🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fabiana M. Duarte

Hospital do Divino Espírito Santo

ORCID: 0000-0002-1261-4929
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850231
Top 100%
0DataRank
Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Papers

Driven by 16 papers — median percentile 0. Top paper: “Inference and effects of barcode multiplets in droplet-based single-cell assays”.

Inference and effects of barcode multiplets in droplet-based single-cell assays

Nature Communications(2020)10.1038/s41467-020-14667-5
N/A
2.1DataRank · unranked
76 citations

Sai Ma, Fabiana M. Duarte, Jason D. Buenrostro, Caleb A. Lareau

Systematic benchmarking of single-cell ATAC-sequencing protocols

Nature Biotechnology(2023)10.1038/s41587-023-01881-x
N/A
1.1DataRank · unranked
52 citations

Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens +42 more

Functional Inference of Gene Regulation using Single-Cell Multi-Omics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.453784
N/A
1.1DataRank · unranked
21 citations

Fabiana M. Duarte, Yan Hu, Sai Ma, Jennifer Chew, Caleb A. Lareau +6 more

Multiscale footprints reveal the organization of cis-regulatory elements

Nature(2025)10.1038/s41586-024-08443-4
N/A
0.928DataRank · unranked
52 citations

Max A. Horlbeck, Ruochi Zhang, Sai Ma, Rojesh Shrestha, Vinay K. Kartha +17 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2020)10.1016/j.ccell.2020.06.006
N/A
0.820DataRank · unranked
236 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Caleb A. Lareau +13 more

Cell of origin epigenetic priming determines susceptibility to Tet2 mutation

Nature Communications(2024)10.1038/s41467-024-48508-6
N/A
0.488DataRank · unranked
13 citations

Vinay K. Kartha, Fabiana M. Duarte, Trine Kristiansen, Christina Mayerhofer, Rojesh Shrestha +7 more

Early transcriptional effects of inflammatory cytokines reveal highly redundant cytokine networks

The Journal of Experimental Medicine(2025)10.1084/jem.20241207
N/A
0.406DataRank · unranked
14 citations

Liang Yang, Jonathan J. Kotzin, Dughan Ahimovic, Michael J. Bale, Peter A. Nigrović +83 more

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

Cancer Cell(2025)10.1016/j.ccell.2025.02.025
N/A
0.165DataRank · unranked
2 citations

Vinay K. Kartha, Sai Ma, Kevin Meli, Isabella Del Priore, Santiago Naranjo +13 more

HBO1 functions as an epigenetic barrier to hepatocyte plasticity and reprogramming during liver injury

Cell stem cell(2025)10.1016/j.stem.2025.04.010
N/A
0DataRank · unranked
4 citations

Andrew Earl, Sai Ma, Karel P. Alcedo, Jacquelyn O. Russell, Fabiana M. Duarte +11 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850231
Top 100%
0DataRank
Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Defining data-driven primary transcript annotations with primaryTranscriptAnnotation in R

Bioinformatics(2020)10.1093/bioinformatics/btaa011
N/A
0DataRank · unranked
18 citations

Fabiana M. Duarte, Mete Civelek, Michael J. Guertin, Warren D. Anderson

Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription

Genes & Development(2020)10.1101/gad.341768.120
N/A
0DataRank · unranked
79 citations

Fabiana M. Duarte, John T. Lis, Julius Judd

Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.10.087262
N/A
0DataRank · unranked
4 citations

Fabiana M. Duarte, John T. Lis, Julius Judd

Deep learning-based enhancement of epigenomics data with AtacWorks

Nature Communications(2021)10.1038/s41467-021-21765-5
N/A
0DataRank · unranked
59 citations

Zachary Chiang, Nikolai Yakovenko, Fabiana M. Duarte, Johnny Israeli, Jason D. Buenrostro +1 more

The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac223
N/A
0DataRank · unranked
7 citations

S. V. Satya Prakash Avva, Mukesh Maharjan, Fabiana M. Duarte, Jacob M. Tome, Julius Judd +6 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850232
Top 100%
0DataRank
Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more