Gary D. Wu

Pharmacology, Toxicology and PharmaceuticsBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.8Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Challenges in IBD Research: Environmental Triggers

Inflammatory Bowel Diseases(2019)10.1093/ibd/izz076

Top 8%

2.8DataRank

Top 8%93 citations

James D. Lewis, Emeran A. Mayer, Charles N. Bernstein, Scott E. Plevy, Emil Chuang +19 more

Papers

Driven by 40 papers — median percentile 92. Top paper: “Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome”.

Randomized Controlled-Feeding Study of Dietary Emulsifier Carboxymethylcellulose Reveals Detrimental Impacts on the Gut Microbiota and Metabolome

Gastroenterology(2021)10.1053/j.gastro.2021.11.006

N/A

4.1DataRank · unranked

317 citations

Charlene Compher, Brittaney Bonhomme, Qing Liu, Yuan Tian, William A. Walters +16 more

Challenges in IBD Research: Environmental Triggers

Inflammatory Bowel Diseases(2019)10.1093/ibd/izz076

Top 8%

2.8DataRank

Top 8%93 citations

James D. Lewis, Emeran A. Mayer, Charles N. Bernstein, Scott E. Plevy, Emil Chuang +19 more

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

Science(2011)10.1126/science.1208344

N/A

1.3DataRank · unranked

6514 citations

Jun Chen, Christian Hoffmann, Kyle Bittinger, Ying-Yu Chen, Sue A. Keilbaugh +14 more

Colonization and Dissemination of Klebsiella pneumoniae is Dependent on Dietary Carbohydrates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.25.542283

N/A

0.378DataRank · unranked

5 citations

Lisa C. Harling, Elliot S. Friedman, Ceylan Tanes, Junhee Lee, Jenni Firrman +6 more

Changes in fecal lipidome after treatment with ivacaftor without changes in microbiome or bile acids

Journal of Cystic Fibrosis(2023)10.1016/j.jcf.2023.09.010

N/A

0.360DataRank · unranked

7 citations

Ceylan Tanes, Kyle Bittinger, Yun Li, Hongzhe Lee, Elliot S. Friedman +6 more

Metal availability shapes early life microbial ecology and community succession

mBio(2024)10.1128/mbio.01534-24

N/A

0.354DataRank · unranked

7 citations

Elliot S. Friedman, Orlaith Keenan, Nile U. Bayard, Eileen Ford, Ceylan Tanes +8 more

Increased reflux secondary bile acids are associated with changes to the microbiome and transcriptome in Barrett’s esophagus

Gut Microbes(2025)10.1080/19490976.2025.2545420

N/A

0.346DataRank · unranked

8 citations

Yun Li, Gary W. Falk, Gregory G. Ginsberg, Kenneth K. Wang, Prasad G. Iyer +13 more

InSty: A ProDy Module for Evaluating Protein Interactions and Stability

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169009

N/A

0.269DataRank · unranked

5 citations

James Krieger, Anupam Banerjee, Xin Cao, Gary D. Wu, Anthony T. Bogetti +5 more

The Impact of Introducing Patient-Reported Inflammatory Bowel Disease Symptoms via Electronic Survey on Clinic Visit Length, Patient and Provider Satisfaction, and the Environment Microbiome

Inflammatory Bowel Diseases(2021)10.1093/ibd/izaa356

N/A

0.165DataRank · unranked

2 citations

Ali Harb, Scott G. Daniel, Ghadeer K. Dawwas, Erin M. Schnellinger, Colin Wollack +21 more

Quantifying Intestinal Capillary Oxygenation Using Two‐photon Phosphorescence Lifetime Microscopy

The FASEB Journal(2021)10.1096/fasebj.2021.35.s1.00253

N/A

0DataRank · unranked

1 citations

Wenjing Zong, Mohammed Alfadhel, Buyin Fu, Mohammed Yaseen, Gary D. Wu +3 more

SARS-CoV-2-specific T cells in unexposed adults display broad trafficking potential and cross-react with commensal antigens

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.29.470421

N/A

0DataRank · unranked

14 citations

Sumbul Afroz, Yi‐Gen Pan, Ruozhang Xu, Lea Williams, Chin-Fang Lin +5 more

Stable Isotope Tracing In Vivo Reveals A Metabolic Bridge Linking The Microbiota To Host Histone Acetylation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.05.450926

N/A

0DataRank · unranked

9 citations

Leah Gates, Marylène Leboeuf, Sarah A. Smith, Lillian Chau, Elliot S. Friedman +8 more

Stable isotope tracing in vivo reveals a metabolic bridge linking the microbiota to host histone acetylation

Cell Reports(2022)10.1016/j.celrep.2022.111809

N/A

0DataRank · unranked

57 citations

Leah Gates, Marylène Leboeuf, Sarah A. Smith, Lillian Chau, Mariana Lopes +9 more

