Alan K. Jarmusch

Also affiliated with National Institute of Environmental Health Sciences

Biochemistry, Genetics and Molecular BiologyChemistryEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.2Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

Nature Communications(2023)10.1038/s41467-023-44035-y

Top 15%

1.4DataRank

Top 15%82 citations

Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender Portal Gomes +27 more

Papers

Driven by 47 papers — median percentile 67. Top paper: “Feature-based molecular networking in the GNPS analysis environment”.

Feature-based molecular networking in the GNPS analysis environment

Nature Methods(2020)10.1038/s41592-020-0933-6

N/A

10.9DataRank · unranked

1581 citations

Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli +57 more

Reproducible molecular networking of untargeted mass spectrometry data using GNPS

Nature Protocols(2020)10.1038/s41596-020-0317-5

N/A

10.3DataRank · unranked

718 citations

Emily C. Gentry, Kerry L. McPhail, Louis‐Félix Nothias, Mélissa Nothias-Esposito, Amina Bouslimani +37 more

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

Nature Communications(2021)10.1038/s41467-021-23953-9

N/A

6.7DataRank · unranked

328 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

Mass spectrometry searches using MASST

Nature Biotechnology(2020)10.1038/s41587-019-0375-9

N/A

6.2DataRank · unranked

298 citations

Alan K. Jarmusch, Fernando Vargas, Alexander A. Aksenov, Julia M. Gauglitz, Kelly C. Weldon +31 more

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

Nature Methods(2021)10.1038/s41592-021-01339-5

N/A

2.1DataRank · unranked

96 citations

Vanessa V. Phelan, Deepa Acharya, Andrew E. Allen, Allegra T. Aron, Nuno Bandeira +30 more

Enhancing untargeted metabolomics using metadata-based source annotation

Nature Biotechnology(2022)10.1038/s41587-022-01368-1

N/A

2.0DataRank · unranked

79 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +68 more

Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

Nature Communications(2023)10.1038/s41467-023-44035-y

Top 15%

1.4DataRank

Top 15%82 citations

Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender Portal Gomes +27 more

GNPS Dashboard: Collaborative Analysis of Mass Spectrometry Data in the Web Browser

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438475

N/A

0.688DataRank · unranked

13 citations

Vanessa V. Phelan, Deepa Acharya, Andrew E. Allen, Allegra T. Aron, Nuno Bandeira +30 more

Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection

Immunity(2023)10.1016/j.immuni.2023.07.014

N/A

0.606DataRank · unranked

56 citations

Nicolas S. Merle, Marcin M. Kamiński, Gustavo Palacios, Dhaneshwar Kumar, Luopin Wang +19 more

Open Access Repository-Scale Propagated Nearest Neighbor Suspect Spectral Library for Untargeted Metabolomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.15.490691

Top 33%

0.597DataRank

Top 33%28 citations

Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov, Alexander A. Aksenov, Paulo Wender Portal Gomes +27 more

Systemic and gut microbiome changes with metformin and liraglutide in youth-onset type 2 diabetes: the MIGHTY study

Gut Microbes(2025)10.1080/19490976.2025.2558071

N/A

0.487DataRank · unranked

13 citations

Sidharth P. Mishra, Shalini Jain, Faith Davis, Scott A. Gabel, Geoffrey A. Mueller +9 more

Ion Identity Molecular Networking in the GNPS Environment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.088948

N/A

0.477DataRank · unranked

23 citations

Daniel Petras, Louis‐Félix Nothias, Mingxun Wang, Allegra T. Aron, Annika Jagels +40 more

A Synthesis-Based Reverse Metabolomics Approach for the Discovery of Chemical Structures from Humans and Animals.

Research Square(2021)10.21203/rs.3.rs-820302/v1

N/A

0.464DataRank · unranked

21 citations

Emily C. Gentry, Stephanie L. Collins, Morgan Panitchpakdi, Pedro Belda‐Ferre, Allison K. Stewart +14 more

Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis

Clinical and Translational Medicine(2022)10.1002/ctm2.959

N/A

0.385DataRank · unranked

12 citations

Cameron Martino, Julia M. Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K. Jarmusch +15 more

Reference data based insights expand understanding of human metabolomes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.08.194159

N/A

0.360DataRank · unranked

10 citations

Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi, Francesca Di Ottavio +59 more

Physicochemical properties determining drug detection in skin

Clinical and Translational Science(2021)10.1111/cts.13198

N/A

0.345DataRank · unranked

9 citations

Rohit S. Advani, Alan K. Jarmusch, Shaden Aguirre, Aileen Lu, Pieter C. Dorrestein +2 more

A resource to empirically establish drug exposure records directly from untargeted metabolomics data

Nature Communications(2025)10.1038/s41467-025-65993-5

Top 65%

0.208DataRank

Top 65%3 citations

Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron‐Lamoureux, Wout Bittremieux +54 more

Profiling whole-tissue metabolic reprogramming during cutaneous poxvirus infection and clearance

