Yuankai Huo

ORCID: 0000-0002-2096-8065

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.0Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Sex and APOE ε4 allele differences in longitudinal white matter microstructure in multiple cohorts of aging and Alzheimer's disease

Alzheimer s & Dementia(2024)10.1002/alz.14343

Top 42%

0.452DataRank

Top 42%14 citations

Aditi Sathe, Dimitrios Zaras, Yisu Yang, Alaina Durant, Kacie Deters +43 more

Papers

Driven by 137 papers — median percentile 22. Top paper: “AI Body Composition in Lung Cancer Screening: Added Value Beyond Lung Cancer Detection”.

AI Body Composition in Lung Cancer Screening: Added Value Beyond Lung Cancer Detection

Radiology(2023)10.1148/radiol.222937

N/A

2.4DataRank · unranked

67 citations

Mirza S. Khan, Thomas Li, Riqiang Gao, James G. Terry, Yuankai Huo +6 more

Identification and multimodal characterization of a specialized epithelial cell type associated with Crohn’s disease

Nature Communications(2024)10.1038/s41467-024-51580-7

N/A

1.1DataRank · unranked

49 citations

Alan J. Simmons, Caroline V. Hawkins, Sophie Chiron, Marisol Ramirez‐Solano, Naila Tasneem +34 more

Sex and APOE ε4 allele differences in longitudinal white matter microstructure in multiple cohorts of aging and Alzheimer's disease

Alzheimer s & Dementia(2024)10.1002/alz.14343

Top 42%

0.452DataRank

Top 42%14 citations

Aditi Sathe, Dimitrios Zaras, Yisu Yang, Alaina Durant, Kacie Deters +43 more

Enhancing thoracic disease detection using chest X-rays from PubMed Central Open Access

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.106962

N/A

0.428DataRank · unranked

7 citations

Bojian Hou, Swati Mishra, Tianyuan Yao, Yuankai Huo, Qian Yang +4 more

Multi-contrast computed tomography healthy kidney atlas

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.105555

Top 51%

0.341DataRank

Top 51%8 citations

Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond C. Harris +6 more

Multi-contrast computed tomography atlas of healthy pancreas with dense displacement sampling registration

Journal of Medical Imaging(2025)10.1117/1.jmi.12.2.024006

Top 78%

0.104DataRank

Top 78%1 citations

Ho Hin Lee, Yucheng Tang, Xin Yu, Qi Yang, Michael E. Kim +6 more

Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning

The Journal of Machine Learning for Biomedical Imaging(2022)10.59275/j.melba.2022-5aa9

Top 78%

0.104DataRank

Top 78%1 citations

Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian +11 more

Body Part Regression With Self-Supervision

IEEE Transactions on Medical Imaging(2021)10.1109/tmi.2021.3058281

N/A

0DataRank · unranked

25 citations

Riqiang Gao, Shizhong Han, Yunqiang Chen, Dashan Gao, Vishwesh Nath +7 more

Default mode network connectivity and cognition in the aging brain: the effects of age, sex, and APOE genotype.

Neurobiology of Aging(2021)10.1016/j.neurobiolaging.2021.03.013

N/A

0DataRank · unranked

17 citations

Lori L. Beason‐Held, Yang An, Owen A. Williams, Yuankai Huo, Bennett A. Landman +3 more

ASIST: Annotation-free synthetic instance segmentation and tracking by adversarial simulations

Computers in Biology and Medicine(2021)10.1016/j.compbiomed.2021.104501

N/A

0DataRank · unranked

16 citations

Isabella Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis +4 more

Validation and estimation of spleen volume via computer-assisted segmentation on clinically acquired CT scans

Journal of Medical Imaging(2021)10.1117/1.jmi.8.1.014004

N/A

0DataRank · unranked

10 citations

Yucheng Tang, Riqiang Gao, Shunxing Bao, Yuankai Huo, Matthew T. McKenna +4 more

Phase identification for dynamic CT enhancements with generative adversarial network

Medical Physics(2021)10.1002/mp.14706

N/A

0DataRank · unranked

6 citations

Riqiang Gao, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Camilo Bermudez +5 more

Corrigendum to “Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline” [Comput. Biol. Med. 107 (2019) 109–117]

Computers in Biology and Medicine(2021)10.1016/j.compbiomed.2020.103684

N/A

0DataRank · unranked

1 citations

Yuankai Huo, Richard G. Abramson, Richard Alan Peters, Albert Assad, Tamara K. Moyo +3 more

Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation

arXiv (Cornell University)(2021)10.48550/arxiv.2101.07654

N/A

0DataRank · unranked

0 citations

Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo +1 more

Reducing uncertainty in cancer risk estimation for patients with indeterminate pulmonary nodules using an integrated deep learning model

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.106113

N/A

0DataRank · unranked

21 citations

Thomas Li, Yucheng Tang, Kaiwen Xu, Mirza S. Khan, Michael N. Kammer +8 more

Generalizing deep learning brain segmentation for skull removal and intracranial measurements

