John E. Straub

Also affiliated with University of Massachusetts Boston, Boston University Academy

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMedicineMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer’s Disease, Parkinson’s Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis”.

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer’s Disease, Parkinson’s Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis

Chemical Reviews(2021)10.1021/acs.chemrev.0c01122

N/A

7.3DataRank · unranked

672 citations

Ayyalusamy Ramamoorthy, Bikash R. Sahoo, Jie Zheng, Peter Faller, John E. Straub +29 more

All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

The Journal of Physical Chemistry B(1998)10.1021/jp973084f

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1.4DataRank · unranked

14461 citations

D. Bashford, M. Bellott, J. D. Evanseck, M. J. Field, S. Fischer +46 more

Differences in the free energies between the excited states of A β 40 and A β 42 monomers encode their aggregation propensities

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2002570117

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0DataRank · unranked

73 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty

Structural Basis for Lipid Binding and Function by an Evolutionarily Conserved Protein, Serum Amyloid A

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.01.029

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0DataRank · unranked

22 citations

Meera Kumanan, Thomas E. Wales, Asanga Bandara, Marcus Fändrich, John E. Straub +3 more

Bicelles Rich in both Sphingolipids and Cholesterol and Their Use in Studies of Membrane Proteins

Journal of the American Chemical Society(2020)10.1021/jacs.0c04669

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0DataRank · unranked

42 citations

Kuo‐Chih Shih, Holger A. Scheidt, Sarah M. Fantin, Kristine F. Parson, George A. Pantelopulos +15 more

Differences in the free energies between the excited states of A β 40 and A β 42 monomers encode their distinct aggregation propensities

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.09.940676

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0DataRank · unranked

4 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty

Interfacial hydration determines orientational and functional dimorphism of sterol-derived Raman tags in lipid-coated nanoparticles

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2105913118

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0DataRank · unranked

21 citations

Ayan Majumder, James McNeely, Jialing Yang, Taranee Puri, Zhiliang He +5 more

Sequence Determines the Switch in the Fibril Forming Regions in the Low Complexity FUS Protein and Its Variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451535

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0DataRank · unranked

1 citations

Debayan Chakraborty, Mauro L. Mugnai, John E. Straub, D. Thirumalai, Abhinaw Kumar

Efficient calculation of the free energy for protein partitioning using restraining potentials

Biophysical Journal(2022)10.1016/j.bpj.2022.07.031

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0DataRank · unranked

11 citations

George A. Pantelopulos, John E. Straub, Seulki Kwon

Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages

Science Advances(2023)10.1126/sciadv.add6921

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0DataRank · unranked

38 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty

Synergistic computational and experimental studies of a phosphoglycosyl transferase membrane/ligand ensemble

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105194

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0DataRank · unranked

13 citations

Nemanja Vuksanovic, Leah Ray, Hannah M. Bernstein, Karen N. Allen, Barbara Imperiali +2 more

Characterizing the transmembrane domains of ADAM10 and BACE1 and the impact of membrane composition

Biophysical Journal(2023)10.1016/j.bpj.2023.08.025

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0DataRank · unranked

7 citations

Lin Xu, George A. Pantelopulos, John E. Straub, Conor B. Abraham

The role of structural heterogeneity in the homodimerization of transmembrane proteins

The Journal of Chemical Physics(2023)10.1063/5.0159801

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0DataRank · unranked

9 citations

John E. Straub, Ayan Majumder

Conformational fluctuations and phases in fused in sarcoma (FUS) low‐complexity domain

Biopolymers(2023)10.1002/bip.23558

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0DataRank · unranked

6 citations

Abhinaw Kumar, Debayan Chakraborty, John E. Straub, Mauro L. Mugnai, D. Thirumalai

Sizes, conformational fluctuations, and SAXS profiles for Intrinsically Disordered Proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.538147

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0DataRank · unranked

15 citations

Debayan Chakraborty, Abhinaw Kumar, Hung T. Nguyen, Wade F. Zeno, Jeanne C. Stachowiak +3 more

Synergistic computational and experimental studies of a phosphoglycosyl transferase membrane/ligand ensemble

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.07.539694

N/A

0DataRank · unranked

5 citations

Nemanja Vuksanovic, Leah Ray, Hannah M. Bernstein, Karen N. Allen, Barbara Imperiali +2 more

Cholesterol and Lipid Rafts in the Biogenesis of Amyloid-β Protein and Alzheimer's Disease

Annual Review of Biophysics(2024)10.1146/annurev-biophys-062823-023436

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0DataRank · unranked

32 citations

Conor B. Abraham, John E. Straub, George A. Pantelopulos

Machine Learning Derived Collective Variables for the Study of Protein Homodimerization in Membrane

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00454

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0DataRank · unranked

15 citations

John E. Straub, Ayan Majumder

Exploring Free Energy Landscapes for Protein Partitioning into Membrane Domains in All-Atom and Coarse-Grained Simulations

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00881

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0DataRank · unranked

6 citations

Ayan Majumder, John E. Straub, Seulki Kwon

Probing the Origins of the Disorder-to-Order Transition of a Modified Cholesterol in Ternary Lipid Bilayers

Journal of the American Chemical Society(2024)10.1021/jacs.4c09495

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0DataRank · unranked

5 citations

Yuanqing Gu, Y. Chen, Xingda An, Björn M. Reinhard, John E. Straub +1 more

Sizes, conformational fluctuations, and SAXS profiles for intrinsically disordered proteins

Protein Science(2025)10.1002/pro.70067

N/A

0DataRank · unranked

10 citations

Debayan Chakraborty, Hung T. Nguyen, Farkhad Maksudov, Abhinaw Kumar, Wade F. Zeno +4 more

Kinetics and Mechanism of Phase Separation in Ternary Lipid Mixtures Containing APP C99: Atomistic vs Coarse-Grained MD Simulations

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00016

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0DataRank · unranked

2 citations

Sangram Prusty, Asanga Bandara, John E. Straub, George A. Pantelopulos

Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction

Chemical Reviews(2020)10.1021/acs.chemrev.9b00813

N/A

0DataRank · unranked

413 citations

Bartosz Błasiak, Jens Bredenbeck, Minhaeng Cho, Jun‐Ho Choi, Steven A. Corcelli +25 more