Sagar D. Khare

Also affiliated with Environmental and Occupational Health Sciences Institute

Biochemistry, Genetics and Molecular BiologyMaterials SciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.5Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406637

Top 9%

2.5DataRank

Top 9%28 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Papers

Driven by 26 papers — median percentile 91. Top paper: “Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic”.

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406637

Top 9%

2.5DataRank

Top 9%28 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties

The Journal of Physical Chemistry B(2021)10.1021/acs.jpcb.0c11606

N/A

0DataRank · unranked

102 citations

Roshan Mammen Regy, Elliott M. Dolan, Aishwarya Kanchi Ranganath, Nina Jovic, Sagar D. Khare +3 more

Evolution of the SARS‐CoV‐2 proteome in three dimensions (3D) during the first 6 months of the COVID‐19 pandemic

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26250

N/A

0DataRank · unranked

49 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7

N/A

0DataRank · unranked

27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

Structural models of SARS-CoV-2 Omicron variant in complex with ACE2 receptor or antibodies suggest altered binding interfaces

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.12.472313

N/A

0DataRank · unranked

22 citations

Christopher Markosian, D. Balamurugan, Renata Pasqualini, Wadih Arap, S.K. Burley +2 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423

N/A

0DataRank · unranked

4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more

Introducing a New Bond-Forming Activity in an Archaeal DNA Polymerase by Structure-Guided Enzyme Redesign

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.28.474375

N/A

0DataRank · unranked

1 citations

William A. Hansen, Jonathan Hong, Abir Ganguly, Darrin M. York, Sagar D. Khare +2 more

Massively parallel, computationally-guided design of a pro-enzyme

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.25.437042

N/A

0DataRank · unranked

0 citations

Laura R. Azouz, Ralph E. White, Conceição A.S.A. Minetti, David P. Remeta, Victor M. Tan +3 more

Enantioselective Synthesis of α-Trifluoromethyl Amines via Biocatalytic N–H Bond Insertion with Acceptor-Acceptor Carbene Donors

Journal of the American Chemical Society(2022)10.1021/jacs.1c10750

N/A

0DataRank · unranked

78 citations

Antonio Tinoco, Zhuofan Shen, Ronald D. Adukure, Gopeekrishnan Sreenilayam, Sagar D. Khare +2 more

Tuning Enzyme Thermostability via Computationally Guided Covalent Stapling and Structural Basis of Enhanced Stabilization

Biochemistry(2022)10.1021/acs.biochem.2c00033

N/A

0DataRank · unranked

36 citations

J.P. Bacik, Eric J. Moore, Zhuofan Shen, Ellen M. Irving, David A. Vargas +4 more

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future

Biophysical Reviews(2022)10.1007/s12551-022-01013-w

N/A

0DataRank · unranked

46 citations

Helen M. Berman, Wah Chiu, Wei Dai, Justin W. Flatt, Brian P. Hudson +11 more

Highly stereoselective and enantiodivergent synthesis of cyclopropylphosphonates with engineered carbene transferases

Chemical Science(2022)10.1039/d2sc01965e

N/A

0DataRank · unranked

31 citations

Ajay L. Chandgude, Daniela Maria Carminati, Zhuofan Shen, Sagar D. Khare, Rudi Fasan +1 more

Massively parallel, computationally guided design of a proenzyme

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2116097119

N/A

0DataRank · unranked

13 citations

Laura R. Azouz, Ralph E. White, Conceição A.S.A. Minetti, David P. Remeta, Victor M. Tan +3 more

Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection

Molecular Biology and Evolution(2022)10.1093/molbev/msac091

N/A

0DataRank · unranked

13 citations

Daniela I. Staquicini, Prashant Dogra, Esteban Dodero-Rojas, Joseph H. Lubin, Fenny H. F. Tang +12 more

Bioinformatics and 3D Structural Analysis of the Coronavirus Main Protease Active Site Diversity