Magnetic Resonance Imaging(2022)10.1016/j.mri.2022.01.004

N/A

0DataRank · unranked

18 citations

Yuankai Huo, Blake E. Dewey, Ying Wei, Ilwoo Lyu, Bennett A. Landman +1 more

The effects of prenatal bisphenol A exposure on brain volume of children and young mice

Environmental Research(2022)10.1016/j.envres.2022.114040

N/A

0DataRank · unranked

18 citations

Jess E. Reynolds, Madison Long, Curtis Ostertag, Tyler Pollock, Max Hamilton +10 more

Obesity and acute stress modulate appetite and neural responses in food word reactivity task

PLoS ONE(2022)10.1371/journal.pone.0271915

N/A

0DataRank · unranked

13 citations

Leora Benson, Afroditi Papantoni, Liuyi Chen, Yuankai Huo, Zhishun Wang +3 more

Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis

Journal of Digital Imaging(2022)10.1007/s10278-022-00679-8

N/A

0DataRank · unranked

1 citations

Brian D. Boyd, Praitayini Kanakaraj, Karthik Ramadass, Francisco A. C. Meyer, Yuqian Liu +8 more

Superficial white matter across the lifespan: volume, thickness, change, and relationship with cortical features

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.20.500818

N/A

0DataRank · unranked

5 citations

Derek B. Archer, François Rheault, Ilwoo Lyu, Yuankai Huo, Leon Y. Cai +6 more

UNesT: Local spatial representation learning with hierarchical transformer for efficient medical segmentation

Medical Image Analysis(2023)10.1016/j.media.2023.102939

N/A

0DataRank · unranked

103 citations

Qi Yang, Yinchi Zhou, Leon Y. Cai, Riqiang Gao, Ho Hin Lee +10 more

Superficial white matter across development, young adulthood, and aging: volume, thickness, and relationship with cortical features

Brain Structure and Function(2023)10.1007/s00429-023-02642-x

N/A

0DataRank · unranked

44 citations

Derek B. Archer, François Rheault, Ilwoo Lyu, Yuankai Huo, Leon Y. Cai +6 more

Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation

IEEE Transactions on Biomedical Engineering(2023)10.1109/tbme.2023.3260739

N/A

0DataRank · unranked

38 citations

Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad +7 more

Prenatal depressive symptoms and childhood development of brain limbic and default mode network structure

Human Brain Mapping(2023)10.1002/hbm.26216

N/A

0DataRank · unranked

11 citations

Xiangyu Long, Jess E. Reynolds, Gerald F. Giesbrecht, Deborah Dewey, Nicole Létourneau +4 more

Semantic-Aware Contrastive Learning for Multi-Object Medical Image Segmentation

IEEE Journal of Biomedical and Health Informatics(2023)10.1109/jbhi.2023.3285230

N/A

0DataRank · unranked

8 citations

Yucheng Tang, Qi Yang, Xin Yu, Leon Y. Cai, Lucas W. Remedios +4 more

Digital Modeling on Large Kernel Metamaterial Neural Network

Journal of Imaging Science and Technology(2023)10.2352/j.imagingsci.technol.2023.67.6.060404

N/A

0DataRank · unranked

7 citations

Hanyu Zheng, Brandon T. Swartz, Ho Hin Lee, Zuhayr Asad, Ivan I. Kravchenko +3 more

Single slice thigh CT muscle group segmentation with domain adaptation and self-training

Journal of Medical Imaging(2023)10.1117/1.jmi.10.4.044001

N/A

0DataRank · unranked

5 citations

Xin Yu, Ho Hin Lee, Leon Y. Cai, Kaiwen Xu, Shunxing Bao +6 more

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

arXiv (Cornell University)(2023)10.48550/arxiv.2304.04155

N/A

0DataRank · unranked

97 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

A Specialized Epithelial Cell Type Regulating Mucosal Immunity and Driving Human Crohn’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.30.560293

N/A

0DataRank · unranked

10 citations

Alan J. Simmons, Sophie Chiron, Marisol Ramirez‐Solano, Naila Tasneem, Harsimran Kaur +24 more

Deep constrained spherical deconvolution for robust harmonization

PubMed(2023)10.1117/12.2654398

N/A

0DataRank · unranked

6 citations

François Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy R. Newlin +7 more

Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-Empowered Learning

Lecture notes in computer science(2023)10.1007/978-3-031-43987-2_48

N/A

0DataRank · unranked

6 citations

Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev +9 more

Intelligent Multi-channel Meta-imagers for Accelerating Machine Vision

arXiv (Cornell University)(2023)10.48550/arxiv.2306.07365

N/A

0DataRank · unranked

5 citations

Quan Liu, Ivan I. Kravchenko, Xiaomeng Zhang, Yuankai Huo, Jason Valentine +1 more

