Charles G. Danko

ORCID: 0000-0002-1999-7125

Also affiliated with Département Santé Animale

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.3Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Darwinian genomics and diversity in the tree of life

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115644119

Top 16%

1.3DataRank

Top 16%53 citations

Shawn M. Burgess, Hans Cheng, Charles G. Danko, Clare A. Gill, Erich D. Jarvis +12 more

Papers

Driven by 31 papers — median percentile 84. Top paper: “Darwinian genomics and diversity in the tree of life”.

Darwinian genomics and diversity in the tree of life

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115644119

Top 16%

1.3DataRank

Top 16%53 citations

Shawn M. Burgess, Hans Cheng, Charles G. Danko, Clare A. Gill, Erich D. Jarvis +12 more

Complete Khoisan and Bantu genomes from southern Africa

Nature(2010)10.1038/nature08795

N/A

0.932DataRank · unranked

500 citations

Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine, Lindsay R. Kasson +44 more

SETD2 Haploinsufficiency Enhances Germinal Center–Associated AICDA Somatic Hypermutation to Drive B-cell Lymphomagenesis

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1514

N/A

0.896DataRank · unranked

30 citations

Matt Teater, Ceyda Durmaz, Cem Meydan, Alexandra G. Chivu, Amy Chadburn +14 more

RNA polymerase II and PARP1 shape enhancer-promoter contacts

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.07.499190

N/A

0.694DataRank · unranked

9 citations

James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J. Rice +4 more

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

Genes & Development(2022)10.1101/gad.349565.122

N/A

0.489DataRank · unranked

25 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

E-Protein Inhibition in ILC2 Development Shapes the Function of Mature ILC2s during Allergic Airway Inflammation

The Journal of Immunology(2022)10.4049/jimmunol.2100414

N/A

0.292DataRank · unranked

6 citations

Lauren M. Webb, Hung-An Ting, Oyebola O. Oyesola, Oluomachi G. Onyekwere, James J. Lewis +7 more

RTFBSDB: an integrated framework for transcription factor binding site analysis

bioRxiv (Cold Spring Harbor Laboratory)10.1101/036053

N/A

0.203DataRank · unranked

2 citations

Andre L. Martins, Charles G. Danko, Zhong Wang

Interdependence between histone marks and steps in Pol II transcription

Research Square(2021)10.21203/rs.3.rs-149042/v1

N/A

0.165DataRank · unranked

2 citations

Alexandra G. Chivu, Lauren A. Choate, Edward Rice, Donald C. Miller, Tinyi Chu +9 more

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

BMC Biology(2021)10.1186/s12915-021-00949-x

N/A

0DataRank · unranked

65 citations

Yixin Zhao, Yi-Fei Huang, Noah Dukler, Edward J. Rice, Alexandra G. Chivu +4 more

GLP-1 receptor signaling increases PCSK1 and β cell features in human α cells

JCI Insight(2021)10.1172/jci.insight.141851

N/A

0DataRank · unranked

56 citations

Marlena M. Holter, Leanne R. Donahue, Isaac S. Lee, Qiaonan C. Zheng, Journey L. Wise +9 more

Multiple stages of evolutionary change in anthrax toxin receptor expression in humans

Nature Communications(2021)10.1038/s41467-021-26854-z

N/A

0DataRank · unranked

13 citations

Gilad Barshad, Pierce W. McMahon, Iskander Said, Edward J. Rice, Paul R. Munn +3 more

Deconvolution of expression for nascent RNA-sequencing data (DENR) highlights pre-RNA isoform diversity in human cells

Bioinformatics(2021)10.1093/bioinformatics/btab582

N/A

0DataRank · unranked

9 citations

Noah Dukler, Gilad Barshad, Shushan Toneyan, Charles G. Danko, Adam Siepel +1 more

Genetic Dissection of the RNA Polymerase II Transcription Cycle

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.23.445279

N/A

0DataRank · unranked

6 citations

Adriana K. Alexander, Edward J. Rice, Lauren A. Choate, Paula E. Cohen, Charles G. Danko +1 more

Deconvolution of Expression for Nascent RNA Sequencing Data (DENR) Highlights Pre-RNA Isoform Diversity in Human Cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.16.435537

N/A

0DataRank · unranked

4 citations

Noah Dukler, Gilad Barshad, Shushan Toneyan, Charles G. Danko, Adam Siepel +1 more

Cell type and gene expression deconvolution with BayesPrism enables Bayesian integrative analysis across bulk and single-cell RNA sequencing in oncology