Dietary fiber-based regulation of bile salt hydrolase activity in the gut microbiota and its relevance to human disease

Gut Microbes(2022)10.1080/19490976.2022.2083417

N/A

0DataRank · unranked

40 citations

Wenjing Zong, Victoria M. Gershuni, Elliot S. Friedman, Ceylan Tanes, Adoma Boateng +8 more

The Macronutrient Composition of Infant Formula Produces Differences in Gut Microbiota Maturation That Associate with Weight Gain Velocity and Weight Status

Nutrients(2022)10.3390/nu14061241

N/A

0DataRank · unranked

17 citations

Yun Li, Kyle Bittinger, Elliot S. Friedman, Chunyu Zhao, Hongzhe Li +3 more

Modulation of the gut microbiota engages antigen cross-presentation to enhance antitumor effects of CAR T cell immunotherapy

Molecular Therapy(2023)10.1016/j.ymthe.2023.01.012

N/A

0DataRank · unranked

59 citations

Silvia Beghi, Marco Ruella, Kalpana Parvathaneni, Silvano Salaris, Νεκτάριος Κωστόπουλος +23 more

Human Intestinal Microbiome Determines Individualized Inflammatory Response to Dietary Emulsifier Carboxymethylcellulose Consumption

Cellular and Molecular Gastroenterology and Hepatology(2023)10.1016/j.jcmgh.2023.11.001

N/A

0DataRank · unranked

15 citations

Gary D. Wu, William A. Walters, Charlene Compher, Josephine Ni, Clara Delaroque +7 more

Penn Healthy Diet survey: pilot validation and scoring

British Journal Of Nutrition(2023)10.1017/s0007114523001642

N/A

0DataRank · unranked

4 citations

R. P. Quinn, Richard P. Haslam, Elizabeth E. Bader, JoEllen Weaver, Scott Dudek +4 more

African American mothers' perceptions of infant body size are prospectively associated with infant growth and BMI

American Journal of Human Biology(2023)10.1002/ajhb.23890

N/A

0DataRank · unranked

0 citations

Meghan K. Shirley, Elizabeth Prout Parks, Gary D. Wu, Andrea Kelly, Eileen Ford +2 more

Bile salt hydrolase catalyses formation of amine-conjugated bile acids

Nature(2024)10.1038/s41586-023-06990-w

N/A

0DataRank · unranked

208 citations

Stephanie L. Collins, Ceylan Tanes, Edson R. Rocha, Megan Granda, Sumeet Solanki +25 more

Dietary carbohydrates regulate intestinal colonization and dissemination of Klebsiella pneumoniae

Journal of Clinical Investigation(2024)10.1172/jci174726

N/A

0DataRank · unranked

46 citations

Lisa C. Harling, Elliot S. Friedman, Ceylan Tanes, Junhee Lee, Jenni Firrman +8 more

The intestinal microbiome of inflammatory bowel disease across the pediatric age range

Gut Microbes(2024)10.1080/19490976.2024.2317932

N/A

0DataRank · unranked

21 citations

Kyle Bittinger, Yue Ren, Kelly Kachelries, J.M. Guerra Vales, Hongzhe Li +6 more

Neutrophil-mediated hypoxia drives pathogenic CD8+ T cell responses in cutaneous leishmaniasis

Journal of Clinical Investigation(2024)10.1172/jci177992

N/A

0DataRank · unranked

20 citations

Camila Farias Amorim, Klauss Mostacada, Allison Yan, Laís Amorim Sacramento, Rae A. Stanco +8 more

Surgery for Crohn’s Disease Is Associated With a Dysbiotic Microbiome and Metabolome: Results From Two Prospective Cohorts

Cellular and Molecular Gastroenterology and Hepatology(2024)10.1016/j.jcmgh.2024.05.005

N/A

0DataRank · unranked

15 citations

Scott G. Daniel, Hongzhe Li, Fuhua Hao, Andrew D. Patterson, Aaron L. Hecht +65 more

CT imaging-derived phenotypes for abdominal muscle and their association with age and sex in a medical biobank

Scientific Reports(2024)10.1038/s41598-024-64603-6

N/A

0DataRank · unranked

11 citations

Chantal Chahine, Neil Chatterjee, Matthew T. MacLean, Sophia Swago, Abhi Bhattaru +44 more

Amino acid competition shapes Acinetobacter baumannii gut carriage

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.19.619093

N/A

0DataRank · unranked

3 citations

R. C. Clark, Dziedzom A. Bansah, Elizabeth N. Varner, Connor R. Tiffany, Kanchan Jaswal +11 more

Amino acid competition shapes Acinetobacter baumannii gut carriage

Cell Host & Microbe(2025)10.1016/j.chom.2025.07.003

N/A

0DataRank · unranked

12 citations

R. C. Clark, Dziedzom A. Bansah, Elizabeth N. Varner, Connor R. Tiffany, Kanchan Jaswal +12 more

Dietary Fiber Modulates the Window of Susceptibility to Clostridioides difficile Infection

