Justin T Reese

Also affiliated with Biomedical Research Networking Center on Neurodegenerative Diseases

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.3Author DataRank

Indexed papers

10in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.16901

Top 3%

6.6DataRank

Top 3%250 citations

Richard A. Moffitt, Janos Hajagos, Benjamin Amor, Adit Anand, Mark M. Bissell +95 more

Papers

Driven by 52 papers — median percentile 77. Top paper: “Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative”.

Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.16901

Top 3%

6.6DataRank

Top 3%250 citations

Richard A. Moffitt, Janos Hajagos, Benjamin Amor, Adit Anand, Mark M. Bissell +95 more

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Patterns(2020)10.1016/j.patter.2020.100155

Top 7%

3.3DataRank

Top 7%95 citations

Deepak R Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon +13 more

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Nucleic Acids Research(2023)10.1093/nar/gkad1082

Top 14%

1.5DataRank

Top 14%106 citations

Kevin Schaper, Nicolas A Matentzoglu, Vincent Rubinetti, Faisal Alquaddoomi, Corey Cox +39 more

An open source knowledge graph ecosystem for the life sciences

Scientific Data(2024)10.1038/s41597-024-03171-w

Top 15%

1.4DataRank

Top 15%63 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome

BMC Genomics(2010)10.1186/1471-2164-11-645

Top 15%

1.4DataRank

Top 15%26 citations

Christopher P Childers, Jaideep P Sundaram, C Michael Dickens, Kevin L Childs, Donald C Vile +2 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

eBioMedicine(2021)10.1016/j.ebiom.2021.103722

N/A

0.802DataRank · unranked

209 citations

Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone, Marc D. Basson +53 more

Metformin is associated with reduced COVID-19 severity in patients with prediabetes

Diabetes Research and Clinical Practice(2022)10.1016/j.diabres.2022.110157

Top 30%

0.662DataRank

Top 30%21 citations

Elena Casiraghi, Bryan Laraway, Ben D Coleman, Hannah Blau, Adnin Zaman +11 more

Phenopacket-tools: Building and validating GA4GH Phenopackets

PLoS ONE(2023)10.1371/journal.pone.0285433

Top 36%

0.534DataRank

Top 36%12 citations

Julius O.B. Jacobsen, Alex H. Wagner, Tudor Groza, Martha A. Beckwith, Lauren Rekerle +13 more

A corpus of GA4GH phenopackets: Case-level phenotyping for genomic diagnostics and discovery

Human Genetics and Genomics Advances(2024)10.1016/j.xhgg.2024.100371

Top 39%

0.489DataRank

Top 39%12 citations

Michael J Bamshad, Yasemin Bridges, Andrés Caballero-Oteyza, Pilar Cacheiro, Leigh C Carmody +30 more

Announcing the Biomedical Data Translator: Initial Public Release

Clinical and Translational Science(2025)10.1111/cts.70284

N/A

0.397DataRank · unranked

9 citations

Gustavo Glusman, Sergio E. Baranzini, Chris Bizon, Matthew Brush, William E. Byrd +37 more

A corpus of GA4GH Phenopackets: case-level phenotyping for genomic diagnostics and discovery

medRxiv(2024)10.1101/2024.05.29.24308104

Top 51%

0.345DataRank

Top 51%9 citations

Michael J Bamshad, Yasemin Bridges, Pilar Cacheiro, Leigh C Carmody, Jessica X. Chong +27 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

medRxiv(2021)10.1101/2021.06.23.21259416

N/A

0.165DataRank · unranked

2 citations

Madeline A Rock, Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone +53 more

An Open-Source Knowledge Graph Ecosystem for the Life Sciences

Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)(2023)10.48550/arxiv.2307.05727

Top 78%

0.104DataRank

Top 78%1 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

Metformin is Associated with Reduced COVID-19 Severity in Patients with Prediabetes

medRxiv(2022)10.1101/2022.08.29.22279355

N/A

0DataRank · unranked

1 citations

Elena Casiraghi, Bryan Laraway, Ben D Coleman, Hannah Blau, Adnin Zaman +10 more

Node-degree aware edge sampling mitigates inflated classification performance in biomedical graph representation learning

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517376

N/A

0DataRank · unranked

1 citations

Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr +12 more

Predictive models of long COVID

EBioMedicine(2023)10.1016/j.ebiom.2023.104777

N/A

0DataRank · unranked

37 citations

Hannah Blau, Elena Casiraghi, Johanna J. Loomba, Tiffany J. Callahan, Bryan Laraway +9 more

