🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nicholas A. Bokulich

ETH Zurich

ORCID: 0000-0002-1784-8935

Also affiliated with Department of Medical Sciences

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
2.6Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

RESCRIPt: Reproducible sequence taxonomy reference database management

PLOS Computational Biology(2021)10.1371/journal.pcbi.1009581
Top 2%
9.1DataRank
Top 2%975 citations

Devon R. O’Rourke, Benjamin D. Kaehler, Michał Ziemski, Matthew R. Dillon, Jeffrey T. Foster +2 more

Papers

Driven by 17 papers — median percentile 79. Top paper: “RESCRIPt: Reproducible sequence taxonomy reference database management”.

RESCRIPt: Reproducible sequence taxonomy reference database management

PLOS Computational Biology(2021)10.1371/journal.pcbi.1009581
Top 2%
9.1DataRank
Top 2%975 citations

Devon R. O’Rourke, Benjamin D. Kaehler, Michał Ziemski, Matthew R. Dillon, Jeffrey T. Foster +2 more

Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey

The Lancet Microbe(2022)10.1016/s2666-5247(22)00333-0
Top 14%
1.5DataRank
Top 14%34 citations

Anil K. Chaturvedi, Martin J. Blaser, Nicholas A. Bokulich, J. Gregory Caporaso, Maura L. Gillison +9 more

Oral Microbiome Profile of the US Population

JAMA Network Open(2025)10.1001/jamanetworkopen.2025.8283
Top 28%
0.702DataRank
Top 28%31 citations

Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J. Blaser, Nicholas A. Bokulich +14 more

The mouth of America: the oral microbiome profile of the US population

medRxiv(2024)10.1101/2024.12.03.24318415
Top 51%
0.340DataRank
Top 51%5 citations

Emily Vogtmann, Jianxin Shi, Yukiko Yano, Martin J. Blaser, Nicholas A. Bokulich +14 more

Integration of multi-omics data improves prediction of cervicovaginal microenvironment in cervical cancer

medRxiv(2020)10.1101/2020.08.27.20183426
N/A
0DataRank · unranked
4 citations

Paweł Łaniewski, Dana M. Chase, J. Gregory Caporaso, Melissa M. Herbst‐Kralovetz, Nicholas A. Bokulich

Soluble corn fiber reduces ovalbumin-induced sinonasal inflammation via the gut microbiota-airway axis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.23.216754
N/A
0DataRank · unranked
1 citations

Emily M. Borsom, Gabrielle M Orsini, Oliver Kask, Keehoon Lee, Allyson H. Hirsch +8 more

Cigarette Smoking and Opium Use in Relation to the Oral Microbiota in Iran

Microbiology Spectrum(2021)10.1128/spectrum.00138-21
N/A
0DataRank · unranked
23 citations

Yongli Han, J. Gregory Caporaso, Nicholas A. Bokulich, Ashraf Mohamadkhani, Alireza Moayyedkazemi +15 more

Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009056
N/A
0DataRank · unranked
6 citations

Evan Bolyen, A. K. Adamov, Aeriel D. Belk, Emily M. Borsom, Zachary M. Burcham +26 more

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

F1000Research(2020)10.12688/f1000research.24751.2
N/A
0DataRank · unranked
16 citations

Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp +14 more

Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009876
N/A
0DataRank · unranked
73 citations

Paweł Łaniewski, A. K. Adamov, Dana M. Chase, J. Gregory Caporaso, Melissa M. Herbst‐Kralovetz +1 more

Partial convergence of the human vaginal and rectal maternal microbiota in late gestation and early post-partum

npj Biofilms and Microbiomes(2023)10.1038/s41522-023-00404-5
N/A
0DataRank · unranked
12 citations

Keith A. Martinez, Nora Henderson, Melanie Jay, William Schweizer, Debby Bogaert +5 more

The oral microbiome and all-cause mortality in the US population

medRxiv(2024)10.1101/2024.12.03.24318413
N/A
0DataRank · unranked
3 citations

Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean +14 more

The Oral Microbiome and All-Cause Mortality in a US Population-Representative Prospective Cohort

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf321
N/A
0DataRank · unranked
2 citations

Yukiko Yano, Jianxin Shi, Yunhu Wan, Vaishnavi Purandare, Jody McLean +14 more

Longitudinal assessment of nonavalent vaccine HPV types in a sample of sexually active African American women from ten U.S. Cities

Vaccine(2021)10.1016/j.vaccine.2021.07.026
N/A
0DataRank · unranked
0 citations

Karl Krupp, Makella Coudray, Brett Colbert, Daniel Ruiz-Perez, Hong Cui +7 more

Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

F1000Research(2020)10.12688/f1000research.24751.1
N/A
0DataRank · unranked
16 citations

Matthew R. Dillon, Nicholas A. Bokulich, Jason T. Ladner, Brendan B. Larsen, Crystal M. Hepp +13 more

An Early Pandemic Analysis of SARS-CoV-2 Population Structure and Dynamics in Arizona

mBio(2020)10.1128/mbio.02107-20
N/A
0DataRank · unranked
33 citations

Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts +18 more

Defining the Pandemic at the State Level: Sequence-Based Epidemiology of the SARS-CoV-2 virus by the Arizona COVID-19 Genomics Union (ACGU)

medRxiv(2020)10.1101/2020.05.08.20095935
N/A
0DataRank · unranked
6 citations

Brendan B. Larsen, Jolene R. Bowers, Crystal M. Hepp, Evan Bolyen, Megan Folkerts +18 more