🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Siddharth S. Dey

University of California, Santa Barbara

ORCID: 0000-0002-1161-1654
Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Prior Fc receptor activation primes macrophages for increased sensitivity to IgG via long-term and short-term mechanisms”.

Prior Fc receptor activation primes macrophages for increased sensitivity to IgG via long-term and short-term mechanisms

Developmental Cell(2024)10.1016/j.devcel.2024.07.017
N/A
0.576DataRank · unranked
16 citations

Sareen Fiaz, Kirstin Rollins, Jazz Elaiza Q. Nario, E. Snyder, Dixon J. Atkins +6 more

Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development

Nature Communications(2021)10.1038/s41467-021-21532-6
N/A
0DataRank · unranked
29 citations

Dylan Mooijman, Alex Chialastri, Jean-Charles Boisset, Mina Popovic, Björn Heindryckx +4 more

A probabilistic framework for cellular lineage reconstruction using integrated single-cell 5-hydroxymethylcytosine and genomic DNA sequencing

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100060
N/A
0DataRank · unranked
8 citations

Alex Chialastri, Javier Frias Aldeguer, Nicolas Rivron, Siddharth S. Dey, Chatarin Wangsanuwat

Integrated single-cell sequencing of 5-hydroxymethylcytosine and genomic DNA using scH&G-seq

STAR Protocols(2021)10.1016/j.xpro.2021.101016
N/A
0DataRank · unranked
0 citations

Chatarin Wangsanuwat, Siddharth S. Dey, Alex Chialastri

Integrated single-cell sequencing reveals principles of epigenetic regulation of human gastrulation and germ cell development in a 3D organoid model

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.10.479957
N/A
0DataRank · unranked
5 citations

Eyal Karzbrun, Aimal H. Khankhel, Monte J. Radeke, Sebastian J. Streichan, Siddharth S. Dey +1 more

Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.06.539708
N/A
0DataRank · unranked
4 citations

Saumya Sarkar, Elizabeth E. Schauer, Shyl Lamba, Siddharth S. Dey, Alex Chialastri

Survival-Associated Cellular Response Maintained in Pancreatic Ductal Adenocarcinoma (PDAC) Switched Between Soft and Stiff 3D Microgel Culture

ACS Biomaterials Science & Engineering(2024)10.1021/acsbiomaterials.3c01079
N/A
0DataRank · unranked
14 citations

Jonah Rosas, Lisa K. Månsson, Nima Shahverdi, Siddharth S. Dey, Angela A. Pitenis +1 more

Combinatorial quantification of 5mC and 5hmC at individual CpG dyads and the transcriptome in single cells reveals modulators of DNA methylation maintenance fidelity

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01291-w
N/A
0DataRank · unranked
10 citations

Saumya Sarkar, Elizabeth E. Schauer, Shyl Lamba, Siddharth S. Dey, Alex Chialastri

Sp1 mechanotransduction regulates breast cancer cell invasion in engineered viscoelastic extracellular matrices

Biomaterials(2025)10.1016/j.biomaterials.2025.123755
N/A
0DataRank · unranked
6 citations

Rowan F. Steger, Jin-guang LI, Samuel Y. Fong, Neha Saxena, Jane A. Baude +4 more

Joint profiling of 5mC, 5hmC, and the transcriptome in single cells identifies factors responsible for genome-wide DNA methylation erasure in human primordial germ cell maturation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.01.646736
N/A
0DataRank · unranked
1 citations

Kellie A. Heom, Joanna J. Gell, Fei‐Man Hsu, Sissy E. Wamaitha, Amander T. Clark +2 more

An Extended Culture System that Supports Human Primordial Germ Cell-like Cell Survival and Initiation of DNA Methylation Erasure

Stem Cell Reports(2020)10.1016/j.stemcr.2020.01.009
N/A
0DataRank · unranked
49 citations

Wanlu Liu, Enrique Sosa, Alex Chialastri, Grace Hancock, Yu Tao +5 more

Photolabile oligonucleotides combined with topologically imposed light gradients enable spatially resolved single-cell transcriptomics and epigenomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.01.679703
N/A
0DataRank · unranked
0 citations

Alex Chialastri, Chieh Wang, Mikolaj Godzik, Kellie A. Heom, Weiyue Wang +3 more