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.0r729

N/A

0DataRank · unranked

0 citations

Joseph H. Lubin, Cassandra Olivas, Christine Zardecki, Mary-Agnes Balogun, Mickayla L. Bacorn +3 more

Outcome of Crash Course Training on Protein Structure Prediction with Artificial Intelligence

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.506222

N/A

0DataRank · unranked

0 citations

Maureen Dougherty, Joseph H. Lubin, Paul G. Arias, Janet Chang, Kenneth Dalenberg +7 more

Multifaceted interactions mediated by intrinsically disordered regions play key roles in alpha synuclein aggregation

Current Opinion in Structural Biology(2023)10.1016/j.sbi.2023.102579

N/A

0DataRank · unranked

39 citations

Priscilla Chinchilla, Jean Baum, Sagar D. Khare

Prediction and design of protease enzyme specificity using a structure-aware graph convolutional network

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2303590120

N/A

0DataRank · unranked

28 citations

Joseph H. Lubin, Vidur Sarma, Samuel Z. Stentz, Guanyang Wang, Sijian Wang +2 more

Modeling of ACE2 and antibodies bound to SARS-CoV-2 provides insights into infectivity and immune evasion

JCI Insight(2023)10.1172/jci.insight.168296

N/A

0DataRank · unranked

6 citations

Christopher Markosian, D. Balamurugan, Trung Minh, Chih‐Hsiung Chen, Dongfang Liu +5 more

A comprehensive survey of coronaviral main protease active site diversity in 3D: Identifying and analyzing drug discovery targets in search of broad specificity inhibitors for the next coronavirus pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526101

N/A

0DataRank · unranked

8 citations

Samantha G. Martinusen, Christine Zardecki, Cassandra Olivas, Mickayla Bacorn, MaryAgnes Balogun +8 more

Prediction and Design of Protease Enzyme Specificity Using a Structure-Aware Graph Convolutional Network

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.16.528728

N/A

0DataRank · unranked

3 citations

Joseph H. Lubin, Vidur Sarma, Samuel Z. Stentz, Guanyang Wang, Sijian Wang +2 more

Monomer Choice Influences N-Acryloyl Amino Acid Grafter Conversion via Protease Catalysis

Biomacromolecules(2023)10.1021/acs.biomac.3c00029

N/A

0DataRank · unranked

0 citations

Melinda Liu, Filbert Totsingan, Evan O’Berg, John Salvucci, Uyen Dao +3 more

Framework for Martini-based Coarse-grained Model of Enzymes: Model Development and Experimental Validation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.22.614383

N/A

0DataRank · unranked

0 citations

Sanjeeva Murthy, Nityananda Pal, Sagar D. Khare, Adam J. Gormley, Meenakshi Dutt +1 more

Martini 3 coarse-grained model of enzymes: Framework with validation by all-atom simulations and x-ray diffraction measurements

The Journal of Chemical Physics(2025)10.1063/5.0247634

N/A

0DataRank · unranked

2 citations

N. Sanjeeva Murthy, Nityananda Pal, Sagar D. Khare, Adam J. Gormley, Meenakshi Dutt +1 more

Virtual Boot Camp: COVID‐19 evolution and structural biology

Biochemistry and Molecular Biology Education(2020)10.1002/bmb.21428

N/A

0DataRank · unranked

7 citations

YANA BROMBERG, P. Craig, Siobain Duffy, Shuchismita Dutta, Bonnie L. Hall +14 more

Computational Design of Generalist Cyclopropanases with Stereodivergent Selectivity

ChemRxiv(2025)10.26434/chemrxiv-2025-wzmzg

N/A

0DataRank · unranked

0 citations

Mary G. Siriboe, Xinkun Ren, Thakshila Dayananda, Jermaine L. Jenkins, Sagar D. Khare +2 more

Sagar D. Khare

Indexed papers

Top data-sharing exemplar

Papers