James C. Gee

Also affiliated with Laboratoire d’Imagerie Biomédicale, Penn Center for AIDS Research, University of Pennsylvania, Philadelphia University

Computer ScienceMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

12.4Author DataRank

Indexed papers

14in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 14 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w

Top 6%

3.6DataRank

Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Papers

Driven by 61 papers — median percentile 58. Top paper: “Cellular anatomy of the mouse primary motor cortex”.

Cellular anatomy of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03970-w

Top 6%

3.6DataRank

Top 6%288 citations

Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster +78 more

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00788-6

Top 8%

2.6DataRank

Top 8%123 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

Merged magnetic resonance and light sheet microscopy of the whole mouse brain

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2218617120

Top 17%

1.2DataRank

Top 17%59 citations

Yuqi Tian, David G. Ashbrook, Gary P. Cofer, James J. Cook, James C. Gee +9 more

Cellular Anatomy of the Mouse Primary Motor Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.02.323154

Top 18%

1.2DataRank

Top 18%45 citations

Brian Zingg, Katherine S. Matho, Quanxin Wang, Xiaoyin Chen, Nicholas N. Foster +77 more

A guide to the BRAIN Initiative Cell Census Network data ecosystem

PLoS Biology(2023)10.1371/journal.pbio.3002133

Top 24%

0.845DataRank

Top 24%56 citations

Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit S. Ghosh +95 more

Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage

Nature Methods(2025)10.1038/s41592-024-02563-5

Top 25%

0.802DataRank

Top 25%33 citations

Philip D. Blood, Jonathan C. Silverstein, Matthew Ruffalo, Rahul Satija, Sarah A. Teichmann +95 more

Developmental Mouse Brain Common Coordinate Framework

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.14.557789

Top 36%

0.539DataRank

Top 36%16 citations

Josephine K. Liwang, Rebecca Betty, Daniel J. Vanselow, Yuan-Ting Wu, Nicholas J. Tustison +13 more

Strategies for Implementing Machine Learning Algorithms in the Clinical Practice of Radiology

Radiology(2024)10.1148/radiol.223170

N/A

0.500DataRank · unranked

27 citations

Michael S. Yao, Hersh Sagreiya, Ari D. Goldberg, Neil Chatterjee, Matthew T. MacLean +9 more

DWI Metrics Differentiating Benign Intraductal Papillary Mucinous Neoplasms from Invasive Pancreatic Cancer: A Study in GEM Models

Cancers(2022)10.3390/cancers14164017

N/A

0.416DataRank · unranked

15 citations

Emma E. Furth, Yong Fan, Hee Song, Stephen Pickup, Jianbo Cao +13 more

Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.31.446440

Top 48%

0.381DataRank

Top 48%8 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

ANTsX neuroimaging-derived structural phenotypes of UK Biobank

Scientific Reports(2024)10.1038/s41598-024-59440-6

Top 50%

0.354DataRank

Top 50%7 citations

Michael A. Yassa, Batool Rizvi, Philip A. Cook, Andrew J. Holbrook, Mithra Sathishkumar +5 more

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

Thoracic Aortic Three-Dimensional Geometry

Pulse(2025)10.1159/000543613

Top 58%

0.269DataRank

Top 58%5 citations

Marie‐Joe Dib, Bingxin Zhao, Joe David Azzo, Hamed Tavolinejad, Hannah Maynard +6 more

Clinical correlates of CT imaging-derived phenotypes among lean and overweight patients with hepatic steatosis

Scientific Reports(2024)10.1038/s41598-023-49470-x

N/A

0.208DataRank · unranked

3 citations

Elizabeth Thompson, Anurag Verma, Matthew T. MacLean, Jeffrey Duda, Ameena Elahi +49 more

Thoracic Aortic Three-Dimensional Geometry

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.09.593413

Top 70%

0.165DataRank

Top 70%2 citations

Marie‐Joe Dib, Bingxin Zhao, Joe David Azzo, Hamed Tavolinejad, Hannah Maynard +7 more