Journal of Virology(2023)10.1128/jvi.01272-23

N/A

0DataRank · unranked

2 citations

Kirsten E. Overdahl, John P. Shannon, Katherine M. Hornick, Alan K. Jarmusch, Heather D. Hickman +1 more

GLIS3: A novel transcriptional regulator of mitochondrial functions and metabolic reprogramming in postnatal kidney and polycystic kidney disease

Molecular Metabolism(2024)10.1016/j.molmet.2024.102052

N/A

0DataRank · unranked

9 citations

Hong Soon Kang, Yun-Gil Roh, Chitrangda Srivastava, Sara A. Grimm, Alan K. Jarmusch +2 more

Multi-omics inhalation toxicity assessment of urban soil dusts contaminated by multiple legacy sources of lead (Pb)

Journal of Hazardous Materials(2024)10.1016/j.jhazmat.2024.136120

N/A

0DataRank · unranked

7 citations

Andrea Adamcakova‐Dodd, Xuefang Jing, Hui Wang, Alan K. Jarmusch, Peter S. Thorne +1 more

Characterization of spironolactone and metabolites derivatized using Girard's reagent P using mass spectrometry and ion mobility spectrometry

Rapid Communications in Mass Spectrometry(2024)10.1002/rcm.9775

N/A

0DataRank · unranked

4 citations

Kaylie I. Kirkwood‐Donelson, Georgia M. Alexander, L. Perera, Serena M. Dudek, Alan K. Jarmusch +1 more

Prenatal exposure to the mineralocorticoid receptor antagonist spironolactone disrupts hippocampal area CA2 connectivity and alters behavior in mice

Neuropsychopharmacology(2024)10.1038/s41386-024-01971-7

N/A

0DataRank · unranked

1 citations

Sarah Jo Sleiman, Katharine E McCann, Alan K. Jarmusch, Georgia M. Alexander, Serena M. Dudek +1 more

A universal language for finding mass spectrometry data patterns

Nature Methods(2025)10.1038/s41592-025-02660-z

N/A

0DataRank · unranked

49 citations

Alan K. Jarmusch, Allegra T. Aron, Daniel Petras, Vanessa V. Phelan, Haoqi Nina Zhao +69 more

Multilaboratory Untargeted Mass Spectrometry Metabolomics Collaboration to Identify Bottlenecks and Comprehensively Annotate A Single Dataset

Analytical Chemistry(2025)10.1021/acs.analchem.4c05577

N/A

0DataRank · unranked

8 citations

Preston K. Manwill, Armando Alcázar Magaña, Victoria M. Anderson, Mehdi A. Beniddir, Samuel Bertrand +19 more

Metabolic consequences of erastin-induced ferroptosis in human ovarian cancer cells: an untargeted metabolomics study

Frontiers in Molecular Biosciences(2025)10.3389/fmolb.2024.1520876

N/A

0DataRank · unranked

11 citations

Alan K. Jarmusch, Carl D. Bortner, B. Alex Merrick, Birandra K. Sinha, Kaylie I. Kirkwood‐Donelson

Bromine-Based Derivatization of Carboxyl-Containing Metabolites for Liquid Chromatography–Trapped Ion Mobility Spectrometry–Mass Spectrometry

Journal of the American Society for Mass Spectrometry(2025)10.1021/jasms.5c00023

N/A

0DataRank · unranked

2 citations

Prashant Rai, L. Perera, Michael B. Fessler, Alan K. Jarmusch, Kaylie I. Kirkwood‐Donelson

Open-source System Suitability: Mass Spectrometry Query Language Lab (MassQLab)

(2025)10.22541/au.174344954.49264250/v1

N/A

0DataRank · unranked

0 citations

Dylan Johnson, Alan K. Jarmusch, Heather Winter

Protocol for constructing correlation-based molecular networks from large-scale untargeted metabolomics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.26.649581

N/A

0DataRank · unranked

0 citations

Lijun Zhang, Ali Lotfi, Alan K. Jarmusch, Iris Lee, Adam Kim +3 more

Neurobehavioral and metabolic effects of prenatal low-dose chlorpyrifos in C57BL/6J mice

NeuroToxicology(2025)10.1016/j.neuro.2025.08.001

N/A

0DataRank · unranked

0 citations

Jariatu Stallone, DaNashia S. Thomas, Leslie R Aksu, Kaylie I. Kirkwood‐Donelson, Alan K. Jarmusch +3 more

Open‐Source System Suitability: Mass Spectrometry Query Language Lab (MassQLab)

Rapid Communications in Mass Spectrometry(2025)10.1002/rcm.10132

N/A

0DataRank · unranked

0 citations

Dylan Johnson, Alan K. Jarmusch, Heather Winter

A taxon-specific measurement of disruption in a multi-modal study of microbiomes and metabolomes reveals system-wide dysbiosis preceding HIV-1 infection

Nature Communications(2025)10.1038/s41467-025-64822-z

N/A

0DataRank · unranked

0 citations

Yue Chen, S Bera, Alan K. Jarmusch, Daria Van Tyne, Frank J. Palella +7 more

ReDU: a framework to find and reanalyze public mass spectrometry data

Nature Methods(2020)10.1038/s41592-020-0916-7

N/A

0DataRank · unranked

141 citations

Mingxun Wang, Christine M. Aceves, Rohit S. Advani, Shaden Aguirre, Alexander A. Aksenov +39 more

