🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ludwig Geistlinger

Harvard University

ORCID: 0000-0002-2495-5464

Also affiliated with Lemuel Shattuck Hospital

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.0Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

Nature Biotechnology(2023)10.1038/s41587-023-01872-y
Top 22%
0.934DataRank
Top 22%19 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, C. M. Grieve +16 more

Papers

Driven by 23 papers — median percentile 55. Top paper: “Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space”.

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space

Cell Genomics(2022)10.1016/j.xgen.2021.100085
N/A
3.9DataRank · unranked
132 citations

Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll +95 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

Nature Biotechnology(2023)10.1038/s41587-023-01872-y
Top 22%
0.934DataRank
Top 22%19 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, C. M. Grieve +16 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x
N/A
0.918DataRank · unranked
454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma

Cancer Research(2020)10.1158/0008-5472.can-20-0521
N/A
0.728DataRank · unranked
127 citations

Sehyun Oh, Marcel Ramos, Lucas Schiffer, Rebecca S. LaRue, Christine Henzler +16 more

Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling

Cell(2024)10.1016/j.cell.2024.03.013
N/A
0.706DataRank · unranked
110 citations

Kisha N. Sivanathan, Aditya Misra, Rosalind J. Xu, Davide Mangani, Evan Yang +16 more

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Nature Communications(2022)10.1038/s41467-022-31411-3
N/A
0.523DataRank · unranked
14 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

Nature Communications(2025)10.1038/s41467-025-66888-1
Top 41%
0.461DataRank
Top 41%17 citations

Giacomo Antonello, Lucas Schiffer, Davide Golzato, Andres Wokaty, Francesco Beghini +32 more

Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466079
Top 45%
0.415DataRank
Top 45%4 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +7 more

BioPlexR and BioPlexPy: integrated data products for the analysis of human protein interactions

Bioinformatics(2023)10.1093/bioinformatics/btad091
Top 45%
0.405DataRank
Top 45%8 citations

Roger Vargas, Tyrone Lee, Joshua Pan, Edward L. Huttlin, Robert Gentleman +1 more

Charting the cellular biogeography in colitis reveals fibroblast trajectories and coordinated spatial remodeling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539701
N/A
0.396DataRank · unranked
13 citations

Kisha N. Sivanathan, Aditya Misra, Rosalind J. Xu, Davide Mangani, Evan Yang +15 more

Curated single cell multimodal landmark datasets for R/Bioconductor

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011324
Top 48%
0.375DataRank
Top 48%7 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +6 more

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

medRxiv(2022)10.1101/2022.10.24.22281483
Top 55%
0.301DataRank
Top 55%3 citations

Chloe Mirzayi, Fatima Zohra, Rimsha Azhar, Shaimaa Elsafoury, Claire Grieve +16 more

Learning and teaching biological data science in the Bioconductor community

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012925
N/A
0.241DataRank · unranked
4 citations

Frederick J. Tan, Fabricio Almeida‐Silva, Robert Castelo, Aedín C. Culhane, Sean Davis +13 more

A spatial atlas of the complement system uncovers unique expression patterns in postnatal brain development in mice

Nature Communications(2025)10.1038/s41467-025-66048-5
N/A
0.165DataRank · unranked
2 citations

Brianna R. Watson, Ajitanuj Rattan, Tyrone Lee, Smriti Chawla, Ludwig Geistlinger +10 more

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900
Top 78%
0.104DataRank
Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.21.665958
N/A
0DataRank · unranked
0 citations

Paolo Cadinu, Phillip Nicol, U. Herrmann, Tyrone Lee, Ludwig Geistlinger +3 more

SIMON: Open-Source Knowledge Discovery Platform

Patterns(2021)10.1016/j.patter.2020.100178
N/A
0DataRank · unranked
24 citations

Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kühn, Rachel L. Spreng +13 more

RaggedExperiment: the missing link between genomic ranges and matrices in Bioconductor

Bioinformatics(2023)10.1093/bioinformatics/btad330
N/A
0DataRank · unranked
1 citations

Martin Morgan, Ludwig Geistlinger, Vincent J. Carey, Levi Waldron, Marcel Ramos

Data from Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma

(2023)10.1158/1078-0432.c.6528887.v1
N/A
0DataRank · unranked
0 citations

Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Zhaleh Safikhani, Deena M.A. Gendoo +5 more

Thyroid hormone remodels cortex to coordinate body-wide metabolism and exploration

Cell(2024)10.1016/j.cell.2024.07.041
N/A
0DataRank · unranked
45 citations

Lauren Hulshof, Amanda Urke, Wengang Wang, Alexandra C. Dubinsky, Hannah C Farnsworth +23 more

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease

Molecular Systems Biology(2024)10.1038/s44320-024-00027-8
N/A
0DataRank · unranked
11 citations

Sena Bae, Yancong Zhang, Eunyoung Chun, Julián Ávila-Pacheco, Ludwig Geistlinger +11 more

AlphaMissenseR: an integrated framework for investigating missense mutations in human protein-coding genes

Bioinformatics Advances(2024)10.1093/bioadv/vbaf093
N/A
0DataRank · unranked
2 citations

Tyrone Lee, Nitesh Turaga, Robert Gentleman, Ludwig Geistlinger, Martin Morgan +1 more

A platform for the biomedical application of large language models

Nature Biotechnology(2025)10.1038/s41587-024-02534-3
N/A
0DataRank · unranked
53 citations

Shaohong Feng, Noah Bruderer, Andreas Maier, A. Dı́az, Amy Strange +38 more