Predicting Crohn’s disease severity in the colon using mixed cell nucleus density from pseudo labels

PubMed(2023)10.1117/12.2653918

N/A

0DataRank · unranked

4 citations

Shunxing Bao, Cailey I. Kerley, Leon Y. Cai, François Rheault, Ruining Deng +10 more

Unsupervised registration refinement for generating unbiased eye atlas

PubMed(2023)10.1117/12.2653753

N/A

0DataRank · unranked

3 citations

Yucheng Tang, Shunxing Bao, Qi Yang, Xin Xu, Kevin L. Schey +4 more

Deep whole brain segmentation of 7T structural MRI

PubMed(2023)10.1117/12.2654108

N/A

0DataRank · unranked

2 citations

Xin Yu, Leon Y. Cai, Yucheng Tang, Shunxing Bao, Cailey I. Kerley +10 more

Robust Fiber Orientation Distribution Function Estimation Using Deep Constrained Spherical Deconvolution for Diffusion MRI

arXiv (Cornell University)(2023)10.48550/arxiv.2306.02900

N/A

0DataRank · unranked

2 citations

François Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy R. Newlin +9 more

Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology

arXiv (Cornell University)(2023)10.48550/arxiv.2308.05782

N/A

0DataRank · unranked

1 citations

Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo, Franklin Hu

Deep Learning-Based Open Source Toolkit for Eosinophil Detection in Pediatric Eosinophilic Esophagitis

arXiv (Cornell University)(2023)10.48550/arxiv.2308.06333

N/A

0DataRank · unranked

1 citations

Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa, Girish Hiremath +3 more

Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers

arXiv (Cornell University)(2023)10.48550/arxiv.2309.02563

N/A

0DataRank · unranked

1 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

Enhancing Hierarchical Transformers for Whole Brain Segmentation with Intracranial Measurements Integration

arXiv (Cornell University)(2023)10.48550/arxiv.2309.04071

N/A

0DataRank · unranked

1 citations

Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Yuankai Huo +2 more

Topological-preserving membrane skeleton segmentation in multiplex immunofluorescence imaging

PubMed(2023)10.1117/12.2654087

N/A

0DataRank · unranked

0 citations

Can Cui, Jia Li, Yucheng Tang, Ho Hin Lee, Ruining Deng +13 more

Exploring shared memory architectures for end-to-end gigapixel deep learning

arXiv (Cornell University)(2023)10.48550/arxiv.2304.12149

N/A

0DataRank · unranked

0 citations

Leon Y. Cai, Samuel W. Remedios, Karthik Ramadass, Aravind Krishnan, Ruining Deng +6 more

Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2306.00047

N/A

0DataRank · unranked

0 citations

Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev +9 more

Eosinophils Instance Object Segmentation on Whole Slide Imaging Using Multi-label Circle Representation

arXiv (Cornell University)(2023)10.48550/arxiv.2308.08974

N/A

0DataRank · unranked

0 citations

Ruining Deng, Juming Xiong, Regina N. Tyree, Hernán Correa, Girish Hiremath +3 more

Cell Spatial Analysis in Crohn's Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures

arXiv (Cornell University)(2023)10.48550/arxiv.2308.10166

N/A

0DataRank · unranked

0 citations

Si-Chen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun +14 more

Deep conditional generative models for longitudinal single-slice abdominal computed tomography harmonization

arXiv (Cornell University)(2023)10.48550/arxiv.2309.09392

N/A

0DataRank · unranked

0 citations

Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai +6 more

Multichannel meta-imagers for accelerating machine vision

Nature Nanotechnology(2024)10.1038/s41565-023-01557-2

N/A

0DataRank · unranked

108 citations

Quan Liu, Ivan I. Kravchenko, Xiaomeng Zhang, Yuankai Huo, Jason Valentine +1 more

Cross-scale multi-instance learning for pathological image diagnosis

Medical Image Analysis(2024)10.1016/j.media.2024.103124

N/A

0DataRank · unranked

84 citations

Can Cui, Lucas W. Remedios, Shunxing Bao, R. Michael Womick, Sophie Chiron +10 more

Robust fiber orientation distribution function estimation using deep constrained spherical deconvolution for diffusion-weighted magnetic resonance imaging

Journal of Medical Imaging(2024)10.1117/1.jmi.11.1.014005

N/A

0DataRank · unranked

10 citations

François Rheault, Leon Y. Cai, Vishwesh Nath, Zuhayr Asad, Nancy R. Newlin +9 more

Deep conditional generative model for longitudinal single-slice abdominal computed tomography harmonization

Journal of Medical Imaging(2024)10.1117/1.jmi.11.2.024008

N/A

0DataRank · unranked

4 citations

Qi Yang, Yucheng Tang, Riqiang Gao, Shunxing Bao, Leon Y. Cai +6 more

Field-of-view extension for brain diffusion MRI via deep generative models

Journal of Medical Imaging(2024)10.1117/1.jmi.11.4.044008

N/A

0DataRank · unranked

4 citations

Shunxing Bao, Michael Kim, Nancy R. Newlin, Praitayini Kanakaraj, Tianyuan Yao +11 more

