Richard Szubin

Also affiliated with La Jolla Bioengineering Institute

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.780Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

ACS Synthetic Biology(2021)10.1021/acssynbio.1c00337

Top 39%

0.489DataRank

Top 39%15 citations

Daniel C. Zielinski, James T. Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang +9 more

Papers

Driven by 34 papers — median percentile 44. Top paper: “Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media”.

Identifying the effect of vancomycin on health care–associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media

GigaScience(2021)10.1093/gigascience/giaa156

N/A

0.548DataRank · unranked

15 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

Escherichia coli Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

ACS Synthetic Biology(2021)10.1021/acssynbio.1c00337

Top 39%

0.489DataRank

Top 39%15 citations

Daniel C. Zielinski, James T. Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang +9 more

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

mSystems(2024)10.1128/msystems.00305-24

N/A

0.484DataRank · unranked

20 citations

Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C. Zielinski +2 more

Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii

mSystems(2024)10.1128/msystems.00606-23

N/A

0.343DataRank · unranked

7 citations

Saugat Poudel, Anand V. Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon +7 more

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220

Top 56%

0.292DataRank

Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant Candida albicans isolate causing cerebral abscess

Current Research in Microbial Sciences(2023)10.1016/j.crmicr.2023.100180

N/A

0.241DataRank · unranked

4 citations

Alison Coady, Richard Szubin, Thomas Martin, Bernhard Ø. Palsson, Victor Nizet +2 more

CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli

Communications Biology(2024)10.1038/s42003-024-06831-0

N/A

0.184DataRank · unranked

2 citations

Hyun Gyu Lim, Ye Gao, Dmitry A. Rodionov, Ying Hutchison, Richard Szubin +4 more

Characterizing the response of Acinetobacter baumannii ATCC 17978 to azithromycin in multiple in vitro growth conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.19.079962

N/A

0DataRank · unranked

2 citations

Yara Seif, Hannah Tsunemoto, Saugat Poudel, Michael J. Meehan, Richard Szubin +15 more

Identifying the effect of vancomycin on HA-MRSA strains using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.079640

N/A

0DataRank · unranked

0 citations

Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson +14 more

The Early Interferon Alpha Subtype Response in Infant Macaques Infected Orally With SIV

UNC Libraries(2020)10.17615/agcw-ec34

N/A

0DataRank · unranked

0 citations

Nicole Baumgarth, Richard Szubin, Samantha M. Lantz, Juliet Easlick, Kristina Abel

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

Communications Biology(2021)10.1038/s42003-021-02339-z

N/A

0DataRank · unranked

39 citations

Yara Seif, George Sakoulas, Connor A. Olson, Ying Hefner, Amitesh Anand +6 more

Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications

Cell Reports(2021)10.1016/j.celrep.2021.108961

N/A

0DataRank · unranked

27 citations

Connor A. Olson, Anand V. Sastry, Arjun Patel, Richard Szubin, Laurence Yang +3 more

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

mSphere(2021)10.1128/msphere.00443-21

N/A

0DataRank · unranked

21 citations

Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu +5 more

Rapid resistance development to three antistaphylococcal therapies in antibiotic-tolerant staphylococcus aureus bacteremia

PLoS ONE(2021)10.1371/journal.pone.0258592

N/A

0DataRank · unranked

14 citations

Jonathan M. Monk, Richard Szubin, Andrew D. Berti, Christopher R. Miller

Data-Driven Strain Design Using Aggregated Adaptive Laboratory Evolution Mutational Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.19.452699

Top 100%

0DataRank

Top 100%0 citations

Daniel C. Zielinski, James T. Yurkovich, Josefin Johnsen, Richard Szubin, Lei Yang +8 more

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

Nature Communications(2022)10.1038/s41467-022-30877-5

N/A

0DataRank · unranked

31 citations

Arjun Patel, Ke Chen, Connor A. Olson, Patrick V. Phaneuf, Cameron Lamoureux +5 more

Machine learning fromPseudomonas aeruginosatranscriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

