Alexander J. Hartemink

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “An ensemble model of competitive multi-factor binding of the genome”.

An ensemble model of competitive multi-factor binding of the genome

Genome Research(2009)10.1101/gr.093450.109

N/A

4.2DataRank · unranked

111 citations

Alexander J. Hartemink, Todd Wasson

Core and region-enriched networks of behaviorally regulated genes and the singing genome

Science(2014)10.1126/science.1256780

N/A

2.7DataRank · unranked

127 citations

Andreas R. Pfenning, Jason T. Howard, Charles A Blatti, Fang Liu, James M. Ward +11 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Quantitative occupancy of myriad transcription factors from one DNase experiment enables efficient comparisons across conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.28.171587

N/A

0DataRank · unranked

2 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Linking the dynamics of chromatin occupancy and transcription with predictive models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.28.176545

N/A

0DataRank · unranked

2 citations

Heather K. MacAlpine, Vinay Tripuraneni, Sneha Mitra, David M. MacAlpine, Alexander J. Hartemink +1 more

Cell-Cycle–Dependent Chromatin Dynamics at Replication Origins

Genes(2021)10.3390/genes12121998

N/A

0DataRank · unranked

7 citations

Alexander J. Hartemink, David M. MacAlpine, Yulong Li

Linking the dynamics of chromatin occupancy and transcription with predictive models

Genome Research(2021)10.1101/gr.267237.120

N/A

0DataRank · unranked

12 citations

Heather K. MacAlpine, Vinay Tripuraneni, Sneha Mitra, David M. MacAlpine, Alexander J. Hartemink +1 more

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

Genome Research(2022)10.1101/gr.272203.120

N/A

0DataRank · unranked

3 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase

Genome Research(2023)10.1101/gr.278273.123

N/A

0DataRank · unranked

9 citations

Heather K. MacAlpine, Alexander J. Hartemink, David M. MacAlpine, B.J. Chen

Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.541209

N/A

0DataRank · unranked

3 citations

Heather K. MacAlpine, Alexander J. Hartemink, David M. MacAlpine, B.J. Chen

Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis

Nature Genetics(2024)10.1038/s41588-024-01689-8

N/A

0DataRank · unranked

69 citations

Ro Malik, Wilfred Wong, A. Rahman, Alexander J. Hartemink, Yuri Pritykin +3 more

Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595391

N/A

0DataRank · unranked

1 citations

Yulong Li, Alexander J. Hartemink, David M. MacAlpine, Kevin Moyung

Inferring differential protein binding from time-series chromatin accessibility data

Bioinformatics Advances(2024)10.1093/bioadv/vbaf080

N/A

0DataRank · unranked

0 citations

Alexander J. Hartemink, Sneha Mitra

Comprehensive profiling of chromatin occupancy dynamics through the cell cycle

Nucleic Acids Research(2025)10.1093/nar/gkaf1385

N/A

0DataRank · unranked

1 citations

David M MacAlpine, Alexander J. Hartemink, Yulong Li

Genome-wide nucleosome and transcription factor responses to genetic perturbations reveal chromatin-mediated mechanisms of transcriptional regulation

Genome Research(2025)10.1101/gr.279637.124

N/A

0DataRank · unranked

1 citations

Yulong Li, Heather K. MacAlpine, Alexander J. Hartemink, David M. MacAlpine, Kevin Moyung