Super-resolution multi-contrast unbiased eye atlases with deep probabilistic refinement

Journal of Medical Imaging(2024)10.1117/1.jmi.11.6.064004

N/A

0DataRank · unranked

1 citations

Adam M. Saunders, Michael E. Kim, Samuel W. Remedios, Lucas W. Remedios, Yucheng Tang +13 more

All-in-SAM: from Weak Annotation to Pixel-wise Nuclei Segmentation with Prompt-based Finetuning

Journal of Physics Conference Series(2024)10.1088/1742-6596/2722/1/012012

N/A

0DataRank · unranked

40 citations

Ruining Deng, Quan Liu, Tianyuan Yao, Shunxing Bao, Lucas W. Remedios +4 more

PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation

PubMed(2024)10.1109/cvpr52733.2024.01115

N/A

0DataRank · unranked

12 citations

Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong +9 more

Predicting age from white matter diffusivity with residual learning

PubMed(2024)10.1117/12.3006525

N/A

0DataRank · unranked

5 citations

Michael E. Kim, Ho Hin Lee, Qi Yang, Nazirah Mohd Khairi, Praitayini Kanakaraj +14 more

HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis

Lecture notes in computer science(2024)10.1007/978-3-031-72083-3_15

N/A

0DataRank · unranked

5 citations

Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao +8 more

Multi-scale multi-site renal microvascular structures segmentation for whole slide imaging in renal pathology

PubMed(2024)10.1117/12.3006262

N/A

0DataRank · unranked

4 citations

Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo, Franklin Hu

Deep learning-based open source toolkit for eosinophil detection in pediatric eosinophilic esophagitis

PubMed(2024)10.1117/12.3006520

N/A

0DataRank · unranked

3 citations

Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa, Girish Hiremath +3 more

Learning-based free-water correction using single-shell diffusion MRI

PubMed(2024)10.1117/12.3006901

N/A

0DataRank · unranked

3 citations

Derek B. Archer, Praitayini Kanakaraj, Nancy R. Newlin, Shunxing Bao, Daniel Moyer +4 more

Leverage weekly annotation to pixel-wise annotation via zero-shot segment anything model for molecular-empowered learning

PubMed(2024)10.1117/12.3006577

N/A

0DataRank · unranked

3 citations

Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, Yuankai Huo +1 more

Nucleus subtype classification using inter-modality learning

PubMed(2024)10.1117/12.3006237

N/A

0DataRank · unranked

2 citations

Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Li +12 more

Cell spatial analysis in Crohn's disease: unveiling local cell arrangement pattern with graph-based signatures

PubMed(2024)10.1117/12.3006675

N/A

0DataRank · unranked

2 citations

Si-Chen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun +15 more

Enhancing hierarchical transformers for whole brain segmentation with intracranial measurements integration

PubMed(2024)10.1117/12.3009084

N/A

0DataRank · unranked

2 citations

Yucheng Tang, Qi Yang, Ho Hin Lee, Shunxing Bao, Yuankai Huo +2 more

Evaluation of mean shift, ComBat, and CycleGAN for harmonizing brain connectivity matrices across sites

PubMed(2024)10.1117/12.3005563

N/A

0DataRank · unranked

2 citations

Nancy R. Newlin, Michael E. Kim, Chenyu Gao, Praitayini Kanakaraj, Aravind R. Krishnan +12 more

Eosinophils instance object segmentation on whole slide imaging using multi-label circle representation

PubMed(2024)10.1117/12.3005995

N/A

0DataRank · unranked

2 citations

Ruining Deng, Juming Xiong, Regina N. Tyree, Hernán Correa, Girish Hiremath +3 more

Persistence Image from 3D Medical Image: Superpixel and Optimized Gaussian Coefficient

arXiv (Cornell University)(2024)10.48550/arxiv.2408.07905

N/A

0DataRank · unranked

2 citations

Yash Singh, Khaled Younis, Shunxing Bao, Yuankai Huo, Zhu, Yanfan

Spatial pathomics toolkit for quantitative analysis of podocyte nuclei with histology and spatial transcriptomics data in renal pathology

PubMed(2024)10.1117/12.3006318

N/A

0DataRank · unranked

1 citations

Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao +7 more

Data-driven Nucleus Subclassification on Colon H&E using Style-transferred Digital Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2407.06116

