🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Aedín C. Culhane

University of Limerick

ORCID: 0000-0002-1395-9734

Also affiliated with University Hospital Limerick

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.1Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study

Nature Communications(2020)10.1038/s41467-020-18849-z
Top 7%
3.3DataRank
Top 7%107 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Papers

Driven by 27 papers — median percentile 61. Top paper: “Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study”.

Deep phenotyping of 34,128 adult patients hospitalised with COVID-19 in an international network study

Nature Communications(2020)10.1038/s41467-020-18849-z
Top 7%
3.3DataRank
Top 7%107 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Genome-scale screens identify factors regulating tumor cell responses to natural killer cells

Nature Genetics(2021)10.1038/s41588-021-00889-w
N/A
2.5DataRank · unranked
98 citations

Emily Lowry, Nicky A. Beelen, Minasri Borah, Suha Naffar-Abu Amara, Chris Mader +26 more

Deep phenotyping of 34,128 patients hospitalised with COVID-19 and a comparison with 81,596 influenza patients in America, Europe and Asia: an international network study

medRxiv(2020)10.1101/2020.04.22.20074336
Top 9%
2.5DataRank
Top 9%48 citations

Seng Chan You, Anthony G. Sena, Kristin Kostka, Hamed Abedtash, Maria Tereza Fernandes Abrahão +64 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x
N/A
0.918DataRank · unranked
454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Trends in Genetics(2018)10.1016/j.tig.2018.07.003
N/A
0.837DataRank · unranked
264 citations

Raman Arora, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene, Loyal A. Goff +7 more

Functional Genomics Identify Distinct and Overlapping Genes Mediating Resistance to Different Classes of Heterobifunctional Degraders of Oncoproteins

Cell Reports(2021)10.1016/j.celrep.2020.108532
N/A
0.716DataRank · unranked
117 citations

Geoffrey M. Matthews, Sara Gandolfi, Ricardo De Matos Simoes, Dennis L. Buckley, Joseline Raja +34 more

Characteristics and Outcomes of Over 300,000 Patients with COVID-19 and History of Cancer in the United States and Spain

Cancer Epidemiology Biomarkers & Prevention(2021)10.1158/1055-9965.epi-21-0266
Top 34%
0.576DataRank
Top 34%10 citations

Andrea Pistillo, Martina Recalde, Anthony G. Sena, Sergio Fernández‐Bertolín, María Aragón +48 more

Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02433-9
N/A
0.436DataRank · unranked
15 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466079
Top 45%
0.415DataRank
Top 45%4 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +7 more

Curated single cell multimodal landmark datasets for R/Bioconductor

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011324
Top 48%
0.375DataRank
Top 48%7 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +6 more

Learning and teaching biological data science in the Bioconductor community

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012925
N/A
0.241DataRank · unranked
4 citations

Frederick J. Tan, Fabricio Almeida‐Silva, Robert Castelo, Aedín C. Culhane, Sean Davis +13 more

Enter the matrix: factorization uncovers knowledge from omics Names/Affiliations

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/196915
N/A
0.241DataRank · unranked
4 citations

Raman Arora, Aedín C. Culhane, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene +7 more

Safety of hydroxychloroquine, alone and in combination with azithromycin, in light of rapid wide-spread use for COVID-19: a multinational, network cohort and self-controlled case series study

medRxiv(2020)10.1101/2020.04.08.20054551
N/A
0DataRank · unranked
133 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +56 more

Taxonomy of breast cancer based on normal cell phenotype predicts outcome

UNC Libraries(2020)10.17615/0thj-r760
N/A
0DataRank · unranked
1 citations

Ankita Thakkar, Bin Wang, Tan A. Ince, Matthew Schwede, Rulla M. Tamimi +11 more

Impact of Data Preprocessing on Integrative Matrix Factorization of Single Cell Data

Frontiers in Oncology(2020)10.3389/fonc.2020.00973
N/A
0DataRank · unranked
16 citations

Aedín C. Culhane, Lauren Hsu

Risk of hydroxychloroquine alone and in combination with azithromycin in the treatment of rheumatoid arthritis: a multinational, retrospective study

The Lancet Rheumatology(2020)10.1016/s2665-9913(20)30276-9
N/A
0DataRank · unranked
153 citations

James Weaver, Kristin Kostka, Talita Duarte‐Salles, Maria Tereza Fernandes Abrahão, Heba Alghoul +57 more

Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469874
N/A
0DataRank · unranked
5 citations

Aedín C. Culhane, Lauren Hsu

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/vzc0-qk25
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Characteristics and outcomes of 118,155 COVID-19 individuals with a history of cancer in the United States and Spain

medRxiv(2021)10.1101/2021.01.12.21249672
Top 100%
0DataRank
Top 100%0 citations

Andrea Pistillo, Martina Recalde, Anthony G. Sena, Sergio Fernández‐Bertolín, María Aragón +48 more

Genome-scale functional genomics identify genes preferentially essential for multiple myeloma cells compared to other neoplasias

Nature Cancer(2023)10.1038/s43018-023-00550-x
N/A
0DataRank · unranked
41 citations

Ryosuke Shirasaki, Sondra L. Downey-Kopyscinski, Geoffrey M. Matthews, Benjamin G. Barwick, Vikas A. Gupta +36 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02468-y
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Correspondence analysis for dimension reduction, batch integration, and visualization of single-cell RNA-seq data

Scientific Reports(2023)10.1038/s41598-022-26434-1
N/A
0DataRank · unranked
22 citations

Aedín C. Culhane, Lauren Hsu

Data from Epithelial Progeny of Estrogen-Exposed Breast Progenitor Cells Display a Cancer-like Methylome

(2023)10.1158/0008-5472.c.6497237
N/A
0DataRank · unranked
0 citations

Aedín C. Culhane, Michael W.Y. Chan, Chinnambally Venkataramu, Mathias Ehrich, Aejaz Nasir +8 more

Data from Identification of Novel Kinase Targets for the Treatment of Estrogen Receptor–Negative Breast Cancer

(2023)10.1158/1078-0432.c.6516967
N/A
0DataRank · unranked
0 citations

Anna Tsimelzon, K. Sexton, Ashley M. Herrick, Carolina Gutiérrez, Aedín C. Culhane +5 more

Data from Altered Cytoplasmic-to-Nuclear Ratio of Survivin Is a Prognostic Indicator in Breast Cancer

(2023)10.1158/1078-0432.c.6517153.v1
N/A
0DataRank · unranked
0 citations

Elton Rexhepaj, Sallyann L. O’Brien, Elaine McSherry, Darran P. O’Connor, Ailís Fagan +9 more

Data from Identification of Novel Kinase Targets for the Treatment of Estrogen Receptor–Negative Breast Cancer

(2023)10.1158/1078-0432.c.6516967.v1
N/A
0DataRank · unranked
0 citations

Anna Tsimelzon, K. Sexton, Ashley M. Herrick, Carolina Gutiérrez, Aedín C. Culhane +5 more

Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/96cj-z232
N/A
0DataRank · unranked
0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more