🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nicola De Maio

European Bioinformatics Institute

ORCID: 0000-0002-1776-8564
Biochemistry, Genetics and Molecular BiologyEarth and Planetary Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.3Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

Papers

Driven by 16 papers — median percentile 79. Top paper: “A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees”.

A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees

Molecular Biology and Evolution(2021)10.1093/molbev/msab264
Top 6%
3.8DataRank
Top 6%121 citations

Bryan Thornlow, Angie S. Hinrichs, Alexander Krämer, Nicola De Maio, Nick Goldman +4 more

A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.03.438321
Top 21%
0.990DataRank
Top 21%18 citations

Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Nick Goldman, David Haussler +3 more

The Cumulative Indel Model: Fast and Accurate Statistical Evolutionary Alignment

Systematic Biology(2020)10.1093/sysbio/syaa050
N/A
0.744DataRank · unranked
18 citations

Nicola De Maio

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.29.591666
Top 34%
0.575DataRank
Top 34%17 citations

Angie S. Hinrichs, D.P. Anderson, Lily Karim, Bethany L. Dearlove, Jeff Knaggs +95 more

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.02.471004
N/A
0DataRank · unranked
11 citations

Alexander Krämer, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

Stability of SARS-CoV-2 phylogenies

PLoS Genetics(2020)10.1371/journal.pgen.1009175
N/A
0DataRank · unranked
133 citations

Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R. Walker +9 more

Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape

Nature(2022)10.1038/s41586-022-05189-9
N/A
0DataRank · unranked
163 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +6 more

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010056
N/A
0DataRank · unranked
35 citations

William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett‐Detig +2 more

VGsim: Scalable viral genealogy simulator for global pandemic

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010409
N/A
0DataRank · unranked
16 citations

Vadim Spirin, Dmitry Sirotkin, Evgeni Burovski, Nicola De Maio, Russell Corbett‐Detig +1 more

Maximum likelihood pandemic-scale phylogenetics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.22.485312
N/A
0DataRank · unranked
13 citations

Prabhav Kalaghatgi, Yatish Turakhia, Russell Corbett-Detig, Bui Quang Minh, Nick Goldman +1 more

Maximum likelihood pandemic-scale phylogenetics

Nature Genetics(2023)10.1038/s41588-023-01368-0
N/A
0DataRank · unranked
69 citations

Prabhav Kalaghatgi, Yatish Turakhia, Russell Corbett-Detig, Bui Quang Minh, Nick Goldman +1 more

Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations

Systematic Biology(2023)10.1093/sysbio/syad031
N/A
0DataRank · unranked
21 citations

Bryan Thornlow, Cheng Ye, Nicola De Maio, Jakob McBroome, Angie S. Hinrichs +4 more

VGsim: scalable viral genealogy simulator for global pandemic

medRxiv(2021)10.1101/2021.04.21.21255891
N/A
0DataRank · unranked
4 citations

Vadim Spirin, Dmitry Sirotkin, Evgeni Burovski, Nicola De Maio, Russell Corbett‐Detig +1 more

Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic

Nature Genetics(2021)10.1038/s41588-021-00862-7
N/A
0DataRank · unranked
472 citations

Bryan Thornlow, Angie S. Hinrichs, Nicola De Maio, Landen Gozashti, Robert Lanfear +3 more

Pandemic-Scale Phylogenomics Reveals Elevated Recombination Rates in the SARS-CoV-2 Spike Region

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.04.455157
N/A
0DataRank · unranked
49 citations

Bryan Thornlow, Angie S. Hinrichs, Jakob McBroome, Nicolás Ayala, Cheng Ye +5 more

phastSim: efficient simulation of sequence evolution for pandemic-scale datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435416
N/A
0DataRank · unranked
11 citations

William Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett‐Detig +2 more