Abhyudai Singh

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.2Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cell size distribution of lineage data: Analytic results and parameter inference

iScience(2021)10.1016/j.isci.2021.102220

Top 18%

1.2DataRank

Top 18%50 citations

Abhyudai Singh, Ramon Grima, Chen Jia

Papers

Driven by 74 papers — median percentile 82. Top paper: “Subcellular localization of the J-protein Sis1 regulates the heat shock response”.

Subcellular localization of the J-protein Sis1 regulates the heat shock response

Journal of Cell Biology(2021)10.1083/jcb.202005165

N/A

1.5DataRank · unranked

60 citations

Asif Ali, Abhyudai Singh, Joanna Krakowiak, Xu Zheng, Vytas P. Bindokas +4 more

Cell size distribution of lineage data: Analytic results and parameter inference

iScience(2021)10.1016/j.isci.2021.102220

Top 18%

1.2DataRank

Top 18%50 citations

Abhyudai Singh, Ramon Grima, Chen Jia

Single-Cell Approach Reveals Intercellular Heterogeneity in Phage-Producing Capacities

Microbiology Spectrum(2022)10.1128/spectrum.02663-21

N/A

1.0DataRank · unranked

32 citations

Gabriella Oken, Jonathan Shadan, David Musheyev, Kevin Singh, Abhyudai Singh +2 more

Memory Sequencing Reveals Heritable Single-Cell Gene Expression Programs Associated with Distinct Cellular Behaviors

Cell(2020)10.1016/j.cell.2020.07.003

N/A

0.803DataRank · unranked

210 citations

Benjamin Emert, Raúl A. Reyes Hueros, Christopher Coté, Guillaume Harmange, Dylan L. Schaff +7 more

Reduction in gene expression noise by targeted increase in accessibility at gene loci

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2018640118

N/A

0.614DataRank · unranked

59 citations

Ryan J. Dikdan, Supravat Dey, Abhyudai Singh, Sanjay Tyagi, LaTasha C. R. Fraser

Transcriptional regulation of Sis1 promotes fitness but not feedback in the heat shock response

eLife(2023)10.7554/elife.79444

N/A

0.556DataRank · unranked

19 citations

Abhyudai Singh, Asif Ali, David Pincus, Rania Garde

Noise suppression in stochastic genetic circuits using PID controllers

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009249

N/A

0.529DataRank · unranked

33 citations

Supravat Dey, Abhyudai Singh, Saurabh Modi

The fission yeast cell size control system integrates pathways measuring cell surface area, volume, and time

Current Biology(2023)10.1016/j.cub.2023.06.054

N/A

0.510DataRank · unranked

29 citations

Cesar A. Vargas-García, Abhyudai Singh, James B. Moseley, Kristi E. Miller

Subcellular localization of the J-protein Sis1 regulates the heat shock response

bioRxiv (Cold Spring Harbor Laboratory)10.1101/2020.04.02.022491

N/A

0.422DataRank · unranked

7 citations

Asif Ali, Abhyudai Singh, Joanna Krakowiak, Xu Zheng, Vytas P. Bindokas +4 more

Trehalose catalytic shift inherently enhances phenotypic heterogeneity and multidrug resistance in Mycobacterium tuberculosis

Nature Communications(2025)10.1038/s41467-025-61703-3

N/A

0.381DataRank · unranked

10 citations

Daniel H. Swanson, Sun-Kyoung Lee, Stephanie Dihardjo, Gi Yong Lee, Sree Gelle +11 more

Diverse role of decoys on emergence and precision of oscillations in a biomolecular clock

Biophysical Journal(2021)10.1016/j.bpj.2021.11.013

N/A

0.339DataRank · unranked

8 citations

Abhyudai Singh, Supravat Dey

The role of incoherent feedforward circuits in regulating precision of event timing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.17.100420

N/A

0.292DataRank · unranked

6 citations

Sherin Kannoly, Pavol Bokes, John J. Dennehy, Abhyudai Singh, Supravat Dey

Evaluating single-cell variability in proteasomal decay

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.22.554358

N/A

0.165DataRank · unranked

2 citations

Abhyudai Singh, Premal Shah, Sukanya Das

Lineage memory shapes viral resistance barriers in human skin

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.27.661951

N/A

0.104DataRank · unranked

1 citations

Grant Kinsler, Jingchao Zhang, Aoife O’Farrell, Rim Abderrahim, Apurv Srivastav +9 more

