Scott A. Handley

Also affiliated with Institute for Systems Biology

MedicineBiochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile

0.115Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples

Microbiology Resource Announcements(2023)10.1128/mra.00130-23

Top 72%

0.115DataRank

Top 72%1 citations

Nicole Jacobson, Michelle A. An, Lindsay Droit, Alejandro A. Vega, Mariel Rosales +10 more

Papers

Driven by 38 papers — median percentile 14. Top paper: “In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains”.

In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains

Research Square(2021)10.21203/rs.3.rs-448370/v1

N/A

1.5DataRank · unranked

31 citations

Rita Chen, Emma S. Winkler, James Brett Case, Ishmael D. Aziati, Traci L. Bricker +27 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

HIV-associated gut microbial alterations are dependent on host and geographic context

Nature Communications(2024)10.1038/s41467-023-44566-4

N/A

0.895DataRank · unranked

33 citations

David B. Gootenberg, Jesús M. Luévano, Jeffrey M. Paer, Matthew R. Hayward, Juliet T. Bramante +16 more

Type I interferon signaling in dendritic cells limits direct antigen presentation and CD8 + T cell responses against an arthritogenic alphavirus

mBio(2024)10.1128/mbio.02930-24

N/A

0.587DataRank · unranked

14 citations

Leran Wang, Brian C. Ware, Ngan Wagoner, Ray A. Ohara, Tiantian Liu +7 more

Tracking the prevalence and emergence of SARS-CoV-2 variants of concern using a regional genomic surveillance program

Microbiology Spectrum(2024)10.1128/spectrum.04225-23

N/A

0.494DataRank · unranked

9 citations

Lindsay Droit, Binita Febles, Catarina Fronick, Lisa Cook, Scott A. Handley +3 more

Draft genomes of 12 Bifidobacterium isolates from human IBD fecal samples

Microbiology Resource Announcements(2023)10.1128/mra.00130-23

Top 72%

0.115DataRank

Top 72%1 citations

Nicole Jacobson, Michelle A. An, Lindsay Droit, Alejandro A. Vega, Mariel Rosales +10 more

Multi-Omics Analyses Show Disease, Diet, and Transcriptome Interactions With the Virome

Gastroenterology(2021)10.1053/j.gastro.2021.06.077

N/A

0DataRank · unranked

72 citations

Ruben A. Mars, Abigail J. Johnson, Tonya Ward, Sambhawa Priya, Heather Lekatz +10 more

Enteric virome negatively affects seroconversion following oral rotavirus vaccination in a longitudinally sampled cohort of Ghanaian infants

Cell Host & Microbe(2021)10.1016/j.chom.2021.12.002

N/A

0DataRank · unranked

53 citations

George Armah, Francis E. Dennis, Leran Wang, Rachel Rodgers, Lindsay Droit +4 more

Reduced antibody activity against SARS-CoV-2 B.1.617.2 delta virus in serum of mRNA-vaccinated individuals receiving tumor necrosis factor-α inhibitors

Med(2021)10.1016/j.medj.2021.11.004

N/A

0DataRank · unranked

36 citations

Matthew J. Gorman, Daniel Y. Zhu, Juan Manuel Carreño, Dansu Yuan, Laura A. VanBlargan +18 more

The dark side of the gut: Virome–host interactions in intestinal homeostasis and disease

The Journal of Experimental Medicine(2021)10.1084/jem.20201044

N/A

0DataRank · unranked

49 citations

Scott A. Handley, Megan T. Baldridge, Yuhao Li

Broadly neutralizing monoclonal antibodies protect against multiple tick-borne flaviviruses

The Journal of Experimental Medicine(2021)10.1084/jem.20210174

N/A

0DataRank · unranked

32 citations

John M. Errico, Natasha M. Kafai, Katherine E. Burgomaster, Prashant N. Jethva, Rebecca M. Broeckel +11 more

Antigen Presenting Cells Link the Female Genital Tract Microbiome to Mucosal Inflammation, With Hormonal Contraception as an Additional Modulator of Inflammatory Signatures