Gastroenterology(2025)10.1053/j.gastro.2025.04.027

N/A

0DataRank · unranked

8 citations

Amanda PeBenito, Aaron L. Hecht, Connor R. Tiffany, Ceylan Tanes, Rochelle C. Glover +9 more

The Physiology of the WEight-Reduced State (POWERS) study: environmental, psychological, and social determinants of health

International Journal of Obesity(2025)10.1038/s41366-025-01911-5

N/A

0DataRank · unranked

2 citations

Giada Benasi, John M. Jakicic, Wendy C. King, Susan Z. Yanovski, Stephanie Kelley +75 more

The Physiology Of the WEight Reduced State (POWERS) study: assessing energy balance

International Journal of Obesity(2025)10.1038/s41366-025-01935-x

N/A

0DataRank · unranked

1 citations

Kelly C. Allison, Maren R. Laughlin, Kathryn Whyte, John M. Jakicic, Laurel Mayer +76 more

Early infant appetitive traits are associated with growth status and adiposity in African-American infants and toddlers

Annals of Human Biology(2025)10.1080/03014460.2025.2557266

N/A

0DataRank · unranked

1 citations

Gary D. Wu, Eileen Ford, Ceylan Tanes, Patricia A. DeRusso, Andrea Kelly +1 more

Sex-based differences in imaging-derived body composition and their association with clinical malnutrition in abdominal surgery patients

medRxiv(2025)10.1101/2025.04.05.25325276

N/A

0DataRank · unranked

0 citations

Shubha Vasisht, Valerie L. Luks, G Vargas, Charlene Compher, Paul M. Titchenell +6 more

Concomitant COX-1 and COX-2 suppression is not sufficient to induce enteropathy associated with chronic NSAID use

Journal of Clinical Investigation(2026)10.1172/jci190575

N/A

0DataRank · unranked

0 citations

Gregory L. Szeto, Christin Herrmann, Karl Keat, Charles-Antoine Assenmacher, Ceylan Tanes +17 more

Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry

Gastroenterology(2020)10.1053/j.gastro.2020.09.038

N/A

0DataRank · unranked

209 citations

Eugene F. Yen, Ari Grinspan, Stacy A. Kahn, Ashish Atreja, James D. Lewis +28 more

Mitochondrial dysfunction in inflammatory bowel disease alters intestinal epithelial metabolism of hepatic acylcarnitines

Journal of Clinical Investigation(2020)10.1172/jci133371

N/A

0DataRank · unranked

97 citations

Sayaka Ogawa, Lillian Chau, Kelly A. Whelan, Kathryn E. Hamilton, Jie Chen +18 more

Long-term Outcomes Following Multiply Recurrent Clostridioides difficile Infection and Fecal Microbiota Transplantation

Clinical Gastroenterology and Hepatology(2020)10.1016/j.cgh.2020.12.004

N/A

0DataRank · unranked

23 citations

Colleen Brensinger, Ravy K. Vajravelu, Qufei Wu, Colleen Kelly, Loren Laine +3 more

Monitoring Fecal Microbiota Transplantation Practice in a Rapidly Evolving Health and Regulatory Environment

Gastroenterology(2020)10.1053/j.gastro.2020.08.039

N/A

0DataRank · unranked

9 citations

Loren Laine, Gary D. Wu, Colleen Kelly

Maternal gut microbiota reflecting poor diet quality is associated with spontaneous preterm birth in a prospective cohort study

American Journal of Clinical Nutrition(2020)10.1093/ajcn/nqaa361

N/A

0DataRank · unranked

42 citations

Yun Li, Michal A. Elovitz, Hongzhe Li, Gary D. Wu, Charlene Compher +1 more

Role of dietary fiber in the recovery of the human gut microbiome and its metabolome

Cell Host & Microbe(2021)10.1016/j.chom.2020.12.012

N/A

0DataRank · unranked

313 citations

Kyle Bittinger, Yuan Gao, Elliot S. Friedman, Lisa Nessel, Unmesha Roy Paladhi +11 more

Decreased Intestinal Microbiome Diversity in Pediatric Sepsis: A Conceptual Framework for Intestinal Dysbiosis to Influence Immunometabolic Function

Critical Care Explorations(2021)10.1097/cce.0000000000000360

N/A

0DataRank · unranked

13 citations

Kyle Bittinger, Jung‐Jin Lee, Elliot S. Friedman, Lisa M. Mattei, Kathryn Graham +10 more

Gary D. Wu

Indexed papers

Top data-sharing exemplar

Papers