🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

John Arévalo

ORCID: 0000-0002-1138-5036
Biochemistry, Genetics and Molecular BiologyComputer ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
4.5Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

Nature Methods(2024)10.1038/s41592-024-02241-6
Top 8%
2.7DataRank
Top 8%124 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Papers

Driven by 15 papers — median percentile 90. Top paper: “Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations”.

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

Nature Methods(2024)10.1038/s41592-024-02241-6
Top 8%
2.7DataRank
Top 8%124 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.05.475090
Top 12%
1.8DataRank
Top 12%51 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Reproducible image-based profiling with Pycytominer

PubMed(2023)10.48550/arxiv.2311.13417
N/A
0.538DataRank · unranked
18 citations

Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I. Brewer, Jenna Tomkinson, Roshan Kern +23 more

Morphological map of under- and overexpression of genes in human cells

Nature Methods(2025)10.1038/s41592-025-02753-9
N/A
0.385DataRank · unranked
12 citations

Eric Alix, John Arévalo, Adriana Borowa, Patrick J. Byrne, William G Charles +51 more

Learning Molecular Representation in a Cell

PubMed(2024)10.48550/arxiv.2406.12056
N/A
0.312DataRank · unranked
7 citations

Srijit Seal, John Arévalo, Zhenwen Liang, Anne E. Carpenter, Meng Jiang +2 more

Alternate dyes for image-based profiling assays

SLAS DISCOVERY(2025)10.1016/j.slasd.2025.100268
N/A
0.208DataRank · unranked
3 citations

Patrick J. Byrne, Alán F. Muñoz, John Arévalo, Anne E. Carpenter, Shantanu Singh +3 more

Alternate dyes for image-based profiling assays

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.19.639058
N/A
0.104DataRank · unranked
1 citations

Patrick J. Byrne, Alán F. Muñoz, John Arévalo, Anne E. Carpenter, Shantanu Singh +3 more

A versatile information retrieval framework for evaluating profile strength and similarity

Nature Communications(2025)10.1038/s41467-025-60306-2
N/A
0DataRank · unranked
18 citations

John Arévalo, Erik Serrano, Loan Vulliard, Hillary Tsang, Michael Bornholdt +7 more

Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning

PLoS Computational Biology(2024)10.1371/journal.pcbi.1012547
N/A
0DataRank · unranked
8 citations

John Arévalo, Mehrtash Babadi, Anne E. Carpenter, Shantanu Singh, Robert van Dijk

Evaluating batch correction methods for image-based cell profiling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.15.558001
N/A
0DataRank · unranked
23 citations

Ellen Su, Robert van Dijk, Anne E. Carpenter, Shantanu Singh, John Arévalo

Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567038
N/A
0DataRank · unranked
5 citations

John Arévalo, Mehrtash Babadi, Anne E. Carpenter, Shantanu Singh, Robert van Dijk

Cell Painting Gallery: an open resource for image-based profiling

Nature Methods(2024)10.1038/s41592-024-02399-z
N/A
0DataRank · unranked
40 citations

Ankur Kumar, John Arévalo, Anne E. Carpenter, Beth A. Cimini, Shantanu Singh +1 more

Cell Painting predicts impact of lung cancer variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.18.469171
N/A
0DataRank · unranked
8 citations

John Arévalo, Federica Piccioni, Mark‐Anthony Bray, Cathy L Hartland, Xiaoyun Wu +6 more

A versatile information retrieval framework for evaluating profile strength and similarity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.01.587631
N/A
0DataRank · unranked
15 citations

John Arévalo, Erik Serrano, Loan Vulliard, Hillary Tsang, Michael Bornholdt +7 more

MOTIVE: A Drug-Target Interaction Graph For Inductive Link Prediction

arXiv (Cornell University)(2024)10.48550/arxiv.2406.08649
N/A
0DataRank · unranked
0 citations

Ellen Su, Anne E. Carpenter, Shantanu Singh, John Arévalo