Guo‐Cheng Yuan

Also affiliated with Icahn School of Medicine at Mount Sinai

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

6.4Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

Genome Medicine(2021)10.1186/s13073-021-00933-8

Top 6%

3.8DataRank

Top 6%116 citations

Hao-Chih Lee, Georgios Voloudakis, Shengbao Suo, Behnam Javidfar, Zhiping Shao +17 more

Papers

Driven by 52 papers — median percentile 78. Top paper: “Giotto: a toolbox for integrative analysis and visualization of spatial expression data”.

Giotto: a toolbox for integrative analysis and visualization of spatial expression data

Genome biology(2021)10.1186/s13059-021-02286-2

N/A

7.2DataRank · unranked

967 citations

Qian Zhu, Rui Dong, Chee-Huat Linus Eng, Huipeng Li, Kan Liu +9 more

Single-nucleus transcriptome analysis of human brain immune response in patients with severe COVID-19

Genome Medicine(2021)10.1186/s13073-021-00933-8

Top 6%

3.8DataRank

Top 6%116 citations

Hao-Chih Lee, Georgios Voloudakis, Shengbao Suo, Behnam Javidfar, Zhiping Shao +17 more

Spatial transcriptomics defines injury specific microenvironments and cellular interactions in kidney regeneration and disease

Nature Communications(2024)10.1038/s41467-024-51186-z

N/A

2.6DataRank · unranked

59 citations

Louisa M.S. Gerhardt, Jina Yun, Kari Koppitch, Katsuya Lex Colón, Henry Amrhein +7 more

Multi-omic profiling of the developing human cerebral cortex at the single-cell level

Science Advances(2023)10.1126/sciadv.adg3754

Top 10%

2.0DataRank

Top 10%115 citations

Jaroslav Bendl, Samir Rahman, James M. Vicari, Claire Coleman, Tereza Clarence +9 more

Multi-scale chromatin state annotation using a hierarchical hidden Markov model

Nature Communications(2017)10.1038/ncomms15011

N/A

1.9DataRank · unranked

65 citations

Wouter Meuleman, Jialiang Huang, Kimberly Glass, Luca Pinello, Jianrong Wang +3 more

Immunosuppressive Myeloid Cells Induce Nitric Oxide–Dependent DNA Damage and p53 Pathway Activation in CD8+ T Cells

Cancer Immunology Research(2021)10.1158/2326-6066.cir-20-0085

N/A

1.4DataRank · unranked

44 citations

Shengbao Suo, S Badrinath, Sushil Kumar, Johannes C. Melms, Adrienne Luoma +6 more

Molecular Pathways of Colon Inflammation Induced by Cancer Immunotherapy

Cell(2020)10.1016/j.cell.2020.06.001

N/A

0.927DataRank · unranked

481 citations

Shengbao Suo, Hannah L. Williams, Tatyana Sharova, Keri M. Sullivan, Michael P. Manos +11 more

Integrated spatial genomics reveals global architecture of single nuclei

Nature(2021)10.1038/s41586-020-03126-2

N/A

0.915DataRank · unranked

446 citations

Jina Yun, Shiwei Zheng, Noah Ollikainen, Nico Pierson, Jonathan A. White +8 more

A vaccine targeting resistant tumours by dual T cell plus NK cell attack

Nature(2022)10.1038/s41586-022-04772-4

N/A

0.748DataRank · unranked

145 citations

Maxence O. Dellacherie, Aileen W. Li, Shiwei Zheng, Xixi Zhang, Miguel C. Sobral +12 more

Guidelines for bioinformatics of single-cell sequencing data analysis in Alzheimer’s disease: review, recommendation, implementation and application

Molecular Neurodegeneration(2022)10.1186/s13024-022-00517-z

N/A

0.686DataRank · unranked

96 citations

Won‐Min Song, Ming Chen, Qian Wang, Xianxiao Zhou, Peng Xu +7 more

Multi-omic profiling of the developing human cerebral cortex at the single cell level