N/A

0DataRank · unranked

1 citations

Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Li +14 more

GLAM: Glomeruli Segmentation for Human Pathological Lesions using Adapted Mouse Model

arXiv (Cornell University)(2024)10.48550/arxiv.2407.18390

N/A

0DataRank · unranked

1 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Influence of Early through Late Fusion on Pancreas Segmentation from Imperfectly Registered Multimodal MRI

arXiv (Cornell University)(2024)10.48550/arxiv.2409.04563

N/A

0DataRank · unranked

1 citations

Han Liu, Samuel W. Remedios, Lianrui Zuo, Adam M. Saunders, Shunxing Bao +5 more

Nucleus subtype classification using inter-modality learning

arXiv (Cornell University)(2024)10.48550/arxiv.2401.05602

N/A

0DataRank · unranked

0 citations

Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Y. Cai, Thomas Li +12 more

Evaluation of Mean Shift, ComBat, and CycleGAN for Harmonizing Brain Connectivity Matrices Across Sites

arXiv (Cornell University)(2024)10.48550/arxiv.2401.06798

N/A

0DataRank · unranked

0 citations

Nancy R. Newlin, Michael E. Kim, Chenyu Gao, Praitayini Kanakaraj, Aravind R. Krishnan +13 more

Circle Representation for Medical Instance Object Segmentation

arXiv (Cornell University)(2024)10.48550/arxiv.2403.11507

N/A

0DataRank · unranked

0 citations

Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa +6 more

Evaluation kidney layer segmentation on whole slide imaging using convolutional neural networks and transformers

PubMed(2024)10.1117/12.3006865

N/A

0DataRank · unranked

0 citations

Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang +4 more

High-performance data management for whole slide image analysis in digital pathology

PubMed(2024)10.1117/12.3006273

N/A

0DataRank · unranked

0 citations

Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang +6 more

ExtremeMETA: High-speed Lightweight Image Segmentation Model by Remodeling Multi-channel Metamaterial Imagers

arXiv (Cornell University)(2024)10.48550/arxiv.2405.17568

N/A

0DataRank · unranked

0 citations

Brandon T. Swartz, Ivan I. Kravchenko, Jason Valentine, Yuankai Huo, Quan Liu

Sex, racial, and APOE -ε4 allele differences in longitudinal white matter microstructure in multiple cohorts of aging and Alzheimer’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.10.598357

Top 100%

0DataRank

Top 100%0 citations

Aditi Sathe, Dimitrios Zaras, Yisu Yang, Alaina Durant, Kacie Deters +41 more

Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results

arXiv (Cornell University)(2024)10.48550/arxiv.2406.19540

N/A

0DataRank · unranked

0 citations

Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong, Guo, Junlin +3 more

Mitigating Over-Saturated Fluorescence Images Through a Semi-Supervised Generative Adversarial Network

PubMed(2024)10.1109/isbi56570.2024.10635687

N/A

0DataRank · unranked

0 citations

Junlin Guo, Ho Hin Lee, Ruining Deng, Can Cui, Lucas W. Remedios +14 more

Cross-Species Data Integration for Enhanced Layer Segmentation in Kidney Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.09278

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Yitian Long, Yu Wang, Yaohong Wang +4 more

Dataset Distillation in Medical Imaging: A Feasibility Study

arXiv (Cornell University)(2024)10.48550/arxiv.2407.14429

N/A

0DataRank · unranked

0 citations

Can Cui, Quan Liu, Ruining Deng, Tianyuan Yao, Marilyn Lionts +2 more

Assessment of Cell Nuclei AI Foundation Models in Kidney Pathology

arXiv (Cornell University)(2024)10.48550/arxiv.2408.06381

N/A

0DataRank · unranked

0 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Tao, Zhewen +12 more

Automatic Image Unfolding and Stitching Framework for Esophageal Lining Video Based on Density-Weighted Feature Matching

arXiv (Cornell University)(2024)10.48550/arxiv.2410.01148

N/A

0DataRank · unranked

0 citations

Juming Xiong, Ruining Deng, Tianyuan Yao, Regina N. Tyree, Girish Hiremath +2 more

Cross-organ Deployment of EOS Detection AI without Retraining: Feasibility and Limitation

arXiv (Cornell University)(2024)10.48550/arxiv.2411.15942

N/A

0DataRank · unranked

0 citations

Juming Xiong, Tianyuan Yao, Ruining Deng, Junlin Guo, Jialin Yue +3 more

Glo-In-One-v2: Holistic Identification of Glomerular Cells, Tissues, and Lesions in Human and Mouse Histopathology

arXiv (Cornell University)(2024)10.48550/arxiv.2411.16961

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

GloFinder: AI-empowered QuPath Plugin for WSI-level Glomerular Detection, Visualization, and Curation

arXiv (Cornell University)(2024)10.48550/arxiv.2411.18795

N/A

0DataRank · unranked

0 citations

Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo, Quan Liu +5 more

Optimizing Transmit Field Inhomogeneity of Parallel RF Transmit Design in 7T MRI using Deep Learning

arXiv (Cornell University)(2024)10.48550/arxiv.2408.11323

N/A

0DataRank · unranked

0 citations

H. Liang, Xiao Wang, Xinqiang Yan, Yuankai Huo, Zhengyi Lu

Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging

Electronic Imaging(2025)10.2352/ei.2025.37.14.coimg-132

N/A

0DataRank · unranked

47 citations

Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao +11 more

The effect of Alzheimer's disease genetic factors on limbic white matter microstructure

