🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jed A. Fuhrman

University of Southern California

ORCID: 0000-0002-2361-1985

Also affiliated with California Southern University

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
7.6Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823
Top 3%
6.9DataRank
Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Papers

Driven by 12 papers — median percentile 83. Top paper: “Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications”.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823
Top 3%
6.9DataRank
Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Identifying viruses from metagenomic data using deep learning

Quantitative Biology(2020)10.1007/s40484-019-0187-4
N/A
0.973DataRank · unranked
656 citations

Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li +4 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252.2
Top 30%
0.654DataRank
Top 30%9 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252
N/A
0.276DataRank · unranked
2 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

Phage–bacterial contig association prediction with a convolutional neural network

Bioinformatics(2022)10.1093/bioinformatics/btac239
N/A
0DataRank · unranked
11 citations

Shengwei Hou, Jed A. Fuhrman, Fengzhu Sun, Tianqi Tang

ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data

Nature Communications(2023)10.1038/s41467-023-35945-y
N/A
0DataRank · unranked
38 citations

Jed A. Fuhrman, Fengzhu Sun, Yuxuan Du

Diverse Marine T4-like Cyanophage Communities Are Primarily Comprised of Low-Abundance Species Including Species with Distinct Seasonal, Persistent, Occasional, or Sporadic Dynamics

Viruses(2023)10.3390/v15020581
N/A
0DataRank · unranked
17 citations

Jed A. Fuhrman, Nathan A. Ahlgren, Emily Dart

Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.12.607631
N/A
0DataRank · unranked
3 citations

Benjamin Minch, JL Weissman, Shengwei Hou, Yi‐Chun Yeh, J. Cesar Ignacio‐Espinoza +4 more

Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series

ISME Communications(2025)10.1093/ismeco/ycaf217
N/A
0DataRank · unranked
2 citations

Benjamin Minch, JL Weissman, Shengwei Hou, Yi‐Chun Yeh, J. Cesar Ignacio‐Espinoza +4 more

A network-based integrated framework for predicting virus–prokaryote interactions

NAR Genomics and Bioinformatics(2020)10.1093/nargab/lqaa044
N/A
0DataRank · unranked
147 citations

Jie Ren, Kujin Tang, Emily Dart, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman +4 more

DeepMicroClass sorts metagenomes into prokaryotes, eukaryotes and viruses, with marine applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.26.466018
N/A
0DataRank · unranked
9 citations

Tianqi Tang, Siliangyu Cheng, Ting Chen, Jed A. Fuhrman, Fengzhu Sun +1 more

DeepMicrobeFinder Sorts Metagenomes into Prokaryotes, Eukaryotes and Viruses, with Marine Applications

Research Square(2021)10.21203/rs.3.rs-1016976/v1
N/A
0DataRank · unranked
3 citations

Siliangyu Cheng, Ting Chen, Jed A. Fuhrman, Fengzhu Sun, Shengwei Hou