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.14.512250

Top 34%

0.573DataRank

Top 34%10 citations

Jaroslav Bendl, Samir Rahman, James M. Vicari, Claire Coleman, Tereza Clarence +9 more

Plasticity of Human Microglia and Brain Perivascular Macrophages in Aging and Alzheimer’s Disease

medRxiv(2023)10.1101/2023.10.25.23297558

N/A

0.548DataRank · unranked

17 citations

James M. Vicari, Christian Porras, Collin Spencer, Milos Pjanic, Xinyi Wang +30 more

Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation

Developmental Cell(2023)10.1016/j.devcel.2023.03.020

N/A

0.515DataRank · unranked

30 citations

Nathan J. VanDusen, Yanchun Zhang, Yangpo Cao, Isha Sethi, Rong Hu +16 more

Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02433-9

N/A

0.436DataRank · unranked

15 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Multiomic single-cell profiling identifies critical regulators of postnatal brain

Nature Genetics(2025)10.1038/s41588-025-02083-8

N/A

0.385DataRank · unranked

12 citations

Jaroslav Bendl, Xuan Cao, Xinyi Wang, Shiwei Zheng, Gabriel E. Hoffman +14 more

The landscape of human tissue and cell type specific expression and co-regulation of senescence genes

Molecular Neurodegeneration(2022)10.1186/s13024-021-00507-7

N/A

0DataRank · unranked

114 citations

Minghui Wang, Won‐Min Song, Qian Wang, Guo‐Cheng Yuan, Peter H. Sudmant +5 more

MLL::AF9 degradation induces rapid changes in transcriptional elongation and subsequent loss of an active chromatin landscape

Molecular Cell(2022)10.1016/j.molcel.2022.02.013

N/A

0DataRank · unranked

70 citations

Laura Godfrey, James P. Healy, Yoolim A. Choi, Kai Yan, Charles Hatton +6 more

Analyzing Spatial Transcriptomics Data Using Giotto

Current Protocols(2022)10.1002/cpz1.405

N/A

0DataRank · unranked

24 citations

Jiaji G. Chen, Guo‐Cheng Yuan, Ruben Dries, Natalie Del Rossi

Targeting of the CD161 inhibitory receptor enhances T-cell–mediated immunity against hematological malignancies

Blood(2023)10.1182/blood.2023022882

N/A

0DataRank · unranked

21 citations

Byong H. Kang, Oleksandr Kyrysyuk, Shiwei Zheng, Hao Wang, Nathan D. Mathewson +9 more

Identifying quantitatively differential chromosomal compartmentalization changes and their biological significance from Hi-C data using DARIC

BMC Genomics(2023)10.1186/s12864-023-09675-w

N/A

0DataRank · unranked

4 citations

Nan Liu, Stuart H. Orkin, Guo‐Cheng Yuan, Kai Yan

Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.26.568752

N/A

0DataRank · unranked

21 citations

Joselyn Cristina Chávez-Fuentes, Matthew O’Brien, Junxiang Xu, Edward Ruiz, Wen Wang +7 more

Spatial transcriptomics defines injury-specific microenvironments in the adult mouse kidney and novel cellular interactions in regeneration and disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.22.568217

N/A

0DataRank · unranked

7 citations

Louisa M.S. Gerhardt, Jina Yun, Kari Koppitch, Katsuya Lex Colón, Henry Amrhein +6 more

Myeloid cell influx into the colonic epithelium is associated with disease severity and non-response to anti-Tumor Necrosis Factor Therapy in patients with Ulcerative Colitis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.02.542863

N/A

0DataRank · unranked

5 citations

Zainab Al-Taie, Azra Krek, Shadi Toghi Eshghi, Aurélie Fantou, Thomas Laurent +29 more