The ANTsX ecosystem for mapping the mouse brain

Nature Communications(2025)10.1038/s41467-025-66741-5

Top 70%

0.165DataRank

Top 70%2 citations

Min Chen, Fae N. Kronman, Jeffrey Duda, Clare Gamlin, Mia G. Tustison +8 more

Generalizable CT Vision-Language Modeling for Population Health and Disease Risk

medRxiv(2025)10.1101/2025.07.03.25330654

N/A

0.124DataRank · unranked

1 citations

Joonghyun Kim, Hamed Tavolinejad, Bingxin Zhao, Jessie Dong, Rakesh Sharma +21 more

Neuroanatomical and cellular degeneration associated with a social disorder characterized by new ritualistic belief systems in a TDP-C patient vs. a Pick patient

Frontiers in Neurology(2023)10.3389/fneur.2023.1245886

N/A

0DataRank · unranked

6 citations

Emma Rhodes, Alejandra Bahena, Noah Capp, MaKayla Lowe, Philip Sabatini +14 more

Co-Clinical Imaging Metadata Information (CIMI) for Cancer Research to Promote Open Science, Standardization, and Reproducibility in Preclinical Imaging

Tomography(2023)10.3390/tomography9030081

N/A

0DataRank · unranked

5 citations

James D. Quirk, Andrew W. Lassiter, Richard Laforest, Gregory D. Ayers, Cristian T. Badea +22 more

Antemortem network analysis of spreading pathology in autopsy-confirmed frontotemporal degeneration

Brain Communications(2023)10.1093/braincomms/fcad147

N/A

0DataRank · unranked

4 citations

Sarah Burke, Christopher A. Olm, David J. Irwin, Lauren Massimo, Edward B. Lee +4 more

SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification

Lecture notes in computer science(2023)10.1007/978-3-031-46005-0_5

N/A

0DataRank · unranked

2 citations

Allison Chae, Matthew T. MacLean, Anurag Verma, Jeffrey Duda, James C. Gee +6 more

Novel data-driven subtypes and stages of brain atrophy in the ALS-FTD spectrum

Research Square(2023)10.21203/rs.3.rs-3183113/v1

N/A

0DataRank · unranked

1 citations

Jacob W. Vogel, Jeffrey Duda, Jeffrey S. Phillips, Philip A. Cook, James C. Gee +9 more

ANTsX neuroimaging-derived structural phenotypes of UK Biobank

Research Square(2023)10.21203/rs.3.rs-3459157/v1

Top 100%

0DataRank

Top 100%0 citations

Michael A. Yassa, Batool Rizvi, Philip A. Cook, Andrew J. Holbrook, Mithra Sathishkumar +5 more

Deep learning approach for automated segmentation of myocardium using bone scintigraphy single-photon emission computed tomography/computed tomography in patients with suspected cardiac amyloidosis

Journal of Nuclear Cardiology(2024)10.1016/j.nuclcard.2024.101809

N/A

0DataRank · unranked

15 citations

Chaitanya Rojulpote, Mahesh Vidula, Jeffrey Duda, Matthew T. MacLean, Sophia Swago +9 more

CT imaging-derived phenotypes for abdominal muscle and their association with age and sex in a medical biobank

Scientific Reports(2024)10.1038/s41598-024-64603-6

N/A

0DataRank · unranked

11 citations

Chantal Chahine, Neil Chatterjee, Matthew T. MacLean, Sophia Swago, Abhi Bhattaru +44 more

Pathologic burden goes with the flow: MRI perfusion and pathologic burden in frontotemporal lobar degeneration due to tau

Imaging Neuroscience(2024)10.1162/imag_a_00118

N/A

0DataRank · unranked

1 citations

Claire Peterson, David J. Irwin, Edward B. Lee, John Q. Trojanowski, Lauren Massimo +5 more