Alzheimer s & Dementia(2025)10.1002/alz.70130

N/A

0DataRank · unranked

8 citations

Aditi Sathe, Dimitrios Zaras, Yisu Yang, Alaina Durant, Michael E. Kim +43 more

Glo-In-One-v2: holistic identification of glomerular cells, tissues, and lesions in human and mouse histopathology

Journal of Medical Imaging(2025)10.1117/1.jmi.12.6.061406

N/A

0DataRank · unranked

5 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Influence of early through late fusion on pancreas segmentation from imperfectly registered multimodal magnetic resonance imaging

Journal of Medical Imaging(2025)10.1117/1.jmi.12.2.024008

N/A

0DataRank · unranked

4 citations

Han Liu, Samuel W. Remedios, Lianrui Zuo, Adam M. Saunders, Shunxing Bao +5 more

Evaluating cell AI foundation models in kidney pathology with human-in-the-loop enrichment

Communications Medicine(2025)10.1038/s43856-025-01205-x

N/A

0DataRank · unranked

4 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +13 more

ZeroReg3D: a zero-shot registration pipeline for 3D consecutive histopathology image reconstruction

Journal of Medical Imaging(2025)10.1117/1.jmi.12.4.044002

N/A

0DataRank · unranked

2 citations

Ruining Deng, Jialin Yue, Siqi Lu, Junlin Guo, Marilyn Lionts +9 more

GloFinder: AI-empowered QuPath plugin for WSI-level glomerular detection, visualization, and curation

Journal of Pathology Informatics(2025)10.1016/j.jpi.2025.100433

N/A

0DataRank · unranked

4 citations

Tianyuan Yao, Ruining Deng, Siqi Lu, Junlin Guo, Quan Liu +5 more

Deep learning-based free-water correction for single-shell diffusion MRI

Magnetic Resonance Imaging(2025)10.1016/j.mri.2025.110326

N/A

0DataRank · unranked

3 citations

Derek B. Archer, Praitayini Kanakaraj, Nancy R. Newlin, Shunxing Bao, Daniel Moyer +4 more

Brain age identification from diffusion MRI synergistically predicts neurodegenerative disease

Imaging Neuroscience(2025)10.1162/imag_a_00552

N/A

0DataRank · unranked

3 citations

Michael E. Kim, Karthik Ramadass, Praitayini Kanakaraj, Aravind R. Krishnan, Adam M. Saunders +25 more

stImage: a versatile framework for optimizing spatial transcriptomic analysis through customizable deep histology and location informed integration

Briefings in Bioinformatics(2025)10.1093/bib/bbaf429

N/A

0DataRank · unranked

2 citations

Haichun Yang, Ruining Deng, Yuankai Huo, Qi Liu, Yu Shyr +2 more

Fast-RF-Shimming: Accelerate RF shimming in 7T MRI using deep learning

Meta-Radiology(2025)10.1016/j.metrad.2025.100166

N/A

0DataRank · unranked

1 citations

Hao Liang, Ming Lu, Xiao Wang, Xinqiang Yan, Yuankai Huo +1 more

Dataset distillation in medical imaging: a feasibility study

PubMed(2025)10.1117/12.3047345

N/A

0DataRank · unranked

4 citations

Can Cui, Quan Liu, Ruining Deng, Tianyuan Yao, Marilyn Lionts +2 more

Assessment of cell nuclei AI foundation models in kidney pathology

PubMed(2025)10.1117/12.3047301

N/A

0DataRank · unranked

3 citations

Siqi Lu, Can Cui, Ruining Deng, Tianyuan Yao, Zhewen Tao +12 more

Post-Training Quantization for 3D Medical Image Segmentation: A Practical Study on Real Inference Engines

arXiv (Cornell University)(2025)10.48550/arxiv.2501.17343

N/A

0DataRank · unranked

0 citations

Ritchie Zhao, Ye Yu, Bin Liu, Tianyuan Yao, Junchao Zhu +4 more

Towards fine-grained renal vasculature segmentation: full-scale hierarchical learning with FH-Seg

PubMed(2025)10.1117/12.3046532

N/A

0DataRank · unranked

1 citations

Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang +2 more

Scale-up Unlearnable Examples Learning with High-Performance Computing

arXiv (Cornell University)(2025)10.48550/arxiv.2501.06080

N/A

0DataRank · unranked

0 citations

Lyngaas, Issac, Murali Gopalakrishnan Meena, Mary Ellen Koran, Bradley Malin, Daniel Moyer +6 more

