🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Fostering Data Sharing

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Empowering the data sharing that empowers science — an open, citation-grounded index for datasets.

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Dennis Kostka

Dennis Kostka

University of Pittsburgh

ORCID: 0000-0002-1460-5487

Also affiliated with Carnegie Mellon University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Apoptosis of hematopoietic progenitor-derived adipose tissue–resident macrophages contributes to insulin resistance after myocardial infarction”.

Apoptosis of hematopoietic progenitor-derived adipose tissue–resident macrophages contributes to insulin resistance after myocardial infarction

Science Translational Medicine(2020)10.1126/scitranslmed.aaw0638

N/A

0.982DataRank · unranked

24 citations

Emilie Coppin, Xinyi Zhang, Jonathan Florentin, Sasha Koul, Matthias Götberg +11 more

A cis-regulatory module underlies retinal ganglion cell genesis and axonogenesis

Cell Reports(2024)10.1016/j.celrep.2024.114291

N/A

0.344DataRank · unranked

7 citations

Marwa Daghsni, Reza Raeisossadati, Zhongli Xu, Emily Jane Davis, Abigail Naidich +10 more

Single cell RNA sequencing reveals differential cell cycle activity in key cell populations during nephrogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.16.300293

N/A

0.282DataRank · unranked

4 citations

Débora M. Cerqueira, Andrew Clugston, Jacqueline Ho, Dennis Kostka, Abha Bais

Spatial transcriptome profiling uncovers metabolic regulation of left-right patterning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.21.537827

N/A

0.104DataRank · unranked

1 citations

Cheng Cui, Manush Saydmohammed, George C. Gabriel, Candice N. Baker, William A. Devine +10 more

Single-cell transcriptomic analysis identifies murine heart molecular features at embryonic and neonatal stages

Nature Communications(2022)10.1038/s41467-022-35691-7

N/A

0DataRank · unranked

98 citations

Abha Bais, Haoting He, Cassandra Rios, Shan Jiang, Juan Xu +4 more

Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease

Cell stem cell(2022)10.1016/j.stem.2022.03.003

N/A

0DataRank · unranked

86 citations

Kang Jin, Abha Bais, Wenjuan Zhu, Hisato Yagi, Timothy N. Feinstein +18 more

Computational profiling of hiPSC-derived heart organoids reveals chamber defects associated with NKX2-5 deficiency

Communications Biology(2022)10.1038/s42003-022-03346-4

N/A

0DataRank · unranked

65 citations

Hannah Schriever, Shan Jiang, Abha Bais, Haodi Wu, Dennis Kostka +2 more

Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data

Bioinformatics(2022)10.1093/bioinformatics/btac136

N/A

0DataRank · unranked

3 citations

Maziyar Baran Pouyan, Dennis Kostka, Maria Chikina, Weiguang Mao

Vaeda computationally annotates doublets in single-cell RNA sequencing data

Bioinformatics(2022)10.1093/bioinformatics/btac720

N/A

0DataRank · unranked

6 citations

Dennis Kostka, Hannah Schriever

Vaeda computationally annotates doublets in single-cell RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.15.488440

N/A

0DataRank · unranked

0 citations

Dennis Kostka, Hannah Schriever

An intrinsically interpretable neural network architecture for sequence-to-function learning

Bioinformatics(2023)10.1093/bioinformatics/btad271

N/A

0DataRank · unranked

6 citations

Mark Maher Ebeid, Panayiotis V. Benos, Dennis Kostka, Maria Chikina, Ali Tuğrul Balcı

Isolation and Preparation of Embryonic Zebrafish Retinal Cells for Single-Cell RNA Sequencing

Methods in molecular biology(2024)10.1007/978-1-0716-4087-6_6

N/A

0DataRank · unranked

2 citations

Dennis Kostka, Hannah Schriever, Jeffrey M. Gross, Shea A. Heilman

Genomic rare variant mechanisms for congenital cardiac laterality defect: A digenic model approach

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.05.014

N/A

0DataRank · unranked

8 citations

Jonathan Klonowski, Bo Yuan, Karen J. Coveler, Zain Dardas, Iman Egab +15 more

Single-cell RNA sequencing reveals differential cell cycle activity in key cell populations during nephrogenesis

Scientific Reports(2021)10.1038/s41598-021-01790-6

N/A

0DataRank · unranked

11 citations

Débora M. Cerqueira, Andrew Clugston, Andrew J. Bodnar, Jacqueline Ho, Dennis Kostka +1 more

Chromatin accessibility and microRNA expression in nephron progenitor cells during kidney development

Genomics(2021)10.1016/j.ygeno.2021.12.017

N/A

0DataRank · unranked

8 citations

Andrew J. Bodnar, Débora M. Cerqueira, Yu Leng Phua, Alyssa J. Lawler, Kristy Boggs +4 more

iPSC modeling shows uncompensated mitochondrial mediated oxidative stress underlies early heart failure in hypoplastic left heart syndrome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.09.443165

N/A

0DataRank · unranked

5 citations

Kang Jin, Abha Bais, Wenjuan Zhu, Hisato Yagi, Timothy N. Feinstein +16 more