A Textbook Remedy for Domain Shifts: Knowledge Priors for Medical Image Analysis

PubMed(2024)10.52202/079017-2879

N/A

0DataRank · unranked

3 citations

Mona A. Gandhi, Yufei Wang, Yifan Wu, Michael S Yao, Chris Callison-Burch +3 more

Neural Ordinary Differential Equation based Sequential Image Registration for Dynamic Characterization

arXiv (Cornell University)(2024)10.48550/arxiv.2404.02106

N/A

0DataRank · unranked

1 citations

Mengjin Dong, Rohit Jena, Qin Chen, James C. Gee, Yifan Wu

Evidence Is All You Need: Ordering Imaging Studies via Language Model Alignment with the ACR Appropriateness Criteria

arXiv (Cornell University)(2024)10.48550/arxiv.2409.19177

N/A

0DataRank · unranked

1 citations

Allison Chae, Charles E. Kahn, Walter R. Witschey, James C. Gee, Hersh Sagreiya +2 more

Boundary-based registration improves sensitivity for detecting hypoperfusion in sporadic frontotemporal lobar degeneration

Frontiers in Neurology(2024)10.3389/fneur.2024.1452944

N/A

0DataRank · unranked

0 citations

Quinn Hlava, Philip A. Cook, Maria Luisa Mandelli, Suzee E. Lee, Bradley F. Boeve +8 more

Generative Adversarial Model-Based Optimization via Source Critic Regularization

PubMed(2024)10.52202/079017-1397

N/A

0DataRank · unranked

0 citations

Yimeng Zeng, Hamsa Bastani, Jacob R. Gardner, James C. Gee, Osbert Bastani +1 more

Predicting Thoracic Aortic Dissection in a Diverse Biobank Using a Polygenic Risk Score

JACC Advances(2025)10.1016/j.jacadv.2025.101743

N/A

0DataRank · unranked

6 citations

Siavash Zamirpour, Sarah Abramowitz, Gina Biagetti, Renae Judy, Cameron Beeche +13 more

Enrichment of patients with concomitant limbic‐predominant age‐related TDP‐43 encephalopathy (LATE) on the Alzheimer's disease continuum using hippocampal volume

Alzheimer s & Dementia(2025)10.1002/alz.70970

N/A

0DataRank · unranked

2 citations

Xueying Lyu, Christopher Brown, Niyousha Sadeghpour, Emily McGrew, Long Xie +7 more

Deep implicit optimization enables robust learnable features for deformable image registration

Medical Image Analysis(2025)10.1016/j.media.2025.103577

N/A

0DataRank · unranked

5 citations

Pratik Chaudhari, James C. Gee, Rohit Jena

Automated characterization of abdominal MRI exams using deep learning

Scientific Reports(2025)10.1038/s41598-025-11985-w

N/A

0DataRank · unranked

4 citations

Allison Chae, Jeffrey J. Duda, Arijitt Borthakur, Daniel J. Rader, James C. Gee +27 more

Functional Lung Imaging Using CT: An Update

Radiology Cardiothoracic Imaging(2025)10.1148/ryct.240505

N/A

0DataRank · unranked

3 citations

J. Biederer, Yoshiharu Ohno, Joon Beom Seo, Grace Párraga, David L. Levin +8 more

Evaluating acute image ordering for real-world patient cases via language model alignment with radiological guidelines

Communications Medicine(2025)10.1038/s43856-025-01061-9

N/A

0DataRank · unranked

2 citations

Allison Chae, Piya V. Saraiya, Charles E. Kahn, Walter R. Witschey, James C. Gee +3 more

Cardiovascular magnetic resonance imaging traits associated with adverse right ventricular remodeling in repaired tetralogy of Fallot: A Single Center Outcomes Using cardiovascular magnetic resonance in Tetralogy of Fallot study

Journal of Cardiovascular Magnetic Resonance(2025)10.1016/j.jocmr.2025.101855

N/A

0DataRank · unranked

2 citations

Ningiun J. Dong, Jin-seo Kim, Abhijit Bhattaru, Phuong Vu, Fengling Hu +15 more

Executive dysfunction relates to salience network desegregation in behavioural variant frontotemporal dementia

