🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Trevor Pesout

ORCID: 0000-0002-1443-7970
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
17.8Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0
Top 3%
6.0DataRank
Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

Papers

Driven by 12 papers — median percentile 95. Top paper: “Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes”.

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0503-6
N/A
12.8DataRank · unranked
655 citations

Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth +27 more

Towards complete and error-free genome assemblies of all vertebrate species

Nature(2021)10.1038/s41586-021-03451-0
Top 3%
6.0DataRank
Top 3%3155 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w
N/A
5.0DataRank · unranked
318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Towards complete and error-free genome assemblies of all vertebrate species

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.110833
Top 5%
4.3DataRank
Top 5%195 citations

Shane A McCarthy, Olivier Fédrigo, Joana Damas, Giulio Formenti, Sergey Koren +95 more

precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.13.380741
Top 11%
2.0DataRank
Top 11%67 citations

Justin Wagner, Jennifer McDaniel, Sarah H. Stephens, Samuel T. Westreich, Anish G. Prasanna +68 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543
Top 50%
0.352DataRank
Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523790
N/A
0DataRank · unranked
31 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

Nature Methods(2021)10.1038/s41592-021-01299-w
N/A
0DataRank · unranked
332 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +9 more

Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.04.433952
N/A
0DataRank · unranked
32 citations

Trevor Pesout, Pi-Chuan Chang, Maria Nattestad, Alexey Kolesnikov, Sidharth Goel +8 more

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

Nature Biotechnology(2022)10.1038/s41587-022-01221-5
N/A
0DataRank · unranked
121 citations

John E. Gorzynski, Kishwar Shafin, Dianna G. Fisk, Trevor Pesout, Tanner Jensen +24 more

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

Nature Methods(2023)10.1038/s41592-023-01993-x
N/A
0DataRank · unranked
143 citations

Kimberley J. Billingsley, Mira Mastoras, Melissa Meredith, Jean Monlong, Ryan Lorig-Roach +25 more