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic

mSystems(2020)10.1128/msystems.00340-20

N/A

0DataRank · unranked

14 citations

Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn +6 more

Enhanced Characterization of Drug Metabolism and the Influence of the Intestinal Microbiome: A Pharmacokinetic, Microbiome, and Untargeted Metabolomics Study

Clinical and Translational Science(2020)10.1111/cts.12785

N/A

0DataRank · unranked

40 citations

Alison Vrbanac, Jeremiah D. Momper, D. Joseph, Maher Alhaja, Marlon Liyanage +4 more

Mammalian ovarian lipid distributions by desorption electrospray ionization–mass spectrometry (DESI-MS) imaging

Analytical and Bioanalytical Chemistry(2020)10.1007/s00216-019-02352-6

N/A

0DataRank · unranked

30 citations

Alan K. Jarmusch, Marisol León, Christina R. Ferreira, Valentina Pirro, Lívia S. Eberlin +4 more

Advancements in capturing and mining mass spectrometry data are transforming natural products research

Natural Product Reports(2021)10.1039/d1np00040c

N/A

0DataRank · unranked

72 citations

Justin J. J. van der Hooft, Pieter C. Dorrestein, Alan K. Jarmusch, Scott A. Jarmusch

Chemical Proportionality within Molecular Networks

Analytical Chemistry(2021)10.1021/acs.analchem.1c01520

N/A

0DataRank · unranked

36 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

Non-Invasive Skin Sampling Detects Systemically Administered Drugs in Humans

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.22.469638

N/A

0DataRank · unranked

4 citations

Kelly C. Weldon, Alan K. Jarmusch, Emily C. Gentry, Arianna Choi, Yadira Sepulveda +6 more

Physicochemical and Pharmacokinetic Properties Determining Drug Detection in Skin

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456720

N/A

0DataRank · unranked

1 citations

Rohit S. Advani, Alan K. Jarmusch, Shaden Aguirre, Aileen Lu, Pieter C. Dorrestein +2 more

Chemical Proportionality within Molecular Networks

ChemRxiv(2021)10.26434/chemrxiv.14396105.v1

N/A

0DataRank · unranked

1 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

Reference data-set driven metabolomics

Research Square(2021)10.21203/rs.3.rs-654519/v1

N/A

0DataRank · unranked

0 citations

Kiana West, Wout Bittremieux, Candace L. Williams, Kelly C. Weldon, Morgan Panitchpakdi +69 more

Chemical Proportionality within Molecular Networks

ChemRxiv(2021)10.26434/chemrxiv.14396105

N/A

0DataRank · unranked

0 citations

Andrés Mauricio Caraballo‐Rodríguez, Alan K. Jarmusch, Carlos Molina‐Santiago, Julia M. Gauglitz, Emily C. Gentry +6 more

Non-invasive skin sampling detects systemically administered drugs in humans

PLoS ONE(2022)10.1371/journal.pone.0271794

N/A

0DataRank · unranked

10 citations

Kelly C. Weldon, Alan K. Jarmusch, Emily C. Gentry, Arianna Choi, Yadira Sepulveda +6 more

Ferroptosis-Mediated Cell Death Induced by NCX4040, The Non-Steroidal Nitric Oxide Donor, in Human Colorectal Cancer Cells: Implications in Therapy

Cells(2023)10.3390/cells12121626

N/A

0DataRank · unranked

17 citations

Carl D. Bortner, Alan K. Jarmusch, Erik J. Tokar, Carri Murphy, Xian Wu +3 more

Signal Response Evaluation Applied to Untargeted Mass Spectrometry Data to Improve Data Interpretability

Journal of the American Society for Mass Spectrometry(2023)10.1021/jasms.3c00220

N/A

0DataRank · unranked

4 citations

Justin B. Collier, Anton M. Jetten, Alan K. Jarmusch, Kirsten E. Overdahl

Non-targeted chemical analysis of consumer botanical products labeled as blue cohosh (Caulophyllum thalictroides), goldenseal (Hydrastis canadensis), or yohimbe bark (Pausinystalia yohimbe) by NMR and MS

Analytical and Bioanalytical Chemistry(2023)10.1007/s00216-023-05004-y

N/A

0DataRank · unranked

7 citations

Cynthia V. Rider, Stephen S. Ferguson, Alan K. Jarmusch, Geoffrey A. Mueller, Giovanni O. Quiroz-Delfi

Pubertal Girls With Overweight/Obesity Have Higher Androgen Levels—Can Metabolomics Tell us Why?

The Journal of Clinical Endocrinology & Metabolism(2023)10.1210/clinem/dgad675

N/A

0DataRank · unranked

2 citations

Samantha Molsberry, Kirsten E. Overdahl, Alan K. Jarmusch, Natalie D. Shaw, Madison E. Calvert

Alan K. Jarmusch

Indexed papers

Top data-sharing exemplar

Papers