S. Cenk Şahinalp

Also affiliated with National Cancer Institute, National Cancer Institute

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

10.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Papers

Driven by 20 papers — median percentile 96. Top paper: “Pan-cancer analysis of whole genomes”.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer

Cell Reports Medicine(2020)10.1016/j.xcrm.2020.100007

N/A

5.6DataRank · unranked

182 citations

Anna‐Leigh Brown, Jun S. Wei, Svetlana Pack, Christopher Trindade, Chul Kim +26 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Fast intratumor heterogeneity inference from single-cell sequencing data

Nature Computational Science(2022)10.1038/s43588-022-00298-x

N/A

0.607DataRank · unranked

14 citations

Farid Rashidi Mehrabadi, Erfan Sadeqi Azer, Eva Pérez‐Guijarro, Kerrie L. Marie, Maxwell P. Lee +7 more

CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2021.12.011

N/A

0.581DataRank · unranked

47 citations

Erin C. Boone, Steven E. Scherer, Seung‐been Lee, Ibrahim Numanagić, S. Cenk Şahinalp +13 more

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Nature Biotechnology(2025)10.1038/s41587-025-02618-8

N/A

0.505DataRank · unranked

28 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +36 more

Analytical Validation of a Computational Method for Pharmacogenetic Genotyping from Clinical Whole Exome Sequencing

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.03.008

N/A

0.434DataRank · unranked

17 citations

Tyler Shugg, Ryan Ratcliff, Wilberforce Osei, Ty C. Lynnes, Victoria M. Pratt +9 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Secure phasing of private genomes in a trusted execution environment with TX-Phase

Genome Research(2025)10.1101/gr.280558.125

N/A

0.104DataRank · unranked

1 citations

Kaiyuan Zhu, S. Cenk Şahinalp, Hyunghoon Cho, Natnatee Dokmai

Proteogenomic analysis unveils the HLA Class I presented immunopeptidome in melanoma and EGFR mutant lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.04.236331

N/A

0DataRank · unranked

3 citations

Tapan K. Maity, Constance M. Cultraro, Vikram Misra, Xu Zhang, Catherine M. Ade +10 more

scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.14.096230

N/A

0DataRank · unranked

5 citations

Joshua K. Stone, Fiorella Schischlik, Billel Gasmi, Michael C. Kelly, Charlie Seibert +13 more

ImmunoTyper-SR: A computational approach for genotyping immunoglobulin heavy chain variable genes using short-read data

Cell Systems(2022)10.1016/j.cels.2022.08.008

N/A

0DataRank · unranked

13 citations

Ananth Hari, Oscar L. Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz +28 more

Genotyping and Copy Number Analysis of Immunoglobin Heavy Chain Variable Genes Using Long Reads

iScience(2020)10.1016/j.isci.2020.100883

N/A

0DataRank · unranked

26 citations

Ehsan Haghshenas, Corey T. Watson, S. Cenk Şahinalp, Michael Ford

Strain level microbial detection and quantification with applications to single cell metagenomics

Nature Communications(2022)10.1038/s41467-022-33869-7

N/A

0DataRank · unranked

14 citations

Alejandro A. Schäffer, Welles Robinson, Junyan Xu, Eytan Ruppin, A. Funda Ergun +3 more

ImmunoTyper-SR: A Novel Computational Approach for Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.31.478564

N/A

0DataRank · unranked

1 citations

Ananth Hari, Oscar L. Rodriguez, Junyan Xu, Justin Lack, Cihan Oguz +19 more

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads

medRxiv(2024)10.1101/2024.03.22.24304756

N/A

0DataRank · unranked

21 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +33 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

Characterization of MAIT cells in glioblastoma reveals a potential immunosuppressive role through a MAIT-neutrophil axis

Neuro-Oncology Advances(2025)10.1093/noajnl/vdaf173

N/A

0DataRank · unranked

3 citations

Taijun Hana, Alexander Lee, Noémi Kedei, Nargis Malik, Hye Min Kim +16 more

Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100136

N/A

0DataRank · unranked

34 citations

Tapan K. Maity, Constance M. Cultraro, Vikram Misra, Xu Zhang, Catherine M. Ade +10 more

Wakhan: reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing

medRxiv(2025)10.64898/2025.12.11.25342098

N/A

0DataRank · unranked

0 citations

Ayse G. Keskus, Sergey Aganezov, Anton Goretsky, Isabel Rodriguez, Byunggil Yoo +23 more

S. Cenk Şahinalp

Indexed papers

Top data-sharing exemplar

Papers