips +7 more

β-amino acid substitution in the SIINFEKL antigen alters immunological recognition

Cancer Biology & Therapy(2025)10.1080/15384047.2025.2486141

N/A

0DataRank · unranked

4 citations

John A. Mannone, Ruslan Gibadullin, Jena E. Moseman, John Sidney, A Sette +3 more

The GF-NEO discovery platform unveils a [KQE][DG] sequence motif within fusion neoantigens in pediatric cancer

iScience(2025)10.1016/j.isci.2025.114512

N/A

0DataRank · unranked

0 citations

Zhaoguan Wu, Frederic Saab, Tristan St-Laurent, Lou Nielly Thibault, Charles B. Beauparlant +16 more

Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction

Cell(2020)10.1016/j.cell.2020.09.015

N/A

0DataRank · unranked

541 citations

Marit M. van Buuren, Kristen K. Dang, Vanessa M. Hubbard-Lucey, Kathleen C. F. Sheehan, Katie M. Campbell +95 more

Epitope prediction and identification- adaptive T cell responses in humans

Seminars in Immunology(2020)10.1016/j.smim.2020.101418

N/A

0DataRank · unranked

87 citations

Bjoern Peters, Alessandro Sette, John Sidney

An effective CTL peptide vaccine for Ebola Zaire Based on Survivors’ CD8+ targeting of a particular nucleocapsid protein epitope with potential implications for COVID-19 vaccine design

Vaccine(2020)10.1016/j.vaccine.2020.04.034

N/A

0DataRank · unranked

65 citations

Scott Burkholz, John Sidney, Alessandro Sette, Paul E. Harris, Shane Massey +11 more

Identification of Novel Yellow Fever Class II Epitopes in YF-17D Vaccinees

Viruses(2020)10.3390/v12111300

N/A

0DataRank · unranked

11 citations

Alba Grifoni, Hannah Voic, Michael A. Angelo, Elizabeth J. Phillips, S. Mallal +4 more

HLA Class I Binding of Mutant EGFR Peptides in NSCLC Is Associated With Improved Survival

Journal of Thoracic Oncology(2020)10.1016/j.jtho.2020.08.023

N/A

0DataRank · unranked

13 citations

Paul Grewe, John Sidney, Alessandro Sette, Paul J. Norman, Robert C. Doebele +1 more

Comparison of HLA ligand elution data and binding predictions reveals varying prediction performance for the multiple motifs recognized by HLA‐DQ2.5

Immunology(2020)10.1111/imm.13279

N/A

0DataRank · unranked

12 citations

John Sidney, William D. Chronister, Bjoern Peters, Alessandro Sette, Zeynep Koşaloğlu

Detection of EXP1-Specific CD4+ T Cell Responses Directed Against a Broad Range of Epitopes Including Two Promiscuous MHC Class II Binders During Acute Plasmodium falciparum Malaria

Frontiers in Immunology(2020)10.3389/fimmu.2019.03037

N/A

0DataRank · unranked

9 citations

Nils H. Wildner, Christin Ackermann, Melanie Wittner, Matthias Marget, Alessandro Sette +4 more

Impact of Cysteine Residues on MHC Binding Predictions and Recognition by Tumor-Reactive T Cells

The Journal of Immunology(2020)10.4049/jimmunol.1901173

N/A

0DataRank · unranked

30 citations

Eugene Moore, Zeynep Koşaloğlu, Bjoern Peters, John Sidney, Steven A. Rosenberg +3 more

Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.08.416750

N/A

0DataRank · unranked

87 citations

John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu +17 more

John Sidney

Indexed papers

Top data-sharing exemplar

Papers