QuadST: A Powerful and Robust Approach for Identifying Cell–Cell Interaction-Changed Genes on Spatially Resolved Transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.570019

N/A

0DataRank · unranked

1 citations

Michelle E. Ehrlich, Panos Roussos, Pei Wang, Guo‐Cheng Yuan, Xiaoyu Song +1 more

Broad H3K4me3 Domain Is Associated with Spatial Coherence during Mammalian Embryonic Development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.11.570452

N/A

0DataRank · unranked

1 citations

Terry Ma, Rong Fan, Guo‐Cheng Yuan, Xuan Thang Cao

Data from Immunosuppressive Myeloid Cells Induce Nitric Oxide–Dependent DNA Damage and p53 Pathway Activation in CD8+ T Cells

(2023)10.1158/2326-6066.c.6550204.v1

N/A

0DataRank · unranked

0 citations

Shengbao Suo, S Badrinath, Sushil Kumar, Johannes C. Melms, Adrienne Luoma +6 more

WEST is an ensemble method for spatial transcriptomics analysis

Cell Reports Methods(2024)10.1016/j.crmeth.2024.100886

N/A

0DataRank · unranked

6 citations

Huimin Cheng, Shushan Wu, Wenxuan Zhong, Guo‐Cheng Yuan, Ping Ma +1 more

Systematic analysis identifies a connection between spatial and genomic variations of chromatin states

Cell Systems(2024)10.1016/j.cels.2024.10.006

N/A

0DataRank · unranked

4 citations

Terry Ma, Rong Fan, Guo‐Cheng Yuan, Xuan Cao

Orthogonal multimodality integration and clustering in single-cell data

BMC Bioinformatics(2024)10.1186/s12859-024-05773-y

N/A

0DataRank · unranked

8 citations

Yongkai Chen, Haoran Lu, Wenxuan Zhong, Guo‐Cheng Yuan, Ping Ma +1 more

RECCIPE: A new framework assessing localized cell-cell interaction on gene expression in multicellular ST data

Frontiers in Genetics(2024)10.3389/fgene.2024.1322886

N/A

0DataRank · unranked

4 citations

Xiaoyu Song, Guo‐Cheng Yuan, Pei Wang, Weiping Ma

Characterizing Spatially Continuous Variations in Tissue Microenvironment through Niche Trajectory Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.23.590827

N/A

0DataRank · unranked

2 citations

Shiwei Zheng, Sujung Crystal Shin, Guo‐Cheng Yuan, Wen Wang

Giotto Suite: a multiscale and technology-agnostic spatial multiomics analysis ecosystem

Nature Methods(2025)10.1038/s41592-025-02817-w

N/A

0DataRank · unranked

26 citations

Joselyn Chávez, Matthew O’Brien, Junxiang Xu, Edward C. Ruiz, Wen Wang +11 more

ONTraC characterizes spatially continuous variations of tissue microenvironment through niche trajectory analysis

Genome biology(2025)10.1186/s13059-025-03588-5

N/A

0DataRank · unranked

4 citations

Shiwei Zheng, Sujung Crystal Shin, Joselyn Cristina Chávez-Fuentes, Guo‐Cheng Yuan, Wen Wang

Protocol to boost the robustness and accuracy of spatial transcriptomics algorithms using ensemble techniques

STAR Protocols(2025)10.1016/j.xpro.2025.103608

N/A

0DataRank · unranked

2 citations

Shushan Wu, Huimin Cheng, Wenxuan Zhong, Guo‐Cheng Yuan, Ping Ma +1 more

sCCIgen: A high-fidelity spatially resolved transcriptomics data simulator for cell-cell interaction studies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.07.631830

N/A

0DataRank · unranked

0 citations

Joselyn Cristina Chávez-Fuentes, Weiping Ma, Weijia Fu, Pei Wang, Guo‐Cheng Yuan +1 more

QuadST identifies cell–cell interaction–changed genes in spatially resolved transcriptomics data

