🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ka Ming Nip

Roche (Sweden)

ORCID: 0000-0002-1574-3363
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.8Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Papers

Driven by 14 papers — median percentile 86. Top paper: “Systematic assessment of long-read RNA-seq methods for transcript identification and quantification”.

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3
Top 8%
2.8DataRank
Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

Nature Communications(2023)10.1038/s41467-023-38553-y
N/A
1.2DataRank · unranked
50 citations

Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren +2 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582
Top 20%
0.991DataRank
Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.19.469328
N/A
0DataRank · unranked
1 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

Characterization and Simulation of Metagenomic Nanopore Sequencing Data with Meta-NanoSim

Research Square(2021)10.21203/rs.3.rs-1125389/v1
N/A
0DataRank · unranked
0 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

RResolver: efficient short-read repeat resolution within ABySS

BMC Bioinformatics(2022)10.1186/s12859-022-04790-z
N/A
0DataRank · unranked
1 citations

Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip +3 more

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.07.503110
N/A
0DataRank · unranked
7 citations

Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren +2 more

GoldRush: A de novo long read genome assembler with linear time complexity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513734
N/A
0DataRank · unranked
1 citations

Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu +3 more

Linear time complexity de novo long read genome assembly with GoldRush

Nature Communications(2023)10.1038/s41467-023-38716-x
N/A
0DataRank · unranked
39 citations

Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu +3 more

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

GigaScience(2023)10.1093/gigascience/giad013
N/A
0DataRank · unranked
20 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

GigaScience(2020)10.1093/gigascience/giaa061
N/A
0DataRank · unranked
36 citations

Chen Yang, Theodora Lo, Ka Ming Nip, René L. Warren, Inanc Birol +1 more

ntEmbd: Deep learning embedding for nucleotide sequences

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.30.591806
N/A
0DataRank · unranked
2 citations

Ka Ming Nip, Inanc Birol, Saber Hafezqorani

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Genome Research(2020)10.1101/gr.260174.119
N/A
0DataRank · unranked
104 citations

Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren +2 more

RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab105
N/A
0DataRank · unranked
1 citations

Ka Ming Nip, Saber Hafezqorani, Kristina Gagalova, Chen Yang, René L. Warren +2 more