Yang Shen

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.9Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Papers

Driven by 27 papers — median percentile 89. Top paper: “Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen”.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Circulating ACE2-expressing extracellular vesicles block broad strains of SARS-CoV-2

Nature Communications(2022)10.1038/s41467-021-27893-2

N/A

4.1DataRank · unranked

170 citations

Andrew D. Hoffmann, Nurmaa K. Dashzeveg, Kathleen M. McAndrews, Paul J. Mehl, Daphne Cornish +31 more

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222

Top 9%

2.3DataRank

Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Energy‐based graph convolutional networks for scoring protein docking models

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.25888

N/A

2.1DataRank · unranked

55 citations

Yang Shen, Yue Cao

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609

Top 11%

1.9DataRank

Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Current and future directions in network biology

Bioinformatics Advances(2024)10.1093/bioadv/vbae099

N/A

1.6DataRank · unranked

100 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Extracellular Domains I and II of cell-surface glycoprotein CD44 mediate its trans-homophilic dimerization and tumor cluster aggregation

Journal of Biological Chemistry(2020)10.1074/jbc.ra119.010252

N/A

1.3DataRank · unranked

40 citations

Nurmaa K. Dashzeveg, Yue Cao, Yuzhi Jia, Xia Liu, Yang Shen +2 more

Experimental investigations on the flame spread of building’s vertical U-shape façade

Journal of Thermal Analysis and Calorimetry(2022)10.1007/s10973-021-10926-9

N/A

0.713DataRank · unranked

13 citations

Jiantao Li, Yang Shen, Kun Wang, Weigang Yan

Cross-modality and self-supervised protein embedding for compound–protein affinity and contact prediction

Bioinformatics(2022)10.1093/bioinformatics/btac470

N/A

0.693DataRank · unranked

19 citations

Yang Shen, Yuning You

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution

PLoS Genetics(2014)10.1371/journal.pgen.1004096

N/A

0.606DataRank · unranked

56 citations

Yang Shen, Alexandra P. Lewis, Yuxin Chen, Li Guo, Yixin Zhao +7 more

Network-principled deep generative models for designing drug combinations as graph sets

Bioinformatics(2020)10.1093/bioinformatics/btaa317

N/A

0.564DataRank · unranked

42 citations

Arman Hasanzadeh, Yang Shen, Mostafa Karimi

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1

Top 36%

0.540DataRank

Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Cross-Modality Protein Embedding for Compound-Protein Affinity and Contact Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.29.403162

N/A

0.279DataRank · unranked

4 citations

Yang Shen, Yuning You

The ENCODE Imputation Challenge: A critical assessment of methods for cross-cell type imputation of epigenomic profiles

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.30.502157

N/A

0.190DataRank · unranked

2 citations

Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang +40 more

CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs)

Human Genetics(2025)10.1007/s00439-024-02722-w

Top 70%

0.165DataRank

Top 70%2 citations

Alessio Del Conte, Shaowen Zhu, Wuwei Tan, Yang Shen, Yexian Zhang +24 more

Cross-Modality and Self-Supervised Protein Embedding for Compound–Protein Affinity and Contact Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500559

N/A

0.165DataRank · unranked

2 citations

Yang Shen, Yuning You

Bringing Your Own View

Proceedings of the Fifteenth ACM International Conference on Web Search and Data Mining(2022)10.1145/3488560.3498416

N/A

0DataRank · unranked

39 citations

Tianlong Chen, Zhangyang Wang, Yang Shen, Yuning You

Network-principled deep generative models for designing drug combinations as graph sets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.17.047449

N/A

0DataRank · unranked

2 citations

Arman Hasanzadeh, Yang Shen, Mostafa Karimi

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2025)10.1186/s13059-025-03494-w

N/A

0DataRank · unranked

0 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +45 more

CAGI6 ID-Challenge: Assessment of phenotype and variant predictions in 415 children with Neurodevelopmental Disorders (NDDs)

Research Square(2023)10.21203/rs.3.rs-3209168/v1

N/A

0DataRank · unranked

0 citations

Alessio Del Conte, Shaowen Zhu, Wuwei Tan, Yang Shen, Yexian Zhang +24 more

From degraded to deciphered: Applying ATAC-seq to forensic molecular diagnosis under degradation conditions

Forensic Science International(2026)10.1016/j.forsciint.2025.112789

N/A

0DataRank · unranked

0 citations

Ying Chen, Zhuo Li, Yang Chen, Xilong Lin, Manrui Li +9 more

Assessing predictions on fitness effects of missense variants in HMBS in CAGI6

Human Genetics(2024)10.1007/s00439-024-02680-3

N/A

0DataRank · unranked

2 citations

Lisa N. Kinch, Panagiotis Katsonis, Olivier Lichtarge, Milind Jagota, Yun S. Song +26 more

Novel antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.01.582176

N/A

0DataRank · unranked

1 citations

Wuwei Tan, Andrew D. Hoffmann, Yuanfei Sun, Juncheng Wei, Lamiaa El-Shennawy +16 more

Crowdsourced mapping of unexplored target space of kinase inhibitors

Nature Communications(2021)10.1038/s41467-021-23165-1

N/A

0DataRank · unranked

88 citations

Balaguru Ravikumar, Robert J. Allaway, Fang Wan, Sung‐Joon Park, Olexandr Isayev +94 more

Integrated antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy

iScience(2025)10.1016/j.isci.2025.113584

N/A

0DataRank · unranked

0 citations

Wuwei Tan, Andrew D. Hoffmann, Yuanfei Sun, Juncheng Wei, Lamiaa El-Shennawy +16 more

ICAM1 initiates CTC cluster formation and trans-endothelial migration in lung metastasis of breast cancer

Nature Communications(2021)10.1038/s41467-021-25189-z

N/A

0DataRank · unranked

269 citations

Xia Liu, Salendra Singh, Yuzhi Jia, Nurmaa K. Dashzeveg, Andrew D. Hoffmann +17 more

Yang Shen

Indexed papers

Top data-sharing exemplar

Papers