Nature Cancer(2022)10.1038/s43018-022-00356-3

N/A

0DataRank · unranked

635 citations

Zhong Wang, Dana Pe’er, Charles G. Danko, Tinyi Chu

Interdependence between histone marks and steps in Pol II transcription

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.08.032730

N/A

0DataRank · unranked

7 citations

Alexandra G. Chivu, Lauren A. Choate, Edward J. Rice, Donald C. Miller, Tinyi Chu +9 more

Bayesian cell-type deconvolution and gene expression inference reveals tumor-microenvironment interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.07.897900

N/A

0DataRank · unranked

11 citations

Zhong Wang, Dana Pe’er, Charles G. Danko, Tinyi Chu

A rapid, sensitive, scalable method for Precision Run-On sequencing (PRO-seq)

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.18.102277

N/A

0DataRank · unranked

76 citations

Luke Wojenski, Lauren M. Wainman, Nathaniel D. Tippens, Edward J. Rice, Alexis Dziubek +11 more

Hotspots of Aberrant Enhancer Activity in Fibrolamellar Carcinoma Reveal Candidate Oncogenic Pathways and Therapeutic Vulnerabilities

Cell Reports(2020)10.1016/j.celrep.2020.03.073

N/A

0DataRank · unranked

43 citations

Ramja Sritharan, F. Donelson Smith, Adam B. Francisco, K. Rosanna, Rodica P. Bunaciu +6 more

Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone

Science Advances(2020)10.1126/sciadv.abb8617

N/A

0DataRank · unranked

22 citations

Steven Van Belleghem, Riccardo Papa, Charles G. Danko, Robert D. Reed, James J. Lewis

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489065

N/A

0DataRank · unranked

5 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

Meiotic gene transcription programs are mediated by A-MYB and BRDT-dependent RNA polymerase II pause release during mammalian prophase I

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.19.504615

N/A

0DataRank · unranked

4 citations

Edward J. Rice, Gilad Barshad, Lina Zhu, Paula E. Cohen, Charles G. Danko +1 more

Run-on sequencing reveals nascent transcriptomics of the human microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.22.489220

N/A

0DataRank · unranked

1 citations

Edward J. Rice, Iwijn De Vlaminck, Charles G. Danko, Ilana Brito, Albert C. Vill

RNA polymerase II and PARP1 shape enhancer-promoter contacts

Research Square(2022)10.21203/rs.3.rs-1851612/v1

N/A

0DataRank · unranked

0 citations

Gilad Barshad, James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein +4 more

RNA polymerase II dynamics shape enhancer–promoter interactions

Nature Genetics(2023)10.1038/s41588-023-01442-7

N/A

0DataRank · unranked

115 citations

James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J. Rice +6 more

A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis

Nature Communications(2023)10.1038/s41467-023-37408-w

N/A

0DataRank · unranked

44 citations

Edward J. Rice, Jelena Lujić, L. Simón, Stephanie Tanis, Gilad Barshad +5 more

Evolution of promoter-proximal pausing enabled a new layer of transcription control

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.19.529146

N/A

0DataRank · unranked

10 citations

Brent A. Basso, Abderhman Abuhashem, Michelle M. Leger, Gilad Barshad, Edward J. Rice +15 more

Evolution of promoter-proximal pausing enabled a new layer of transcription control

Research Square(2023)10.21203/rs.3.rs-2679520/v1

N/A

0DataRank · unranked

5 citations

Alexandra G. Chivu, Abderhman Abuhashem, Gilad Barshad, Edward Rice, Michelle M. Leger +12 more

Functional and Computational Interrogation of the Juvenile Idiopathic Arthritis Risk Loci Identifies Candidate Causal SNPs and Target Genes in CD4+ T cells

medRxiv(2025)10.64898/2025.12.15.25342296

N/A

0DataRank · unranked

0 citations

Emma K. Haley, Gilad Barshad, Adam He, Anita Rogic, Edward J. Rice +5 more

Multiple stages of evolutionary change in anthrax toxin receptor expression in humans

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.29.227660

N/A

0DataRank · unranked

1 citations

Gilad Barshad, Pierce W. McMahon, Iskander Said, Edward J. Rice, Paul R. Munn +3 more

Elevated circulating Th2 but not group 2 innate lymphoid cell responses characterize canine atopic dermatitis

Veterinary Immunology and Immunopathology(2020)10.1016/j.vetimm.2020.110015

N/A

0DataRank · unranked

20 citations

Mridusmita Saikia, Jeremy Eule, Christina A. Mazulis, Julia E. Miller, Joby M. Cowulich +8 more

Charles G. Danko

Indexed papers

Top data-sharing exemplar

Papers