KG-Hub—building and exchanging biological knowledge graphs

Bioinformatics(2023)10.1093/bioinformatics/btad418

N/A

0DataRank · unranked

35 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

GRAPE for fast and scalable graph processing and random-walk-based embedding

Nature Computational Science(2023)10.1038/s43588-023-00465-8

N/A

0DataRank · unranked

32 citations

Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Carlos Cano +6 more

A method for comparing multiple imputation techniques: A case study on the U.S. national COVID cohort collaborative

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104295

N/A

0DataRank · unranked

23 citations

Rachel Wong, Margaret Hall, Ben D Coleman, Marco Notaro, Michael D. Evans +18 more

Ontologizing health systems data at scale: making translational discovery a reality

npj Digital Medicine(2023)10.1038/s41746-023-00830-x

N/A

0DataRank · unranked

21 citations

Adrianne L. Stefanski, Jordan M Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda +27 more

Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests

medRxiv(2023)10.1101/2023.07.14.23292679

N/A

0DataRank · unranked

1 citations

Elena Casiraghi, Tim Putman, Justin T Reese, Quaker E. Harmon, Kevin Schaper +9 more

An evaluation of GPT models for phenotype concept recognition

arXiv (Cornell University)(2023)10.48550/arxiv.2309.17169

N/A

0DataRank · unranked

1 citations

Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A Haendel, Peter N. Robinson +3 more

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

arXiv (Cornell University)(2023)10.48550/arxiv.2302.10800

N/A

0DataRank · unranked

0 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

Bioinformatics(2024)10.1093/bioinformatics/btae104

N/A

0DataRank · unranked

105 citations

Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas A Matentzoglu +7 more

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Journal of Biomedical Semantics(2024)10.1186/s13326-024-00320-3

N/A

0DataRank · unranked

47 citations

Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh C Carmody +25 more

An evaluation of GPT models for phenotype concept recognition

BMC Medical Informatics and Decision Making(2024)10.1186/s12911-024-02439-w

N/A

0DataRank · unranked

37 citations

Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A Haendel, Peter N. Robinson +3 more

Leveraging generative AI to assist biocuration of medical actions for rare disease

Bioinformatics Advances(2024)10.1093/bioadv/vbaf141

N/A

0DataRank · unranked

3 citations

J. Harry Caufield, Leigh C Carmody, Michael Gargano, Sabrina Toro, Patricia L. Whetzel +10 more

Node-degree aware edge sampling mitigates inflated classification performance in biomedical random walk-based graph representation learning

Bioinformatics Advances(2024)10.1093/bioadv/vbae036

N/A

0DataRank · unranked

8 citations

Lauren Rekerle, Tommaso Fontana, Peter Hansen, Elena Casiraghi, Vida Ravanmehr +12 more

Association of post-COVID phenotypic manifestations with new-onset psychiatric disease

Translational Psychiatry(2024)10.1038/s41398-024-02967-z

N/A

0DataRank · unranked

5 citations

Elena Casiraghi, Tiffany J. Callahan, Hannah Blau, Lauren E Chan, Bryan Laraway +10 more

Predicting nutrition and environmental factors associated with female reproductive disorders using a knowledge graph and random forests

International Journal of Medical Informatics(2024)10.1016/j.ijmedinf.2024.105461

N/A

0DataRank · unranked

5 citations

Elena Casiraghi, Justin T Reese, Quaker E. Harmon, Kevin Schaper, Harshad Hegde +8 more

Systematic benchmarking demonstrates large language models have not reached the diagnostic accuracy of traditional rare-disease decision support tools

medRxiv(2024)10.1101/2024.07.22.24310816

N/A

0DataRank · unranked

9 citations

Leonardo Chimirri, Yasemin Bridges, Daniel Daniš, J. Harry Caufield, Michael Gargano +16 more

CurateGPT: A flexible language-model assisted biocuration tool

arXiv (Cornell University)(2024)10.48550/arxiv.2411.00046

N/A

0DataRank · unranked

8 citations

Carlo Kroll, Shawn T. O’Neil, Justin T Reese, Marcin P. Joachimiak, Harshad Hegde +8 more

Leveraging Generative AI to Accelerate Biocuration of Medical Actions for Rare Disease

medRxiv(2024)10.1101/2024.08.22.24310814

N/A

0DataRank · unranked

3 citations

J. Harry Caufield, Leigh C Carmody, Michael Gargano, Sabrina Toro, Trish Whetzel +10 more

Replacing non-biomedical concepts improves embedding of biomedical concepts

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.01.601556

N/A

0DataRank · unranked

0 citations

Mauricio Soto, Elena Casiraghi, Stephan Antogiovanni, Hannah Blau, Justin T Reese +3 more

Consistent performance of large language models in rare disease diagnosis across ten languages and 4917 cases

