Alexander Tong

ORCID: 0000-0002-2031-4096

Also affiliated with Sanford Consortium for Regenerative Medicine

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Defining and benchmarking open problems in single-cell analysis”.

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1

N/A

0.603DataRank · unranked

17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

Uncovering the Folding Landscape of RNA Secondary Structure with Deep\n Graph Embeddings

arXiv (Cornell University)(2020)10.48550/arxiv.2006.06885

N/A

0DataRank · unranked

2 citations

Andrew Benz, Alexander Tong, Guy Wolf, Smita Krishnaswamy, Egbert Castro

Multimodal Data Visualization and Denoising with Integrated Diffusion

PubMed(2021)10.1109/mlsp52302.2021.9596214

N/A

0DataRank · unranked

20 citations

Abhinav Godavarthi, Alexander Tong, Guy Wolf, Smita Krishnaswamy, Manik Kuchroo

Data-Driven Learning of Geometric Scattering Modules for GNNs

PubMed(2021)10.1109/mlsp52302.2021.9596169

N/A

0DataRank · unranked

5 citations

Frederick Wenkel, Kincaid Macdonald, Smita Krishnaswamy, Guy Wolf, Alexander Tong

MURAL: An Unsupervised Random Forest-Based Embedding for Electronic Health Record Data

2021 IEEE International Conference on Big Data (Big Data)(2021)10.1109/bigdata52589.2021.9672045

N/A

0DataRank · unranked

0 citations

Dennis Shung, Alexander Tong, Adrian J. Stanley, Michael Schultz, Jeffrey Ngu +4 more

Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes

JCI Insight(2022)10.1172/jci.insight.156330

N/A

0DataRank · unranked

51 citations

Songyan Deng, Katherine Du, Manik Kuchroo, Daniel B. Burkhardt, Alexander Tong +15 more

Resistance of MMTV-NeuT/ATTAC mice to anti-PD-1 immune checkpoint therapy is associated with macrophage infiltration and Wnt pathway expression

Oncotarget(2022)10.18632/oncotarget.28330

N/A

0DataRank · unranked

3 citations

Lü Jin, Handan Xiang, Anannya Bhattacharya, Philip E. Brandish, Gretchen A. Baltus +4 more

Geodesic Sinkhorn for Fast and Accurate Optimal Transport on Manifolds

arXiv (Cornell University)(2022)10.48550/arxiv.2211.00805

N/A

0DataRank · unranked

1 citations

Alexander Tong, María Ramos Zapatero, Tape, Christopher J., Guy Wolf, Smita Krishnaswamy +1 more

Trellis tree-based analysis reveals stromal regulation of patient-derived organoid drug responses

Cell(2023)10.1016/j.cell.2023.11.005

N/A

0DataRank · unranked

65 citations

Alexander Tong, James W. Opzoomer, Rhianna O’Sullivan, Ferran Cardoso Rodriguez, Jahangir Sufi +8 more

Understanding Graph Neural Networks with Generalized Geometric Scattering Transforms

SIAM Journal on Mathematics of Data Science(2023)10.1137/21m1465056

N/A

0DataRank · unranked

6 citations

Alexander Tong, Feng Gao, Guy Wolf, Matthew Hirn, Michael Perlmutter

Time-Inhomogeneous Diffusion Geometry and Topology

SIAM Journal on Mathematics of Data Science(2023)10.1137/21m1462945

N/A

0DataRank · unranked

3 citations

Alexander Tong, Bastian Rieck, Jessie Huang, Manik Kuchroo, Matthew Hirn +3 more

Improving and generalizing flow-based generative models with minibatch optimal transport

arXiv (Cornell University)(2023)10.48550/arxiv.2302.00482

N/A

0DataRank · unranked

31 citations

Kilian Fatras, Nikolay Malkin, Guillaume Huguet, Yanlei Zhang, Jarrid Rector-Brooks +3 more

Simulation-free Schrödinger bridges via score and flow matching

arXiv (Cornell University)(2023)10.48550/arxiv.2307.03672

N/A

0DataRank · unranked

6 citations

Nikolay Malkin, Kilian Fatras, Lazar Atanackovic, Yan‐Lei Zhang, Guillaume Huguet +3 more

Geodesic Sinkhorn For Fast and Accurate Optimal Transport on Manifolds

PubMed(2023)10.1109/mlsp55844.2023.10285995

N/A

0DataRank · unranked

4 citations

Alexander Tong, María Ramos Zapatero, Christopher J. Tape, Guy Wolf, Smita Krishnaswamy +1 more

Learnable Filters for Geometric Scattering Modules

IEEE Transactions on Signal Processing(2024)10.1109/tsp.2024.3378001

N/A

0DataRank · unranked

6 citations

Frederik Wenkel, Dhananjay Bhaskar, Kincaid Macdonald, Jackson Grady, Michael Perlmutter +3 more

ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

arXiv (Cornell University)(2024)10.48550/arxiv.2406.14794

N/A

0DataRank · unranked

1 citations

Ke Xu, Liangbo L. Shen, Guillaume Huguet, Zilong Wang, Alexander Tong +6 more

Trajectory Flow Matching with Applications to Clinical Time Series Modeling

arXiv (Cornell University)(2024)10.48550/arxiv.2410.21154

N/A

0DataRank · unranked

0 citations

Pu Yuan, Yuki I. Kawamura, Andrew Loza, Yoshua Bengio, Dennis Shung +2 more

How to go with the flow: flow matching in bioinformatics and computational biology

(2025)10.22541/au.175382408.89466370/v3

N/A

0DataRank · unranked

2 citations

Lazar Atanackovic, Akshata Hegde, Yanli Wang, Frimpong Boadu, Joel Selvaraj +4 more

Interpretable Neuron Structuring with Graph Spectral Regularization

Lecture notes in computer science(2020)10.1007/978-3-030-44584-3_40

N/A

0DataRank · unranked

3 citations

David van Dijk, Jay S. Stanley, Matthew Amodio, Kristina Yim, Rebecca Muhle +4 more

Flow matching for generative modeling in bioinformatics and computational biology

(2025)10.22541/au.175382408.89466370/v4

N/A

0DataRank · unranked

0 citations

Lazar Atanackovic, Akshata Hegde, Yanli Wang, Frimpong Boadu, Joel Selvaraj +4 more