Tim Hubbard

Also affiliated with Genomics England, Elixir Medical (United States)

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

121Author DataRank

Indexed papers

18in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 18 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Papers

Driven by 35 papers — median percentile 97. Top paper: “Unknown”.

Unknown

Genome Biology(2006)10.1186/gb-2006-7-s1-s2

N/A

16.9DataRank · unranked

340 citations

Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud +13 more

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Nature(2007)10.1038/nature05874

Top 1%

12.9DataRank

Top 1%5277 citations

J Stamatoyannopoulos, Simon G. Gregory, T Gingeras, Eoghan Harrington, Zhiping Weng +286 more

Initial sequencing and comparative analysis of the mouse genome

Nature(2002)10.1038/nature01262

Top 1%

12.6DataRank

Top 1%7282 citations

Robert H. Waterston, Kerstin Lindblad‐Toh, Julien Lagarde, Josep F. Abril, PANKAJ AGARWAL +189 more

GENCODE: The reference human genome annotation for The ENCODE Project

Genome Research(2012)10.1101/gr.135350.111

Top 1%

12.0DataRank

Top 1%5084 citations

Michael G. FitzGerald, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Rizi Ai +42 more

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

Genome Research(2009)10.1101/gr.080531.108

Top 1%

12.0DataRank

Top 1%592 citations

Jennifer Harrow, Rachel A. Harte, Craig Wallin, Mark Diekhans, Bin Ma +52 more

The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression

Genome Research(2012)10.1101/gr.132159.111

Top 2%

8.5DataRank

Top 2%5242 citations

Todd A. Johnson, Giovanni Bussotti, Andrea Tanzer, Sarah Djebali, Hagen U. Tilgner +26 more

Mutational signature in colorectal cancer caused by genotoxic pks+ E. coli

Nature(2020)10.1038/s41586-020-2080-8

N/A

8.3DataRank · unranked

1184 citations

Jens Puschhof, Axel Rosendahl Huber, Arne van Hoeck, Henry M. Wood, Jason Nomburg +95 more

GENCODE reference annotation for the human and mouse genomes

Nucleic Acids Research(2018)10.1093/nar/gky955

Top 2%

8.2DataRank

Top 2%3533 citations

Mark Diekhans, Anne-Maud Ferreira, Todd A. Johnson, Irwin Jungreis, Jane E Loveland +59 more

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Genome Research(2017)10.1101/gr.213611.116

Top 2%

8.0DataRank

Top 2%1305 citations

Thibaut Hourlier, Lon Phan, Hsiu-Chuan Chen, Paul A. Kitts, Terence D. Murphy +37 more

The GENCODE pseudogene resource

Genome Biology(2012)10.1186/gb-2012-13-9-r51

Top 3%

6.9DataRank

Top 3%353 citations

Cristina Sisu, Michael G. FitzGerald, Cédric Howald, Ryan E. Mills, Xinmeng Jasmine Mu +9 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

GENCODE 2021

Nucleic Acids Research(2020)10.1093/nar/gkaa1087

Top 3%

6.9DataRank

Top 3%1480 citations

Mark Diekhans, Irwin Jungreis, Julien Lagarde, Jane E Loveland, Shinichi Morishita +59 more

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel

Nature Communications(2015)10.1038/ncomms9111

Top 3%

6.7DataRank

Top 3%386 citations

Bryan Howie, Shane McCarthy, Yasin Memari, Klaudia Walter, Josine L. Min +234 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

GENCODE: reference annotation for the human and mouse genomes in 2023

Nucleic Acids Research(2022)10.1093/nar/gkac1071

Top 4%

5.1DataRank

Top 4%663 citations

Sílvia Carbonell Sala, Mark Diekhans, Irwin Jungreis, Jane E Loveland, Jonathan M. Mudge +57 more

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/072116

Top 6%

3.8DataRank

Top 6%118 citations

Tina A. Graves-Lindsay, Thibaut Hourlier, Lon Phan, Hsiu-Chuan Chen, Paul A. Kitts +34 more

GENCODE 2025: reference gene annotation for human and mouse

Nucleic Acids Research(2024)10.1093/nar/gkae1078

Top 8%

2.7DataRank

Top 8%348 citations

Sílvia Carbonell Sala, Mark Diekhans, Jose Gonzalez Martinez, Toby Hunt, Irwin Jungreis +51 more

Landscape of transcription in human cells

Nature(2012)10.1038/nature11233

N/A

1.3DataRank · unranked

5354 citations

Qi Dai, Angelika Merkel, Timo Lassmann, Shinichi Morishita, Andrea Tanzer +91 more

Transcriptional activity and strain-specific history of mouse pseudogenes

Nature Communications(2020)10.1038/s41467-020-17157-w

Top 19%

1.1DataRank

Top 19%38 citations

Paul Muir, Adam Frankish, Ian T. Fiddes, Mark Diekhans, David Thybert +7 more

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

Nature Biotechnology(2008)10.1038/nbt1414

N/A

0.971DataRank · unranked

647 citations

Vardhman K. Rakyan, Daniel J. Turner, David B. Jaffe, Alexandra P. Lewis, Eugene Kulesha +19 more

