🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Juan C. Caicedo

Broad Institute

ORCID: 0000-0002-1277-4631

Also affiliated with University of Wisconsin–Madison, Morgridge Institute for Research

Biochemistry, Genetics and Molecular BiologyEngineeringComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.2Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

Nature Methods(2024)10.1038/s41592-024-02241-6
Top 8%
2.7DataRank
Top 8%124 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Papers

Driven by 12 papers — median percentile 88. Top paper: “Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations”.

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

Nature Methods(2024)10.1038/s41592-024-02241-6
Top 8%
2.7DataRank
Top 8%124 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.05.475090
Top 12%
1.8DataRank
Top 12%51 citations

Beth A. Cimini, Amy Goodale, Lisa Miller, Maria Kost‐Alimova, Nasim Jamali +18 more

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

Cytometry Part A(2019)10.1002/cyto.a.23863
N/A
0.870DataRank · unranked
330 citations

Jonathan Roth, James W. Fairman, Tim Becker, Kyle W. Karhohs, Matthieu Broisin +7 more

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.08.459417
Top 25%
0.790DataRank
Top 25%19 citations

Juan C. Caicedo, Beth A. Cimini, Anne E. Carpenter, Shantanu Singh, Marzieh Haghighi

Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/335216
N/A
0.470DataRank · unranked
22 citations

Jonathan Roth, James W. Fairman, Tim Becker, Kyle W. Karhohs, Matthieu Broisin +7 more

Unbiased single-cell morphology with self-supervised vision transformers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545359
N/A
0DataRank · unranked
42 citations

Théo Moutakanni, Zitong Chen, Nikita Moshkov, Mathilde Caron, Hugo Touvron +4 more

Cell-DINO: Self-supervised image-based embeddings for cell fluorescent microscopy

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013828
N/A
0DataRank · unranked
2 citations

Camille Couprie, Seungeun Yi, Michael Doron, Zitong S. Chen, Nikita Moshkov +8 more

Progress and new challenges in image-based profiling.

Molecular Systems Biology(2025)10.1038/s44320-026-00197-7
N/A
0DataRank · unranked
1 citations

John A. Peters, Jesko Wagner, Rebecca E. Graham, Zhenghao Chen, Brian Feng +17 more

Predicting compound activity from phenotypic profiles and chemical structures

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.15.422887
N/A
0DataRank · unranked
24 citations

Tim Becker, Kevin Yang, Péter Horváth, Vlado Dančík, Bridget K. Wagner +5 more

Cell Painting predicts impact of lung cancer variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.18.469171
N/A
0DataRank · unranked
8 citations

John Arévalo, Federica Piccioni, Mark‐Anthony Bray, Cathy L Hartland, Xiaoyun Wu +6 more

Learning representations for image-based profiling of perturbations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.12.503783
N/A
0DataRank · unranked
45 citations

Michael Bornholdt, Santiago Benoit, Matthew Smith, Claire McQuin, Allen Goodman +9 more

Predicting compound activity from phenotypic profiles and chemical structures

Nature Communications(2023)10.1038/s41467-023-37570-1
N/A
0DataRank · unranked
107 citations

Tim Becker, Kevin Yang, Péter Horváth, Vlado Dančík, Bridget K. Wagner +5 more