NeuroImage Clinical(2025)10.1016/j.nicl.2025.103853

N/A

0DataRank · unranked

2 citations

Hamsanandini Radhakrishnan, Christopher A. Olm, Jeffrey S. Phillips, Philip A. Cook, Emma Rhodes +5 more

ComBat-Predict enhances generalizability of neuroimaging models to new sites

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.21.671401

N/A

0DataRank · unranked

2 citations

Margaret Gardner, Nick Tustison, Philip A. Cook, James C. Gee, Andreana Benitez +7 more

Diversity By Design: Leveraging Distribution Matching for Offline Model-Based Optimization

arXiv (Cornell University)(2025)10.48550/arxiv.2501.18768

N/A

0DataRank · unranked

0 citations

James C. Gee, Osbert Bastani, Michael S. Yao

Executive dysfunction relates to salience network desegregation in behavioral variant frontotemporal dementia

medRxiv(2025)10.1101/2025.03.04.25323383

N/A

0DataRank · unranked

0 citations

Hamsanandini Radhakrishnan, Christopher A. Olm, Jeffrey S. Phillips, Philip A. Cook, Emma Rhodes +5 more

Medical Image Computing and Computer Assisted Intervention – MICCAI 2025

Lecture notes in computer science(2025)10.1007/978-3-032-05162-2

N/A

0DataRank · unranked

0 citations

Daniel C. Alexander, Jaesung Hong, Juan Eugenio Iglesias, Carole H. Sudre, Archana Venkataraman +4 more

Artificial Intelligence System Approaching Neuroradiologist-level Differential Diagnosis Accuracy at Brain MRI

Radiology(2020)10.1148/radiol.2020190283

N/A

0DataRank · unranked

147 citations

Jeffrey D. Rudie, Long Xie, Jiancong Wang, Michael Tran Duong, Emmanuel J. Botzolakis +8 more

Hepatic and abdominal adiposity in type 2 diabetes as assessed with machine learning on CT scans

medRxiv(2025)10.64898/2025.12.16.25342409

N/A

0DataRank · unranked

0 citations

P. Raghupathy, Mohamad Hazim, Elizabeth Thompson, Sophia Swago, Abhijit Bhattaru +9 more

Machine learning suggests polygenic risk for cognitive dysfunction in amyotrophic lateral sclerosis

EMBO Molecular Medicine(2020)10.15252/emmm.202012595

N/A

0DataRank · unranked

28 citations

Michael Benatar, Joanne Wuu, Evadnie Rampersaud, Laura Hennessy, Vivianna M. Van Deerlin +29 more

The ANTsX ecosystem for quantitative biological and medical imaging

medRxiv(2020)10.1101/2020.10.19.20215392

N/A

0DataRank · unranked

31 citations

Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, Gabriel A. Devenyi +10 more

The influence of axial length upon the retinal ganglion cell layer of the human eye

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.18.159871

N/A

0DataRank · unranked

1 citations

Jill Nofziger, Ritobrato Datta, James C. Gee, Jessica I. W. Morgan, Geoffrey K. Aguirre +1 more

The DTI Challenge: Toward Standardized Evaluation of Diffusion Tensor Imaging Tractography for Neurosurgery: The DTI Challenge on Tractography for Neurosurgery

UNC Libraries(2020)10.17615/p2zv-5d79

N/A

0DataRank · unranked

0 citations

Antonio Tristán‐Vega, Peter Neher, Guido Gerig, Terry M. Peters, Sylvain Gouttard +24 more

The ANTsX ecosystem for quantitative biological and medical imaging

Scientific Reports(2021)10.1038/s41598-021-87564-6

N/A

0DataRank · unranked

412 citations

Philip A. Cook, Andrew J. Holbrook, Hans J. Johnson, John Muschelli, Gabriel A. Devenyi +9 more