Anoikis resistance and metastasis of ovarian cancer can be overcome by CDK8/19 Mediator kinase inhibition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569970

N/A

0.104DataRank · unranked

1 citations

Resha Rajkarnikar, Emily Faith Page, Asha Kumari, Liz Quintero-Macías, Felipe Massicano +12 more

A Single-Cell Approach Reveals Variation in Cellular Phage-Producing Capacities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.19.465070

N/A

0DataRank · unranked

3 citations

Gabriella Oken, Jon Shadan, David Musheyev, Kevin Singh, Abhyudai Singh +2 more

Density Fluctuations Yield Distinct Growth and Fitness Effects in Single Bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.14.444254

N/A

0DataRank · unranked

1 citations

Abhyudai Singh, Scott Dhuey, Armando G. McDonald, Daniel Weinreich, Andreas E. Vasdekis +1 more

Protein sensors of bacterial kinase activity reveal antibiotic-dependent kinase activation in single cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.27.446034

N/A

0DataRank · unranked

0 citations

Abhyudai Singh, Alexandra Libby, Pamela A. Silver, Elizabeth A. Libby, Christine R. Zheng

An Optimal Lysis Time Maximizes Bacteriophage Fitness in Quasi-Continuous Culture

mBio(2022)10.1128/mbio.03593-21

N/A

0DataRank · unranked

22 citations

Abhyudai Singh, John J. Dennehy, Sherin Kannoly

Density fluctuations, homeostasis, and reproduction effects in bacteria

Communications Biology(2022)10.1038/s42003-022-03348-2

N/A

0DataRank · unranked

13 citations

Abhyudai Singh, Scott Dhuey, Armando G. McDonald, Daniel Weinreich, Andreas E. Vasdekis +1 more

Gene copy number and negative feedback differentially regulate transcriptional variability of segmentation clock genes

iScience(2022)10.1016/j.isci.2022.104579

N/A

0DataRank · unranked

13 citations

Kemal Keseroǧlu, Supravat Dey, Ahmet Ay, Abhyudai Singh, Ertuğrul M. Özbudak +1 more

Cell growth rates coordinate across the width of the leaf to remain flat

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.01.514736

N/A

0DataRank · unranked

10 citations

Brendan Lane, Antoine Fruleux, Gabriella Mosca, Soeren Strauss, Nik Tavakolian +7 more

Cell size regulation and proliferation fluctuations in single-cell derived colonies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.05.498901

N/A

0DataRank · unranked

5 citations

Cesar A. Vargas-García, Juan Manuel Pedraza, Abhyudai Singh, César Nieto

Regulatory strategies to schedule threshold crossing of protein levels at a prescribed time

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.27.482184

N/A

0DataRank · unranked

4 citations

Khem Raj Ghusinga, Abhyudai Singh, César Nieto

Stochastic analysis of frequency bandwidth and noise attenuation in neurotransmission

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.01.486751

N/A

0DataRank · unranked

4 citations

Abhyudai Singh, Zahra Vahdat

Exact distribution of the quantal content in synaptic transmission

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.28.522121

N/A

0DataRank · unranked

3 citations

Nicolas I. C. Müller, Eckhard Friauf, Abhyudai Singh, Ashok Prasad, Dibyendu Das +1 more

Induction of Sis1 promotes fitness but not feedback in the heat shock response

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.27.489698

N/A

0DataRank · unranked

1 citations

Abhyudai Singh, Asif Ali, David Pincus, Rania Garde

Disrupting cellular memory to overcome drug resistance

Nature Communications(2023)10.1038/s41467-023-41811-8

N/A

0DataRank · unranked

53 citations

Raúl A. Reyes Hueros, Dylan L. Schaff, Benjamin Emert, Michael Saint-Antoine, Laura C. Kim +9 more

The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian

Science Advances(2023)10.1126/sciadv.adh5138

N/A

0DataRank · unranked

45 citations

James Holehouse, Abhyudai Singh, Ramon Grima, Silke Hauf, Douglas E. Weidemann

A heritable iron memory enables decision-making in Escherichia coli

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2309082120

N/A

0DataRank · unranked

31 citations

Nabin Bhattarai, Dylan M. Pfannenstiel, Brady Wilkins, Abhyudai Singh, Rasika M. Harshey +1 more