Nucleic Acids Research(2022)10.1093/nar/gkac187

N/A

0DataRank · unranked

43 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

Nucleic Acids Research(2022)10.1093/nar/gkac743

N/A

0DataRank · unranked

36 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Scientific Reports(2022)10.1038/s41598-022-11134-7

N/A

0DataRank · unranked

22 citations

Ye Gao, Jonathan M. Monk, Ying Hefner, Nicholas Wong, Richard Szubin +6 more

Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487013

N/A

0DataRank · unranked

1 citations

Arjun Patel, Ke Chen, Connor A. Olson, Patrick V. Phaneuf, Cameron Lamoureux +5 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487074

N/A

0DataRank · unranked

0 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

Global pathogenomic analysis identifies known and candidate genetic antimicrobial resistance determinants in twelve species

Nature Communications(2023)10.1038/s41467-023-43549-9

N/A

0DataRank · unranked

20 citations

Jonathan M. Monk, Richard Szubin, Ying Hefner, Bernhard Ø. Palsson, Jason C. Hyun

Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance

Cell Reports(2023)10.1016/j.celrep.2023.113105

N/A

0DataRank · unranked

24 citations

Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin +11 more

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

Research Square(2023)10.21203/rs.3.rs-2729651/v1

N/A

0DataRank · unranked

9 citations

Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C. Zielinski +2 more

Global pathogenomic analysis identifies known and novel genetic antimicrobial resistance determinants in twelve species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542542

N/A

0DataRank · unranked

1 citations

Jonathan M. Monk, Richard Szubin, Ying Hefner, Bernhard Ø. Palsson, Jason C. Hyun

Machine learning reveals the transcriptional regulatory network and circadian dynamics of Synechococcus elongatus PCC 7942

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2410492121

N/A

0DataRank · unranked

12 citations

Tahani Al Bulushi, Anand V. Sastry, Cigdem Sancar, Richard Szubin, Susan S. Golden +2 more

Genetic Determinants Enabling Medium-Dependent Adaptation to Nafcillin in Methicillin-Resistant Staphylococcus aureus

mSystems(2020)10.1128/msystems.00828-19

N/A

0DataRank · unranked

12 citations

Henrique Machado, Nicholas Dillon, Hannah Tsunemoto, Richard Szubin, Samira Dahesh +6 more

PMkbase (version 1.0): an interactive web-based tool for tracking bacterial metabolic traits using phenotype microarrays made interoperable with sequence information and visualizing/processing PM data

Microbiology Spectrum(2025)10.1128/spectrum.03279-24

N/A

0DataRank · unranked

3 citations

Ying Hefner, Richard Szubin, Jonathan M. Monk, David T. Pride, Bernhard Ø. Palsson +1 more

High-Quality Genome-Scale Models From Error-Prone, Long-Read Assemblies

Frontiers in Microbiology(2020)10.3389/fmicb.2020.596626

N/A

0DataRank · unranked

4 citations

Richard Szubin, Charles J. Norsigian, Jonathan M. Monk, Bernhard Ø. Palsson, Mary N. Parenteau +1 more

Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators and role in key physiological responses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997296

N/A

0DataRank · unranked

8 citations

Hannah Tsunemoto, Yara Seif, Anand V. Sastry, Richard Szubin, Sibei Xu +7 more

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077271

N/A

0DataRank · unranked

7 citations

Nick Dillon, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin +4 more

PtrR (YneJ) is a novel E. coli transcription factor regulating the putrescine stress response and glutamate utilization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.065417

N/A

0DataRank · unranked

7 citations

Ye Gao, Anand V. Sastry, Jonathan M. Monk, Nicholas Wong, Richard Szubin +5 more

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.07.138933

N/A

0DataRank · unranked

5 citations

Yara Seif, George Sakoulas, Connor A. Olson, Richard Szubin, Bernhard Ø. Palsson +3 more

Profiling the effect of nafcillin on HA-MRSA D592 using bacteriological and physiological media

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.070904

N/A

0DataRank · unranked

3 citations

Saugat Poudel, Hannah Tsunemoto, Richard Szubin, Michael J. Meehan, Connor A. Olson +15 more

Richard Szubin

Indexed papers

Top data-sharing exemplar

Papers