Rates of longitudinal change in 18F‐flortaucipir PET vary by brain region, cognitive impairment, and age in atypical Alzheimer's disease

Alzheimer s & Dementia(2021)10.1002/alz.12456

N/A

0DataRank · unranked

30 citations

Frederick Nitchie, Fulvio Da Re, Christopher A. Olm, Philip A. Cook, Corey T. McMillan +7 more

Image‐ versus histogram‐based considerations in semantic segmentation of pulmonary hyperpolarized gas images

Magnetic Resonance in Medicine(2021)10.1002/mrm.28908

N/A

0DataRank · unranked

17 citations

Talissa A. Altes, Kun Qing, Mu He, G. Wilson Miller, Brian Avants +5 more

Fully Automated Placental Volume Quantification From3DUltrasound for Prediction of Small‐for‐Gestational‐Age Infants

Journal of Ultrasound in Medicine(2021)10.1002/jum.15835

N/A

0DataRank · unranked

11 citations

İpek Oğuz, Jiancong Wang, Alison M. Pouch, Natalie Yushkevich, Shobhana Parameshwaran +4 more

Transparent Machine Learning Models to Diagnose Suspicious Thoracic Lesions Leveraging CT Guided Biopsy Data

Academic Radiology(2021)10.1016/j.acra.2021.07.002

N/A

0DataRank · unranked

1 citations

Nicholas A. Sachs, James C. Gee, Eduardo J. Mortani Barbosa, William D. Lindsay

Joint ex vivo MRI and histology detect iron-rich cortical gliosis in Tau and TDP-43 proteinopathies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.14.439064

N/A

0DataRank · unranked

1 citations

Daniel T. Ohm, Rebecca Lobrovich, Sandhitsu R. Das, Gabor Mizsei, Karthik Prabhakaran +12 more

Image- vs. histogram-based considerations in semantic segmentation of pulmonary hyperpolarized gas images

medRxiv(2021)10.1101/2021.03.04.21252588

N/A

0DataRank · unranked

0 citations

Talissa A. Altes, Kun Qing, Mu He, G. Wilson Miller, Brian Avants +5 more

Phases of volume loss in patients with known frontotemporal lobar degeneration spectrum pathology

Neurobiology of Aging(2022)10.1016/j.neurobiolaging.2022.02.007

N/A

0DataRank · unranked

14 citations

Jeffrey S. Phillips, Christopher A. Olm, Claire Peterson, Philip A. Cook, James C. Gee +6 more

Event-based modeling of T1-weighted MRI is related to pathology in frontotemporal lobar degeneration due to tau and TDP

NeuroImage Clinical(2022)10.1016/j.nicl.2022.103285

N/A

0DataRank · unranked

5 citations

Sarah Burke, Claire Peterson, Edward B. Lee, John Q. Trojanowski, Lauren Massimo +4 more

NODEO: A Neural Ordinary Differential Equation Based Optimization Framework for Deformable Image Registration

2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)(2022)10.1109/cvpr52688.2022.02014

N/A

0DataRank · unranked

32 citations

Tom Z. Jiahao, Jiancong Wang, Paul A. Yushkevich, M. Ani Hsieh, James C. Gee +1 more

Novel data-driven subtypes and stages of brain atrophy in the ALS–FTD spectrum

Translational Neurodegeneration(2023)10.1186/s40035-023-00389-3

N/A

0DataRank · unranked

19 citations

Jacob W. Vogel, Jeffrey Duda, Jeffrey S. Phillips, Philip A. Cook, James C. Gee +9 more

Spatiotemporal profile of atrophy in the first year following moderate‐severe traumatic brain injury

Human Brain Mapping(2023)10.1002/hbm.26410

N/A

0DataRank · unranked

10 citations

Jeffrey Duda, Jeffrey B. Ware, John Whyte, Joon Yul Choi, James J. Gugger +7 more

James C. Gee

Indexed papers

Top data-sharing exemplar

Papers