Reversible Transitions in a Fluctuation Assay Modify the Tail of Luria–Delbrück Distribution

Axioms(2023)10.3390/axioms12030249

N/A

0DataRank · unranked

3 citations

Anna Hlubinová, Abhyudai Singh, Pavol Bokes

A cell-based model for size control in the multiple fission alga Chlamydomonas reinhardtii

Current Biology(2023)10.1016/j.cub.2023.10.023

N/A

0DataRank · unranked

8 citations

Cesar A. Vargas-García, Abhyudai Singh, James G. Umen, Dianyi Liu

Coupling Bacterial Cell Size Regulation with Clonal Proliferation Dynamics Reveals Cell Division Based on Surface Area

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.26.573217

N/A

0DataRank · unranked

6 citations

Sarah Täuber, Luisa Blöbaum, Zahra Vahdat, Alexander Grünberger, Abhyudai Singh +1 more

Characterizing the role of autaptic feedback in enhancing precision of neuronal firing times

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.06.561207

N/A

0DataRank · unranked

4 citations

Oliver Gambrell, Abhyudai Singh, Zahra Vahdat

The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531283

N/A

0DataRank · unranked

2 citations

Abhyudai Singh, Ramon Grima, Silke Hauf, Douglas E. Weidemann

Benchmarking Gene Regulatory Network Inference Methods on Simulated and Experimental Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.12.540581

N/A

0DataRank · unranked

1 citations

Abhyudai Singh, Michael Saint-Antoine

Mechanisms of Cell Size Regulation in Slow-Growing Escherichia coli Cells: Discriminating Models Beyond the Adder

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.11.557238

N/A

0DataRank · unranked

0 citations

Cesar A. Vargas-García, Juan Manuel Pedraza, Abhyudai Singh, César Nieto

Evolution of a bistable genetic system in fluctuating and nonfluctuating environments

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2322371121

N/A

0DataRank · unranked

21 citations

David R. Olivenza, Esther Weyer, Abhyudai Singh, Josep Casadesús, María Antonia Sánchez-Romero +1 more

Exact Distribution of the Quantal Content in Synaptic Transmission

Physical Review Letters(2024)10.1103/physrevlett.132.228401

N/A

0DataRank · unranked

14 citations

Nicolas I. C. Müller, Eckhard Friauf, Abhyudai Singh, Ashok Prasad, Dibyendu Das +1 more

Mechanisms of cell size regulation in slow-growing Escherichia coli cells: discriminating models beyond the adder

npj Systems Biology and Applications(2024)10.1038/s41540-024-00383-z

N/A

0DataRank · unranked

13 citations

Cesar A. Vargas-García, Juan Manuel Pedraza, Abhyudai Singh, César Nieto

Flagellar motility is mutagenic

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2412541121

N/A

0DataRank · unranked

12 citations

Shelby Lopez, Abhyudai Singh, Rasika M. Harshey, Souvik Bhattacharyya

Preexisting cell state rather than stochastic noise confers high or low infection susceptibility of human lung epithelial cells to adenovirus

mSphere(2024)10.1128/msphere.00454-24

N/A

0DataRank · unranked

9 citations

Maarit Suomalainen, Vardan Andriasyan, Abhyudai Singh, Urs F. Greber, Anthony Petkidis

A Moments-Based Analytical Approach for Cell Size Homeostasis

IEEE Control Systems Letters(2024)10.1109/lcsys.2024.3411041

N/A

0DataRank · unranked

10 citations

Cesar A. Vargas-García, Abhyudai Singh, César Nieto

Translation regulation by RNA stem-loops can reduce gene expression noise

BMC Bioinformatics(2024)10.1186/s12859-024-05939-8

N/A

0DataRank · unranked

1 citations

Pavol Bokes, Abhyudai Singh, Candan Çelik

Stochastic Gene Expression in Proliferating Cells: Differing Noise Intensity in Single-Cell and Population Perspectives

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.28.601263

N/A

0DataRank · unranked

6 citations

Iryna Zabaikina, César Nieto, Zahra Vahdat, Pavol Bokes, Abhyudai Singh +1 more

A Generalized Adder mechanism for Cell Size Homeostasis: Implications for Stochastic Dynamics of Clonal Proliferation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.612972