PySpatial: A High-Speed Whole Slide Image Pathomics Toolkit

arXiv (Cornell University)(2025)10.48550/arxiv.2501.06151

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

Fast-RF-Shimming: Accelerate RF Shimming in 7T MRI using Deep Learning

arXiv (Cornell University)(2025)10.48550/arxiv.2501.12157

N/A

0DataRank · unranked

0 citations

Liang Hao, Ming Lu, Xiao Wang, Xinqiang Yan, Yuankai Huo +1 more

Polyhedra Encoding Transformers: Enhancing Diffusion MRI Analysis Beyond Voxel and Volumetric Embedding

arXiv (Cornell University)(2025)10.48550/arxiv.2501.13352

N/A

0DataRank · unranked

0 citations

Zhiyuan Li, Praitayini Kanakaraj, Derek B. Archer, Kurt G. Schilling, Lori L. Beason‐Held +4 more

Write Sentence with Images: Revisit the Large Vision Model with Visual Sentence

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-172

N/A

0DataRank · unranked

0 citations

Can Cui, Ruining Deng, Tianyuan Yao, Yuechen Yang, Yucheng Tang +2 more

mTREE: Multi-level Text-guided Representation End-to-end Learning for Whole Slide Image Analysis

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-183

N/A

0DataRank · unranked

0 citations

Ruining Deng, Can Cui, Tianyuan Yao, Yuechen Yang, Vishwesh Nath +5 more

Scale-up Unlearnable Examples Learning with High-performance Computing

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-184

N/A

0DataRank · unranked

0 citations

Isaac Lyngaas, Murali Gopalakrishnan Meena, Mary Ellen Koran, Bradley Malin, Daniel Moyer +6 more

PySpatial: A high-speed whole slide image pathomics toolkit

Electronic Imaging(2025)10.2352/ei.2025.37.12.hpci-177

N/A

0DataRank · unranked

0 citations

Yu Wang, Tianyuan Yao, Ruining Deng, Mengmeng Yin, Shilin Zhao +3 more

Enhanced Feature-based Image Stitching for Endoscopic Videos in Pediatric Eosinophilic Esophagitis

arXiv (Cornell University)(2025)10.48550/arxiv.2502.04207

N/A

0DataRank · unranked

0 citations

Muyang Li, Ruining Deng, Tianyuan Yao, Bao, Shunxing, Regina N. Tyree +3 more

Expanding Training Data for Endoscopic Phenotyping of Eosinophilic Esophagitis

arXiv (Cornell University)(2025)10.48550/arxiv.2502.04199

N/A

0DataRank · unranked

0 citations

Xiong, Hou, Quan Liu, Ruining Deng, Regina N. Tyree, Girish Hiremath +2 more

Towards Fine-grained Renal Vasculature Segmentation: Full-Scale Hierarchical Learning with FH-Seg

arXiv (Cornell University)(2025)10.48550/arxiv.2502.05320

N/A

0DataRank · unranked

0 citations

Zhongze Wu, Xiu Su, Lining Yu, Ruining Deng, Haichun Yang +2 more

CASC-AI: Consensus-aware Self-corrective Learning for Noise Cell Segmentation

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07302

N/A

0DataRank · unranked

0 citations

Yihe Yang, David J. Pisapia, Benjamin Liechty, Junchao Zhu, Juming Xiong +13 more

KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level

arXiv (Cornell University)(2025)10.48550/arxiv.2502.07288

Top 100%

0DataRank

Top 100%0 citations

Tianyuan Yao, Yucheng Tang, Junlin Guo, Siqi Lu, Juming Xiong +42 more

Persistence image from 3D medical image: superpixel and optimized Gaussian coefficient

PubMed(2025)10.1117/12.3047078

N/A

0DataRank · unranked

0 citations

Yash Singh, Khaled Younis, Shunxing Bao, Yuankai Huo, Yanfei Zhu

GLAM: glomeruli segmentation for human pathological lesions using adapted mouse model

PubMed(2025)10.1117/12.3046823

N/A

0DataRank · unranked

0 citations

Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui +7 more

Cross-organ deployment of EOS detection AI without retraining: feasibility and limitation

PubMed(2025)10.1117/12.3047040

N/A

0DataRank · unranked

0 citations

Juming Xiong, Tianyuan Yao, Ruining Deng, Junlin Guo, Jialin Yue +3 more

Identifying cellular neighborhood phenotypes differentiating normal and quiescent Crohn’s disease via MxIF

PubMed(2025)10.1117/12.3047121

N/A

0DataRank · unranked

0 citations

Shunxing Bao, Aravind R. Krishnan, Lucas W. Remedios, Michael E. Kim, Adam M. Saunders +9 more

Expanding training data for endoscopic phenotyping of eosinophilic esophagitis

PubMed(2025)10.1117/12.3047356

N/A

0DataRank · unranked

0 citations

Hao Xiong, Quan Liu, Ruining Deng, Regina N. Tyree, Girish Hiremath +2 more

Polyhedra encoding transformers: enhancing diffusion MRI analysis beyond voxel and volumetric embedding