Frontiers in Cellular and Infection Microbiology(2021)10.3389/fcimb.2021.733619

N/A

0DataRank · unranked

25 citations

M Fărcăşanu, Seth M. Bloom, Nondumiso Xulu, Jiawu Xu, Barry L. Hykes +15 more

Implications of a highly divergent dengue virus strain for cross-neutralization, protection, and vaccine immunity

Cell Host & Microbe(2021)10.1016/j.chom.2021.09.006

N/A

0DataRank · unranked

16 citations

Brittany Smith, John M. Errico, David Gordon, Emma S. Winkler, Laura A. VanBlargan +14 more

A potently neutralizing anti-SARS-CoV-2 antibody inhibits variants of concern by binding a highly conserved epitope

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441501

N/A

0DataRank · unranked

16 citations

Lucas J. Adams, Zhuoming Liu, Rita E. Chen, Pavlo Gilchuk, Saravanan Raju +18 more

Reduced antibody activity against SARS-CoV-2 B.1.617.2 Delta virus in serum of mRNA-vaccinated patients receiving TNF-α inhibitors

medRxiv(2021)10.1101/2021.09.28.21264250

N/A

0DataRank · unranked

2 citations

Matthew J. Gorman, Daniel Y. Zhu, Juan Manuel Carreño, Dansu Yuan, Laura A. VanBlargan +18 more

Divergent Enteroviruses from Macaques with Chronic Diarrhea

Microbiology Resource Announcements(2021)10.1128/mra.00699-21

N/A

0DataRank · unranked

0 citations

Lindsay Droit, Margaret Gilbert, Peter J. Didier, Anne Paredes, Scott A. Handley +3 more

Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains

Nature Communications(2022)10.1038/s41467-022-31615-7

N/A

0DataRank · unranked

154 citations

Samantha Mackin, John M. Errico, Zhenlu Chong, Emily A. Madden, Bradley Whitener +20 more

Ten simple rules and a template for creating workflows-as-applications

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010705

N/A

0DataRank · unranked

29 citations

N. Tessa Pierce‐Ward, Radosław Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A. Handley +4 more

Neutralizing antibodies protect mice against Venezuelan equine encephalitis virus aerosol challenge

The Journal of Experimental Medicine(2022)10.1084/jem.20212532

N/A

0DataRank · unranked

26 citations

Lauren E. Williamson, Elad Binshtein, Soila Sukupolvi-Petty, Christina L. Gardner, Jaclyn Liu +12 more

Single-cell genomics for resolution of conserved bacterial genes and mobile genetic elements of the human intestinal microbiota using flow cytometry

Gut Microbes(2022)10.1080/19490976.2022.2029673

N/A

0DataRank · unranked

19 citations

Danielle E. Campbell, Lawrence A. Schriefer, Rachel Rodgers, Forrest C. Walker, Marissa Turkin +5 more

Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.17.484787

N/A

0DataRank · unranked

37 citations

Samantha Mackin, John M. Errico, Zhenlu Chong, Emily A. Madden, Barbara Guarino +17 more

Hecatomb: An End-to-End Research Platform for Viral Metagenomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.15.492003

N/A

0DataRank · unranked

13 citations

Sarah J. Beecroft, Kathie A. Mihindukulasuriya, Leran Wang, Anne Paredes, Kara Henry-Cocks +5 more

The highly conserved stem-loop II motif is important for the lifecycle of astroviruses but dispensable for SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.30.486882

N/A

0DataRank · unranked

3 citations

Hongbing Jiang, Chika Fujii, Macee C. Owen, Traci L. Bricker, Tamarand L. Darling +12 more

ApoE isoform– and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy

Science(2023)10.1126/science.add1236

N/A

0DataRank · unranked

247 citations

David O’Donnell, Nimansha Jain, Jason D. Ulrich, Jasmin Herz, Yuhao Li +18 more

Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2

Microbial Genomics(2023)10.1099/mgen.0.001100

N/A

0DataRank · unranked

16 citations

Alejandro A. Vega, Cole Souza, Sarah K. Giles, Vijini Mallawaarachchi, Michael J. Roach +20 more

The Highly Conserved Stem-Loop II Motif Is Dispensable for SARS-CoV-2

Journal of Virology(2023)10.1128/jvi.00635-23

N/A

0DataRank · unranked

11 citations

Astha Joshi, Tianyu Gan, Andrew B. Janowski, Chika Fujii, Traci L. Bricker +13 more

Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.05.531146

N/A

0DataRank · unranked

1 citations

Alejandro A. Vega, Cole Souza, Sarah K. Giles, Vijini Mallawaarachchi, Michael J. Roach +20 more

The highly conserved stem-loop II motif is dispensable for SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.15.532878

N/A

0DataRank · unranked

1 citations

Astha Joshi, Tianyu Gan, Andrew B. Janowski, Chika Fujii, Traci L. Bricker +13 more

Hecatomb: an integrated software platform for viral metagenomics

GigaScience(2024)10.1093/gigascience/giae020

N/A

0DataRank · unranked

16 citations

Sarah J. Beecroft, Kathie A. Mihindukulasuriya, Leran Wang, Anne Paredes, Luis Alberto Chica Cárdenas +6 more

Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua

The Journal of Experimental Medicine(2024)10.1084/jem.20240694

N/A

0DataRank · unranked

10 citations

Leran Wang, Reyan Coskun, Stéfanie Primon Muraro, Fang Zhao, Michelle Elam-Noll +7 more

Dengue virus surveillance in Nepal yields the first on-site whole genome sequences of isolates from the 2022 outbreak

BMC Genomics(2024)10.1186/s12864-024-10879-x

N/A

0DataRank · unranked

10 citations

Annie Elong Ngono, Kathie A. Mihindukulasuriya, Aunji Pradhan, Binod Khadka, Smita Shrestha +13 more

Genomic surveillance of SARS-CoV-2 in Nepal

Microbiology Resource Announcements(2024)10.1128/mra.00789-24

Top 100%

0DataRank

Top 100%0 citations

Rajindra Napit, Kathie A. Mihindukulasuriya, Smita Shrestha, Ramanuj Rauniyar, Eans Tara Tuladhar +11 more

Single cell viral tagging of Faecalibacterium prausnitzii reveals rare bacteriophages omitted by other techniques

Gut Microbes(2025)10.1080/19490976.2025.2526719

N/A

0DataRank · unranked

5 citations

Xiaofen Wu, Lindsey R. Hall, Dylan Lawrence, Jerome M. Molleston, Lawrence A. Schriefer +8 more

Intercellular Mitochondria Transfer to Macrophages Regulates White Adipose Tissue Homeostasis and Is Impaired in Obesity

Cell Metabolism(2020)10.1016/j.cmet.2020.11.008

N/A

0DataRank · unranked

394 citations

Craig B. Wilen, John R. Moley, Yongjia Li, Wei Zou, Nicole P. Malvin +20 more

An Evolutionary Insertion in the Mxra8 Receptor-Binding Site Confers Resistance to Alphavirus Infection and Pathogenesis

Cell Host & Microbe(2020)10.1016/j.chom.2020.01.008

N/A

0DataRank · unranked

52 citations

Ofer Zimmerman, Julie M. Fox, Christopher A. Nelson, Katherine Basore, Rong Zhang +14 more

Sex effects in the association between airway microbiome and asthma

Annals of Allergy Asthma & Immunology(2020)10.1016/j.anai.2020.09.007

N/A

0DataRank · unranked

16 citations

Leran Wang, Tammy Koch, Vanessa Curtis, Huiqing Yin‐Declue, Scott A. Handley +5 more

Growth velocity in children with Environmental Enteric Dysfunction is associated with specific bacterial and viral taxa of the gastrointestinal tract in Malawian children

PLoS neglected tropical diseases(2020)10.1371/journal.pntd.0008387

N/A

0DataRank · unranked

29 citations

Scott A. Handley, Rachel Rodgers, Cynthia Rodríguez, M. Isabel Ordiz, Mark Manary +2 more

In vivo monoclonal antibody efficacy against SARS-CoV-2 variant strains

Nature(2021)10.1038/s41586-021-03720-y

N/A

0DataRank · unranked

262 citations

Emma S. Winkler, James Brett Case, Ishmael D. Aziati, Traci L. Bricker, Astha Joshi +29 more

Scott A. Handley

Indexed papers

Top data-sharing exemplar

Papers