Genome Research(2025)10.1101/gr.279859.124

N/A

0DataRank · unranked

0 citations

Yuqing Shang, Michelle E. Ehrlich, Panos Roussos, Guo‐Cheng Yuan, Pei Wang +1 more

Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/96cj-z232

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

sCCIgen: a high-fidelity spatially resolved transcriptomics data simulator for cell–cell interaction studies

Genome biology(2025)10.1186/s13059-025-03762-9

Top 100%

0DataRank

Top 100%0 citations

Joselyn Cristina Chávez-Fuentes, Weiping Ma, Weijia Fu, Sujung Crystal Shin, Pei Wang +2 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02468-y

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/vzc0-qk25

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

GiniClust3: a fast and memory-efficient tool for rare cell type identification

BMC Bioinformatics(2020)10.1186/s12859-020-3482-1

N/A

0DataRank · unranked

82 citations

Guo‐Cheng Yuan, Rui Dong

Multi-scale annotations of chromatin states in 127 human cell-types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.22.424078

N/A

0DataRank · unranked

3 citations

Stephanos Tsoucas, Shengbao Suo, Guo‐Cheng Yuan, Kai Yan

SpatialDWLS: accurate deconvolution of spatial transcriptomic data

Genome biology(2021)10.1186/s13059-021-02362-7

N/A

0DataRank · unranked

328 citations

Guo‐Cheng Yuan, Rui Dong

CUT&RUNTools 2.0: a pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis

Bioinformatics(2021)10.1093/bioinformatics/btab507

N/A

0DataRank · unranked

66 citations

Vijay G. Sankaran, Guo‐Cheng Yuan, Fulong Yu

Massively parallel in vivo CRISPR screening identifies RNF20/40 as epigenetic regulators of cardiomyocyte maturation

Nature Communications(2021)10.1038/s41467-021-24743-z

N/A

0DataRank · unranked

64 citations

Julianna Y. Lee, Weiliang Gu, Catalina E. Butler, Isha Sethi, Yanjiang Zheng +8 more

Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture

Nature Communications(2021)10.1038/s41467-021-26574-4

N/A

0DataRank · unranked

47 citations

Özgün Uyan, Kai Yan, Tianxin Liu, Qian Zhu, Zuzana Tóthová +6 more

Mapping the evolving landscape of super-enhancers during cell differentiation

Genome biology(2021)10.1186/s13059-021-02485-x

N/A

0DataRank · unranked

45 citations

Bin E. Li, Ming Zhu, Grace Y. Li, Fei Chen, Yingli Han +6 more

Advances in spatial transcriptomic data analysis

Genome Research(2021)10.1101/gr.275224.121

N/A

0DataRank · unranked

263 citations

Jiaji Chen, Natalie Del Rossi, Mohammed Muzamil Khan, Adriana Sistig, Guo‐Cheng Yuan +1 more

SpatialDWLS: accurate deconvolution of spatial transcriptomic data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.02.429429

N/A

0DataRank · unranked

11 citations

Guo‐Cheng Yuan, Rui Dong

CUT&RUNTools 2.0: A pipeline for single-cell and bulk-level CUT&RUN and CUT&Tag data analysis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.26.428013

N/A

0DataRank · unranked

2 citations

Vijay G. Sankaran, Guo‐Cheng Yuan, Fulong Yu

Integrated spatial genomics in tissues reveals invariant and cell type dependent nuclear architecture

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441547

N/A

0DataRank · unranked

2 citations

Shiwei Zheng, Jina Yun, Sheel Shah, Nico Pierson, Jonathan A. White +5 more

The landscape of human brain immune response in patients with severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.425999

N/A

0DataRank · unranked

1 citations

Hao-Chih Lee, Georgios Voloudakis, Shengbao Suo, Zhiping Shao, Cyril Peter +13 more

Guo‐Cheng Yuan

Indexed papers

Top data-sharing exemplar

Papers