PubMed(2025)10.1117/12.3047244

N/A

0DataRank · unranked

0 citations

Zhiyuan Li, Praitayini Kanakaraj, Derek B. Archer, Kurt G. Schilling, Lori L. Beason‐Held +4 more

DyMorph-B2I: Dynamic and Morphology-Guided Binary-to-Instance Segmentation for Renal Pathology

arXiv (Cornell University)(2025)10.48550/arxiv.2508.15208

N/A

0DataRank · unranked

0 citations

Yang, Yuechen, Zhu, Yanfan, Haichun Yang, Yuankai Huo, Paul D. Simonson +5 more

Computer Vision Methods for Spatial Transcriptomics: A Survey

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.13.682148

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Siqi Lu, Chongyu Qu +12 more

Fine-grained multiclass nuclei segmentation with molecular empowered all-in-SAM model

Journal of Medical Imaging(2025)10.1117/1.jmi.12.5.057501

N/A

0DataRank · unranked

0 citations

Can Cui, Ruining Deng, Yucheng Tang, Quan Liu, Tianyuan Yao +5 more

PHASE: Personalized Head-based Automatic Simulation for Electromagnetic properties in 7T MRI

Magnetic Resonance Imaging(2025)10.1016/j.mri.2025.110532

N/A

0DataRank · unranked

0 citations

H. Liang, Ming Lu, Dann Martin, Benjamin M. Hardy, Benoît M. Dawant +4 more

Img2ST-Net: Efficient High-Resolution Spatial Omics Prediction from Whole Slide Histology Images via Fully Convolutional Image-to-Image Learning

arXiv (Cornell University)(2025)10.48550/arxiv.2508.14393

N/A

0DataRank · unranked

0 citations

Ruining Deng, Junlin Guo, Tianyuan Yao, Juming Xiong, Chongyu Qu +8 more

Circle Representation for Medical Instance Object Segmentation

The Journal of Machine Learning for Biomedical Imaging(2025)10.59275/j.melba.2025-8bad

N/A

0DataRank · unranked

0 citations

Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernán Correa +6 more

Quantitative benchmarking of anomaly detection methods in digital pathology images

Machine Learning Health(2025)10.1088/3049-477x/ae0f9f

N/A

0DataRank · unranked

0 citations

Xindong Zheng, Ruining Deng, Quan Liu, Tianyuan Yao, Keith T. Wilson +6 more

Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels

arXiv (Cornell University)(2025)10.48550/arxiv.2505.22568

N/A

0DataRank · unranked

0 citations

Thomas Z. Li, Lucas W. Remedios, Michael E. Kim, Chenyu Gao, Gaurav Rudravaram +10 more

Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results

NeuroImage(2020)10.1016/j.neuroimage.2020.117128

N/A

0DataRank · unranked

88 citations

Elisenda Bonet-Carné, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart +34 more

Fine-grained Multi-class Nuclei Segmentation with Molecular-empowered All-in-SAM Model

arXiv (Cornell University)(2025)10.48550/arxiv.2508.15751

N/A

0DataRank · unranked

0 citations

Can Cui, Ruining Deng, Yucheng Tang, Quan Liu, Tianyuan Yao +5 more

Multi-path x-D recurrent neural networks for collaborative image classification

Neurocomputing(2020)10.1016/j.neucom.2020.02.033

N/A

0DataRank · unranked

12 citations

Yuankai Huo, Shunxing Bao, Yucheng Tang, Sanja Antic, Emily S. Epstein +6 more

Time-distanced gates in long short-term memory networks

Medical Image Analysis(2020)10.1016/j.media.2020.101785

N/A

0DataRank · unranked

38 citations

Yucheng Tang, Kaiwen Xu, Yuankai Huo, Shunxing Bao, Sanja Antic +7 more

Reconstruction of respiratory variation signals from fMRI data

NeuroImage(2020)10.1016/j.neuroimage.2020.117459

N/A

0DataRank · unranked

27 citations

Roza G. Bayrak, Yuankai Huo, Catie Chang, Jorge A. Salas

Generalizing deep whole-brain segmentation for post-contrast MRI with transfer learning

Journal of Medical Imaging(2020)10.1117/1.jmi.7.6.064004

N/A

0DataRank · unranked

5 citations

Samuel W. Remedios, Karthik Ramadass, Maureen McHugo, Stephan Heckers, Yuankai Huo +2 more

Generalizing deep whole brain segmentation for pediatric and post-contrast MRI with augmented transfer learning

PubMed(2020)10.1117/12.2548622

N/A

0DataRank · unranked

1 citations

Justin A. Blaber, Samuel W. Remedios, Jess E. Reynolds, Catherine Lebel, Maureen McHugo +4 more

AI applications in renal pathology

Kidney International(2021)10.1016/j.kint.2021.01.015

N/A

0DataRank · unranked

83 citations

Ruining Deng, Quan Liu, Agnes B. Fogo, Haichun Yang, Yuankai Huo

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