N/A

0DataRank · unranked

2 citations

Cesar A. Vargas-García, Abhyudai Singh, César Nieto

Trehalose catalytic shift is an intrinsic factor in Mycobacterium tuberculosis that enhances phenotypic heterogeneity and multidrug resistance

Research Square(2024)10.21203/rs.3.rs-4999164/v1

N/A

0DataRank · unranked

1 citations

Jae Jin Lee, Daniel Swanson, Sun-Kyung Lee, Stephanie Dihardjo, Gi Yong Lee +10 more

Bacterial cell size modulation along the growth curve across nutrient conditions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614723

N/A

0DataRank · unranked

1 citations

Claudia Igler, Abhyudai Singh, César Nieto

Evolution of a bistable genetic system in fluctuating and non-fluctuating environments

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.22.576666

N/A

0DataRank · unranked

0 citations

David R. Olivenza, Esther Weyer, Abhyudai Singh, Josep Casadesús, María Antonia Sánchez-Romero +1 more

Flagellar Motility is Mutagenic

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.21.600093

N/A

0DataRank · unranked

0 citations

Shelby Lopez, Abhyudai Singh, Rasika M. Harshey, Souvik Bhattacharyya

Noisy hemoglobin consumption by erythrocytic Plasmodium falciparum parasites: origins and possible implications

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.16.613038

N/A

0DataRank · unranked

0 citations

Abhyudai Singh, S Arenal López, Shirley Luckhart, Andreas E. Vasdekis, Joseph R Perko

Priestia megaterium cells are primed for surviving lethal doses of antibiotics and chemical stress

Communications Biology(2025)10.1038/s42003-025-07639-2

N/A

0DataRank · unranked

18 citations

Abhyudai Singh, Nicholas C. Butzin, Manisha Guha

A generalized adder for cell size homeostasis: Effects on stochastic clonal proliferation

Biophysical Journal(2025)10.1016/j.bpj.2025.03.011

N/A

0DataRank · unranked

9 citations

Cesar A. Vargas-García, Abhyudai Singh, César Nieto

Cyclo-Stationary Distributions of mRNA and Protein Counts for Random Cell Division Times

PRX Life(2025)10.1103/ysj3-gkrr

N/A

0DataRank · unranked

2 citations

Amarnath Saran, Ashok Prasad, Abhyudai Singh, Dibyendu Das, Syed Yunus Ali

Robust inhibitory glycinergic transmission and the effect of bafilomycin, folimycin and EIPA: lessons from the auditory brainstem

Frontiers in Cellular Neuroscience(2025)10.3389/fncel.2025.1625868

N/A

0DataRank · unranked

1 citations

Lina N. Hofmann, Abhyudai Singh, Eckhard Friauf, Erika Pizzi

Regulation of Transcriptional Bursting and Spatial Patterning in Early Drosophila Embryo Development

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651973

N/A

0DataRank · unranked

2 citations

Zahra Vahdat, Bomyi Lim, Abhyudai Singh, César Nieto

Cyclo-stationary distributions of mRNA and Protein counts for random cell division times

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.06.658238

N/A

0DataRank · unranked

1 citations

Aditya Saran, Ashok Prasad, Abhyudai Singh, Dibyendu Das, Syed Yunus Ali

Induced tolerance to UV stress drives survival heterogeneity in isogenic E. coli cell populations

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.14.654146

N/A

0DataRank · unranked

0 citations

Midai Tanoue, Junko S. Takeuchi, E. Matsuo, Yasuhito Shimada, Abhyudai Singh +1 more

Enhancer Placement Impacts Transcriptional Dynamics in Drosophila Embryos

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.14.670187

N/A

0DataRank · unranked

0 citations

Jiayi Wu, Samantha Fallacaro, Emma Dreispiel Juan, Robert T. Trudeau, Jose Andres Vidal +5 more

Exploring single-cell biosynthetic noise and dynamics for enhanced betaxanthin production in Escherichia coli

Nature Communications(2025)10.1038/s41467-025-67733-1

N/A

0DataRank · unranked

0 citations

Alexander C. Schmitz, Zhenya Ding, Wei Li, Abhyudai Singh, Fuzhong Zhang +1 more

Gene Networks with Transcriptional Bursting Recapitulate Rare Transient Coordinated High Expression States in Cancer