AnnoTrack - a tracking system for genome annotation

BMC Genomics(2010)10.1186/1471-2164-11-538

N/A

0.505DataRank · unranked

14 citations

Jennifer Harrow, Tim Hubbard, Felix Kokocinski

From identification to validation to gene count

Genome Biology(2010)10.1186/gb-2010-11-s1-o1

N/A

0.276DataRank · unranked

1 citations

Clara Amid, Adam Frankish, Bronwen Aken, Iakes Ezkurdia, Felix Kokocinsk +9 more

GENCODE: Creating a Validated Manually Annotated Geneset for the Whole Human Genome

Nature Precedings(2009)10.1038/npre.2009.3155.1

Top 71%

0.128DataRank

Top 71%1 citations

Giulio Formenti, Rizi Ai, Nicholas J. Dickens, Genome Institute at Washington University, Michael Tress +45 more

Genome-Wide Analysis Reveals a Role of 3’-untranslated Region Variants Affecting Cleavage and Polyadenylation in Undiagnosed Rare Disorders

10.1101/2025.02.16.25322367

N/A

0.104DataRank · unranked

1 citations

Cristina Dias, Tim Hubbard, Y. Kainov

SOX11 variants cause a neurodevelopmental disorder with infrequent ocular malformations and hypogonadotropic hypogonadism and with distinct DNA methylation profile

Genetics in Medicine(2022)10.1016/j.gim.2022.02.013

N/A

0DataRank · unranked

36 citations

Aidin Foroutan, Jennifer Kerkhof, Haley McConkey, Michael A. Levy, Sadegheh Haghshenas +95 more

Mendelian gene identification through mouse embryo viability screening

Genome Medicine(2022)10.1186/s13073-022-01118-7

N/A

0DataRank · unranked

15 citations

Carl Henrik Westerberg, Jesse Mager, Mary E. Dickinson, Lauryl M. J. Nutter, Violeta Muñoz‐Fuentes +95 more

Identification of 4 novel human ocular coloboma genes ANK3, BMPR1B, PDGFRA, and CDH4 through evolutionary conserved vertebrate gene analysis

Genetics in Medicine(2022)10.1016/j.gim.2021.12.014

N/A

0DataRank · unranked

13 citations

Maria Toms, Rodrigo Young, Jonathan Eintracht, Hajrah Sarkar, Brian P. Brooks +70 more

Human and mouse essentiality screens as a resource for disease gene discovery

Nature Communications(2020)10.1038/s41467-020-14284-2

N/A

0DataRank · unranked

129 citations

Violeta Muñoz‐Fuentes, Stephen A. Murray, Mary E. Dickinson, Maja Bućan, Lauryl M. J. Nutter +95 more

The genomic landscape of familial glioma

Science Advances(2023)10.1126/sciadv.ade2675

N/A

0DataRank · unranked

50 citations

Georgina Armstrong, Brittney Lozzi, Prashanth Vijayaraghavan, Sharon E. Plon, Terence C. Wong +85 more

Unexpected frequency of the pathogenic AR CAG repeat expansion in the general population

Brain(2023)10.1093/brain/awad050

N/A

0DataRank · unranked

28 citations

Kristina Ibáñez, Anna‐Leigh Brown, Prasanth Sivakumar, Alessandro Bombaci, Liana Santos +94 more

Gain and loss of function variants in EZH1 disrupt neurogenesis and cause dominant and recessive neurodevelopmental disorders

Nature Communications(2023)10.1038/s41467-023-39645-5

N/A

0DataRank · unranked

23 citations

Yijing Zhou, Qian Yang, Reza Maroofian, Paula Espana-Bonilla, Chul‐Hwan Lee +95 more

The impact of a secondary, rare, non-pathogenic PKD1 variant on disease progression in autosomal dominant polycystic kidney disease

Journal of Nephrology(2025)10.1007/s40620-025-02211-x

N/A

0DataRank · unranked

0 citations

Kane E. Collins, Sophia Heneghan, Edmund Gilbert, Hana Yang, Sarah R. Senum +82 more

Normal and pathogenic variation of RFC1 repeat expansions: implications for clinical diagnosis

Brain(2023)10.1093/brain/awad240

N/A

0DataRank · unranked

72 citations

Stefania Magri, Riccardo Curró, Elena Abati, Stefano Facchini, Marinella Corbetta +95 more

An ancestral 10-bp repeat expansion in VWA1 causes recessive hereditary motor neuropathy

Brain(2020)10.1093/brain/awaa420

N/A

0DataRank · unranked

56 citations

Rauan Kaiyrzhanov, Yaqun Zou, Sahar Da’as, Reza Maroofian, Sandra Donkervoort +91 more

Peer Review #1 of "Finding melanoma drugs through a probabilistic knowledge graph (v0.1)"

(2017)10.7287/peerj-cs.106v0.1/reviews/1

N/A

0DataRank · unranked

0 citations

Michel J. Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness +572 more

Tim Hubbard

Indexed papers

Top data-sharing exemplar

Papers