Jacob J. Hughey

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.261Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

PeerJ(2021)10.7717/peerj.11071

Top 59%

0.261DataRank

Top 59%3 citations

Jacob J. Hughey, Joshua Schoenbachler

Papers

Driven by 23 papers — median percentile 21. Top paper: “ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system”.

ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system

Nucleic Acids Research(2016)10.1093/nar/gkw030

N/A

4.2DataRank · unranked

114 citations

Trevor Hastie, Atul Janardhan Butte, Jacob J. Hughey

MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data

Cell Reports(2018)10.1016/j.celrep.2018.07.003

N/A

2.2DataRank · unranked

57 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +12 more

The risks of using the chi-square periodogram to estimate the period of biological rhythms

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008567

N/A

1.0DataRank · unranked

26 citations

Jacob J. Hughey, Michael C. Tackenberg

Author response: Releasing a preprint is associated with more attention and citations for the peer-reviewed article

(2019)10.7554/elife.52646.sa2

N/A

0.374DataRank · unranked

6 citations

Jacob J. Hughey, Darwin Y Fu

Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology

Journal of Biomedical Informatics(2016)10.1016/j.jbi.2016.02.005

N/A

0.345DataRank · unranked

9 citations

Natalie Telis, Jacob J. Hughey, HUA FAN-MINOGUE, Kimberly Van Auken, Michel J. Dumontier +3 more

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

PeerJ(2021)10.7717/peerj.11071

Top 59%

0.261DataRank

Top 59%3 citations

Jacob J. Hughey, Joshua Schoenbachler

Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/130948

N/A

0.241DataRank · unranked

4 citations

Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf, Hao-Chih Lee, Pier Federico Gherardini +13 more

Blood Clock Correlation Distance (BloodCCD) as a novel marker to detect circadian rhythm disruption in cancer survivors with insomnia

BJC Reports(2025)10.1038/s44276-025-00176-9

N/A

0.168DataRank · unranked

2 citations

Po‐Ju Lin, Lindsey Jean Mattick, Elliot Outland, Javier Bautista, Chin-Shang Li +15 more

A computational approach to identify interfering medications on urine drug screening assays without data from confirmatory testing

medRxiv(2020)10.1101/2020.04.03.20052621

N/A

0DataRank · unranked

0 citations

Layla Aref, Jennifer M. Colby, Jacob J. Hughey, Nadia Ayala‐Lopez

pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.07.285924

Top 100%

0DataRank

Top 100%0 citations

Jacob J. Hughey, Joshua Schoenbachler

Guidelines for Genome-Scale Analysis of Biological Rhythms

UNC Libraries(2020)10.17615/ktp3-6d25

N/A

0DataRank · unranked

0 citations

Eric Erquan Zhang, Aziz Sancar, Luciano DiTacchio, Justin Blau, Jiajia Li +88 more

The Role of Electronic Health Records in Advancing Genomic Medicine

Annual Review of Genomics and Human Genetics(2021)10.1146/annurev-genom-121120-125204

N/A

0DataRank · unranked

36 citations

Lisa Bastarache, Jacob J. Hughey, Josh F. Peterson, Jodell E. Linder

Automated quality control and cell identification of droplet-based single-cell data using dropkick

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332288

N/A

0DataRank · unranked

5 citations

Victoria M. Wang, Bob Chen, Jacob J. Hughey, Ken S. Lau, Cody N. Heiser

Automated quality control and cell identification of droplet-based single-cell data using dropkick

Genome Research(2021)10.1101/gr.271908.120

N/A

0DataRank · unranked

53 citations

Victoria M. Wang, Bob Chen, Jacob J. Hughey, Ken S. Lau, Cody N. Heiser

Optogenetic stimulation of VIPergic SCN neurons induces photoperiodic changes in the mammalian circadian clock

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.04.425287

N/A

0DataRank · unranked

0 citations

Jacob J. Hughey, Douglas G. McMahon, Michael C. Tackenberg

Cox regression is robust to inaccurate EHR-extracted event time: an application to EHR-based GWAS

Bioinformatics(2022)10.1093/bioinformatics/btac086

N/A

0DataRank · unranked

6 citations

Jacob J. Hughey, Lisa Bastarache, Joshua C. Denny, Qingxia Chen, Rebecca Irlmeier

Sex inclusion in transcriptome studies of daily rhythms

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.504312

N/A

0DataRank · unranked

1 citations

Elliot Outland, Jacob J. Hughey, Dora Obodo

LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

PLoS ONE(2023)10.1371/journal.pone.0292089

N/A

0DataRank · unranked

10 citations

Elliot Outland, Jacob J. Hughey, Dora Obodo

LimoRhyde2: genomic analysis of biological rhythms based on effect sizes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.02.526897

N/A

0DataRank · unranked

4 citations

Elliot Outland, Jacob J. Hughey, Dora Obodo

Optogenetic stimulation of VIPergic SCN neurons induces photoperiodic‐like changes in the mammalian circadian clock

European Journal of Neuroscience(2021)10.1111/ejn.15442

N/A

0DataRank · unranked

13 citations

Jacob J. Hughey, Douglas G. McMahon, Michael C. Tackenberg

Distinct components of photoperiodic light are differentially encoded by the mammalian circadian clock

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.14.906131

N/A

0DataRank · unranked

4 citations

Jacob J. Hughey, Douglas G. McMahon, Michael C. Tackenberg

The risks of using the chi-square periodogram to estimate the period of biological rhythms

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.14.251512

N/A

0DataRank · unranked

1 citations

Jacob J. Hughey, Michael C. Tackenberg

Analysis of electronic health records reveals medication-related interference on point-of-care urine drug screening assays

medRxiv(2020)10.1101/2020.04.03.20052647

N/A

0DataRank · unranked

0 citations

Jennifer M. Colby, Jacob J. Hughey, Nadia Ayala‐Lopez

Jacob J. Hughey

Indexed papers

Top data-sharing exemplar

Papers