Benjamin K. Johnson

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Carbon dioxide regulates Mycobacterium tuberculosis PhoPR signaling and virulence”.

Carbon dioxide regulates Mycobacterium tuberculosis PhoPR signaling and virulence

Infection and Immunity(2025)10.1128/iai.00568-24

N/A

0.337DataRank · unranked

8 citations

Rajni Goyal, Benjamin K. Johnson, Elizabeth R. Haiderer, Robert B. Abramovitch, Shelby J. Dechow

Evaluation of whole-genome DNA methylation sequencing library preparation protocols

Epigenetics & Chromatin(2021)10.1186/s13072-021-00401-y

N/A

0DataRank · unranked

96 citations

Julie Koeman, Benjamin K. Johnson, Kelly K. Foy, Ian Beddows, Wanding Zhou +6 more

Therapeutic efficacy of antimalarial drugs targeting DosRS signaling in Mycobacterium abscessus

Science Translational Medicine(2022)10.1126/scitranslmed.abj3860

N/A

0DataRank · unranked

35 citations

Deepshikha Verma, Wěi Li, Charlotte Avanzi, Crystal J. Wiersma, John T. Williams +21 more

Carbon dioxide regulates Mycobacterium tuberculosis PhoPR signaling and virulence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.12.488064

N/A

0DataRank · unranked

4 citations

Rajni Goyal, Benjamin K. Johnson, Robert B. Abramovitch, Shelby J. Dechow

Cell State of Origin Impacts Development of Distinct Endometriosis-Related Ovarian Carcinoma Histotypes

Cancer Research(2023)10.1158/0008-5472.can-23-1362

N/A

0DataRank · unranked

28 citations

Huihui Fan, Karolin Heinze, Benjamin K. Johnson, Anna Leonova, Janine Senz +7 more

Dupsifter: a lightweight duplicate marking tool for whole genome bisulfite sequencing

Bioinformatics(2023)10.1093/bioinformatics/btad729

N/A

0DataRank · unranked

6 citations

Wanding Zhou, Benjamin K. Johnson, Hui Shen, Jacob Morrison

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies

Nucleic Acids Research(2024)10.1093/nar/gkae097

N/A

0DataRank · unranked

44 citations

Benjamin K. Johnson, Jacob Morrison, Ian Beddows, James Eapen, Efrat Katsman +8 more

ACLY and ACSS2 link nutrient-dependent chromatin accessibility to CD8 T cell effector responses

The Journal of Experimental Medicine(2024)10.1084/jem.20231820

N/A

0DataRank · unranked

39 citations

McLane J. Watson, Brandon M. Oswald, Shixin Ma, Benjamin K. Johnson, Lisa M. DeCamp +23 more

Dietary Restriction Enhances CD8⁺ T Cell Ketolysis to Limit Exhaustion and Boost Anti-Tumor Immunity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.14.621733

N/A

0DataRank · unranked

4 citations

Lisa M. DeCamp, Joseph Longo, Michael S. Dahabieh, Nicholas Bunda, Shixin Ma +15 more

Bone marrow microenvironment signatures associate with patient survival after guadecitabine and atezolizumab therapy in HMA-resistant MDS

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.08.622670

N/A

0DataRank · unranked

1 citations

Guillermo Urrutia, Andreas Due Ørskov, Hyeon Jin Kim, Seth A. Nelson, Anh Van Nguyen +20 more

High-coverage allele-resolved single-cell DNA methylation profiling by scDEEP-mC reveals cell lineage, X-inactivation state, and replication dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.01.616139

N/A

0DataRank · unranked

0 citations

Walid Abi Habib, Zhouwei Zhang, Emily Eugster, Hsiao-yun Milliron, David Sokol +11 more

High-coverage allele-resolved single-cell DNA methylation profiling reveals cell lineage, X-inactivation state, and replication dynamics

Nature Communications(2025)10.1038/s41467-025-61589-1

N/A

0DataRank · unranked

7 citations

Walid Abi Habib, Zhouwei Zhang, Emily Eugster, Hsiao-yun Milliron, David Sokol +11 more

Tranquillyzer: A Flexible Neural Network Framework for Structural Annotation and Demultiplexing of Long-Read Transcriptomes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.25.666829

N/A

0DataRank · unranked

1 citations

Jacob Morrison, Ian Beddows, Theron Palmer, Mary Rhodes, H. Josh Jang +3 more

Elizabethkingia anophelis: Physiologic and Transcriptomic Responses to Iron Stress

Frontiers in Microbiology(2020)10.3389/fmicb.2020.00804

N/A

0DataRank · unranked

31 citations

Benjamin K. Johnson, Ting Yu, Brooke N. Nelson, Edward D. Walker, Shicheng Chen

Synthbar: A Lightweight Tool for Adding Synthetic Barcodes to Sequencing Reads

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.30.657070

N/A

0DataRank · unranked

0 citations

Benjamin K. Johnson, Hui Shen, Jacob Morrison