🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Abhijit Chakraborty

La Jolla Institute for Immunology

ORCID: 0000-0002-1500-3699
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile
0.332Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs

Bioinformatics(2021)10.1093/bioinformatics/btab393
Top 52%
0.332DataRank
Top 52%4 citations

Ferhat Ay, Ramana V. Davuluri, Abhijit Chakraborty

Papers

Driven by 12 papers — median percentile 48. Top paper: “ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs”.

ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs

Bioinformatics(2021)10.1093/bioinformatics/btab393
Top 52%
0.332DataRank
Top 52%4 citations

Ferhat Ay, Ramana V. Davuluri, Abhijit Chakraborty

Sox2- Evf2 lncRNA-mediated mechanisms of chromosome topological control in developing forebrain

Development(2021)10.1242/dev.197202
N/A
0DataRank · unranked
19 citations

Abhijit Chakraborty, Madison Lynam, Kelsey R. Swyter, Monique Bastidas, Linden Collens +4 more

dcHiC detects differential compartments across multiple Hi-C datasets

Nature Communications(2022)10.1038/s41467-022-34626-6
N/A
0DataRank · unranked
80 citations

Jeffrey Wang, Ferhat Ay, Abhijit Chakraborty

The cap-proximal RNA secondary structure inhibits preinitiation complex formation on HAC1 mRNA

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101648
N/A
0DataRank · unranked
6 citations

Leena Sathe, Abhijit Chakraborty, Sankhajit Bhattacharjee, Anthony Thomas Pulvino, Madhusudan Dey +1 more

3D genome mapping identifies subgroup-specific chromosome conformations and tumor-dependency genes in ependymoma

Nature Communications(2023)10.1038/s41467-023-38044-0
N/A
0DataRank · unranked
26 citations

Aylin Camgöz, Owen Chapman, Sameena Wani, Donglim Esther Park, Jens-Martin Hübner +46 more

Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft

Scientific Reports(2023)10.1038/s41598-023-32568-7
N/A
0DataRank · unranked
10 citations

Maggie A. Marshall, Narmeen S Rashid, Jacqueline M. Grible, Aaron D. Valentine, Amy L. Olex +11 more

Chromatin structure and var2csa – a tango in regulation of var gene expression in the human malaria parasite, Plasmodium falciparum ?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.13.580059
N/A
0DataRank · unranked
0 citations

Xu Zhang, Abhijit Chakraborty, Abbas Roayaei Ardakany, Jacques Prudhomme, Ferhat Ay +3 more

Cellular heterogeneity in the developing forebrain masks transcriptional outcomes and principles of Evf2 enhancer lncRNA- Dlx5/6UCE -gene guidance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.20.581236
N/A
0DataRank · unranked
0 citations

Abhijit Chakraborty, Sara Kohtz, Ivelisse Cajigas, Fion Shiau, Robert Vassar +3 more

Author Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft

Scientific Reports(2024)10.1038/s41598-024-82374-y
N/A
0DataRank · unranked
0 citations

Maggie A. Marshall, Narmeen S Rashid, Jacqueline M. Grible, Aaron D. Valentine, Amy L. Olex +11 more

Master transcription-factor binding sites constitute the core of early replication control elements

The EMBO Journal(2025)10.1038/s44318-025-00501-5
N/A
0DataRank · unranked
5 citations

Laura Hinojosa-Gonzalez, Takayo Sasaki, Satoshi Uchino, Athanasios E Vouzas, Mariella S Soto +7 more

Oncogenic 3D genome conformations identify novel therapeutic targets in ependymoma

Research Square(2020)10.21203/rs.3.rs-88331/v1
N/A
0DataRank · unranked
0 citations

Aylin Camgöz, Donglim Esther Park, Owen Chapman, Jens-Martin Hübner, Abhijit Chakraborty +33 more

Single-cell transcriptomics of ventral forebrain progenitors identifies Evf2 enhancer lncRNA-enhancer gene guidance through direct RNA binding and RNP recruitment domains

Nature Communications(2025)10.1038/s41467-025-62205-y
N/A
0DataRank · unranked
4 citations

Abhijit Chakraborty, Sara J. Kohtz, Ivelisse Cajigas, Laura Hinojosa-Gonzalez, Fion Shiau +7 more