EBioMedicine(2025)10.1016/j.ebiom.2025.105957

N/A

0DataRank · unranked

8 citations

J. Harry Caufield, Yasemin Bridges, Nicolas A Matentzoglu, Michael Gargano, Mario Cazalla +25 more

LinkML: an open data modeling framework

GigaScience(2025)10.1093/gigascience/giaf152

N/A

0DataRank · unranked

4 citations

Harold R. Solbrig, Nomi L. Harris, Patrick Kalita, Mark A. Miller, Sagar Patil +63 more

Replacing non-biomedical concepts improves embedding of biomedical concepts

PLoS ONE(2025)10.1371/journal.pone.0322498

N/A

0DataRank · unranked

0 citations

Mauricio Soto, Elena Casiraghi, Stephan Antogiovanni, Hannah Blau, Justin T Reese +3 more

Oncopacket: integration of cancer research data using GA4GH phenopackets

Bioinformatics(2025)10.1093/bioinformatics/btaf546

N/A

0DataRank · unranked

0 citations

Daniel Danis, Sagar Patil, Nobal Kishor, Rajdeep Mondal, Abhishek Jha +7 more

Announcing the Biomedical Data Translator: Initial Public Release

UNC Libraries(2025)10.17615/9as8-h722

N/A

0DataRank · unranked

0 citations

Gustavo Glusman, Sergio E. Baranzini, Chris Bizon, Matthew Brush, William E. Byrd +37 more

Performance of Information Theory Derived Semantic Similarity Algorithms for Differential Diagnosis and Clustering

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.17.688933

N/A

0DataRank · unranked

0 citations

Daniel Daniš, Justin T Reese, Peter N. Robinson, Ben D Coleman

Interpretable Clinical Genomics with a Likelihood Ratio Paradigm

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.06.021

N/A

0DataRank · unranked

113 citations

Vida Ravanmehr, Julius O.B. Jacobsen, Daniel Daniš, Xingmin Aaron Zhang, Leigh C Carmody +10 more

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab113

N/A

0DataRank · unranked

7 citations

Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh C Carmody, Ben D Coleman +13 more

Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information

medRxiv(2021)10.1101/2021.03.20.21253896

N/A

0DataRank · unranked

142 citations

Tellen D. Bennett, James Brian Byrd, Carolyn T. Bramante, Tiffany J. Callahan, Christopher G. Chute +17 more

NSAID use and clinical outcomes in COVID-19 patients: A 38-center retrospective cohort study

medRxiv(2021)10.1101/2021.04.13.21255438

N/A

0DataRank · unranked

18 citations

Ben D Coleman, Lauren E Chan, Hannah Blau, Tiffany J. Callahan, Luca Cappelletti +18 more

SvAnna: efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.14.452267

N/A

0DataRank · unranked

2 citations

Julius O.B. Jacobsen, Parithi Balachandran, Qihui Zhu, Feyza Yilmaz, Justin T Reese +9 more

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.11.447943

N/A

0DataRank · unranked

1 citations

Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh C Carmody, Ben D Coleman +12 more

Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes

EBioMedicine(2022)10.1016/j.ebiom.2022.104413

N/A

0DataRank · unranked

180 citations

Hannah Blau, Elena Casiraghi, Timothy Bergquist, Johanna J. Loomba, Tiffany J. Callahan +39 more

Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease

Human Mutation(2022)10.1002/humu.24380

N/A

0DataRank · unranked

75 citations

Catherine Kelly, Valentina Cipriani, Christopher J. Mungall, Justin T Reese, Daniel Daniš +3 more

SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing

Genome Medicine(2022)10.1186/s13073-022-01046-6

N/A

0DataRank · unranked

42 citations

Julius O.B. Jacobsen, Parithi Balachandran, Qihui Zhu, Feyza Yilmaz, Justin T Reese +9 more

NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study

Virology Journal(2022)10.1186/s12985-022-01813-2

N/A

0DataRank · unranked

31 citations

Ben D Coleman, Lauren E Chan, Hannah Blau, Tiffany J. Callahan, Luca Cappelletti +18 more

Generalizable Long COVID Subtypes: Findings from the NIH N3C and RECOVER Programs

medRxiv(2022)10.1101/2022.05.24.22275398

N/A

0DataRank · unranked

32 citations

Hannah Blau, Timothy Bergquist, Johanna J. Loomba, Tiffany J. Callahan, Bryan Laraway +25 more

GraPE: fast and scalable Graph Processing and Embedding

Research Square(2022)10.21203/rs.3.rs-967145/v1

N/A

0DataRank · unranked

5 citations

Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Marcin P. Joachimiak +5 more

Justin T Reese

Indexed papers

Top data-sharing exemplar

Papers