Cell Systems(2020)10.1016/j.cels.2020.03.004

N/A

0DataRank · unranked

101 citations

Michael Saint-Antoine, Eric M. Sanford, Benjamin Emert, Abhyudai Singh, Carsten Marr +3 more

Optimum Threshold Minimizes Noise in Timing of Intracellular Events

iScience(2020)10.1016/j.isci.2020.101186

N/A

0DataRank · unranked

46 citations

Tianhui Gao, Supravat Dey, Ing‐Nang Wang, Abhyudai Singh, John J. Dennehy +1 more

Enhancement of gene expression noise from transcription factor binding to genomic decoy sites

Scientific Reports(2020)10.1038/s41598-020-65750-2

N/A

0DataRank · unranked

32 citations

Mohammad Soltani, Abhyudai Singh, Supravat Dey

Network inference in systems biology: recent developments, challenges, and applications

Current Opinion in Biotechnology(2020)10.1016/j.copbio.2019.12.002

N/A

0DataRank · unranked

2 citations

Abhyudai Singh, Michael Saint-Antoine

Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.273029

N/A

0DataRank · unranked

14 citations

Jayu Jen, Shaowen Jiang, Azin Sayad, Arvind Singh Mer, Kevin R. Brown +19 more

An Optimal Lysis Time Maximizes Bacteriophage Fitness in Quasi-continuous Culture

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.089508

N/A

0DataRank · unranked

10 citations

Abhyudai Singh, John J. Dennehy, Sherin Kannoly

Transcription coordinates histone amounts and genome content

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.272492

N/A

0DataRank · unranked

10 citations

Daniela Bureik, Petia Adarska, Abhyudai Singh, Kurt M. Schmoller, Kora-Lee Claude

Controlling Temporal Precision in Protein Levels with Dynamic External Disturbances

OSF Preprints (OSF Preprints)(2020)10.31219/osf.io/thkve

N/A

0DataRank · unranked

0 citations

Abhyudai Singh, Khem Raj Ghusinga

Transcription coordinates histone amounts and genome content

Nature Communications(2021)10.1038/s41467-021-24451-8

N/A

0DataRank · unranked

62 citations

Daniela Bureik, Dimitra Chatzitheodoridou, Petia Adarska, Abhyudai Singh, Kurt M. Schmoller +1 more

The dopamine membrane transporter plays an active modulatory role in synaptic dopamine homeostasis

Journal of Neuroscience Research(2021)10.1002/jnr.24965

N/A

0DataRank · unranked

30 citations

Katarzyna D. Rosikon, Abhyudai Singh, Harbinder S. Dhillon, Rosaria Formisano

Epigenetically regulated digital signaling defines epithelial innate immunity at the tissue level

Nature Communications(2021)10.1038/s41467-021-22070-x

N/A

0DataRank · unranked

29 citations

Connor McKenney, Nathan M. Livingston, Ariel Gershman, Seema Sajjan, Isaac S. Chan +6 more

Glycinergic Transmission in the Presence and Absence of Functional GlyT2: Lessons From the Auditory Brainstem

Frontiers in Synaptic Neuroscience(2021)10.3389/fnsyn.2020.560008

N/A

0DataRank · unranked

28 citations

Ayse Maraslioglu-Sperber, Catharina Kurz, Florian Kramer, Martin F. Fuhr, Abhyudai Singh +2 more

A transient heritable memory regulates HIV reactivation from latency

iScience(2021)10.1016/j.isci.2021.102291

N/A

0DataRank · unranked

25 citations

Harpal Singh, Abhyudai Singh, Roy D. Dar, Yiyang Lu

Insights on the Control of Yeast Single-Cell Growth Variability by Members of the Trehalose Phosphate Synthase (TPS) Complex

Frontiers in Cell and Developmental Biology(2021)10.3389/fcell.2021.607628

N/A

0DataRank · unranked

2 citations

Michael Saint-Antoine, Cathy Maugis-Rabusseau, Jean François, Abhyudai Singh, Jean‐Luc Parrou +2 more

Abhyudai Singh

Indexed papers

Top data-sharing exemplar

Papers