🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Joan S. Brugge

Harvard University

ORCID: 0000-0002-2547-4814
MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.1Author DataRank

Indexed papers

5in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A human breast atlas integrating single-cell proteomics and transcriptomics

Developmental Cell(2022)10.1016/j.devcel.2022.05.003
Top 7%
3.2DataRank
Top 7%163 citations

Carman Man-Chung Li, Jennifer M. Rosenbluth, Laura M. Selfors, Nomeda Girnius, Ron C.J. Schackmann +15 more

Papers

Driven by 28 papers — median percentile 91. Top paper: “3D Culture Models with CRISPR Screens Reveal Hyperactive NRF2 as a Prerequisite for Spheroid Formation via Regulation of Proliferation and Ferroptosis”.

3D Culture Models with CRISPR Screens Reveal Hyperactive NRF2 as a Prerequisite for Spheroid Formation via Regulation of Proliferation and Ferroptosis

Molecular Cell(2020)10.1016/j.molcel.2020.10.010
N/A
6.1DataRank · unranked
201 citations

Patricia Cho, Laura M. Selfors, Hendrik J. Kuiken, Roma Kaul, Takuro Fujiwara +5 more

A human breast atlas integrating single-cell proteomics and transcriptomics

Developmental Cell(2022)10.1016/j.devcel.2022.05.003
Top 7%
3.2DataRank
Top 7%163 citations

Carman Man-Chung Li, Jennifer M. Rosenbluth, Laura M. Selfors, Nomeda Girnius, Ron C.J. Schackmann +15 more

Pathologic and molecular responses to neoadjuvant trastuzumab and/or lapatinib from a phase II randomized trial in HER2-positive breast cancer (TRIO-US B07)

Nature Communications(2020)10.1038/s41467-020-19494-2
Top 9%
2.3DataRank
Top 9%66 citations

Jennifer L. Caswell‐Jin, Katherine McNamara, Jason J. Zoeller, Gregory R. Bean, Robert Dichmann +20 more

Cycling cancer persister cells arise from lineages with distinct programs

Nature(2021)10.1038/s41586-021-03796-6
N/A
0.933DataRank · unranked
502 citations

Michael Tsabar, Michael S. Cuoco, Liat Amir-Zilberstein, Jan-Christian Hütter, Bomiao Hu +18 more

Large-scale Characterization of Drug Responses of Clinically Relevant Proteins in Cancer Cell Lines

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.186908
Top 34%
0.578DataRank
Top 34%10 citations

Jun Li, Mei‐Ju Chen, Zhenlin Ju, Nicole K. Nesser, Katie Johnson-Camacho +20 more

Aging-associated alterations in the mammary gland revealed by single-cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/773408
N/A
0.565DataRank · unranked
12 citations

Hana Shapiro, Christina Tsiobikas, Huidong Chen, G. Kenneth Gray, Yaara Oren +5 more

Phase I/II Study of Combined BCL-xL and MEK Inhibition with Navitoclax and Trametinib in KRAS or NRAS Mutant Advanced Solid Tumors

Clinical Cancer Research(2024)10.1158/1078-0432.ccr-23-3135
N/A
0.546DataRank · unranked
37 citations

T. Khanh, Jeong Eun Kim, James M. Cleary, Aparna R. Parikh, Oladapo Yeku +26 more

Organoid Cultures for the Study of Mammary Biology and Breast Cancer: The Promise and Challenges

Cold Spring Harbor Perspectives in Medicine(2024)10.1101/cshperspect.a041661
N/A
0.416DataRank · unranked
15 citations

Joan S. Brugge, Senthil K. Muthuswamy

Breast organoid suspension cultures maintain long-term estrogen receptor expression and responsiveness

npj Breast Cancer(2024)10.1038/s41523-024-00714-7
N/A
0.406DataRank · unranked
14 citations

Francesca Silvestri, Michael U. J. Oliphant, M. Angie Martinez-Gakidis, Dennis P. Orgill, Judy E. Garber +3 more

Paclitaxel-induced mitotic arrest results in a convergence of apoptotic dependencies that can be safely exploited by BCL-X L degradation to overcome cancer chemoresistance

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.24.661170
N/A
0.373DataRank · unranked
11 citations

Adam Presser, Lissah Johnson, Yusuke Matoba, Brendan Shay, Weiyi Xu +19 more

Brca1 haploinsufficiency promotes early tumor onset and epigenetic alterations in a mouse model of hereditary breast cancer

Nature Genetics(2024)10.1038/s41588-024-01958-6
N/A
0.373DataRank · unranked
11 citations

Anna F. Cordes, Michael U. J. Oliphant, S. Aidan Quinn, Mayura Thomas, Laura M. Selfors +15 more

Cycling cancer persister cells arise from lineages with distinct transcriptional and metabolic programs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.136358
N/A
0.312DataRank · unranked
7 citations

Michael Tsabar, Michael S. Cuoco, Elma Zaganjor, Pratiksha I. Thakore, Marcin Tabaka +9 more

Supplementary Figure from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

(2023)10.1158/2159-8290.22541643
N/A
0.128DataRank · unranked
1 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Author Correction: Brca1 haploinsufficiency promotes early tumor onset and epigenetic alterations in a mouse model of hereditary breast cancer

Nature Genetics(2024)10.1038/s41588-024-02034-9
N/A
0.104DataRank · unranked
1 citations

Anna F. Cordes, Michael U. J. Oliphant, S. Aidan Quinn, Mayura Thomas, Laura M. Selfors +15 more

Supplementary Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

Figshare(2023)10.1158/2159-8290.22541646.v1
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Supplementary Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

(2023)10.1158/2159-8290.22541649
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Clonal populations of a human TNBC model display significant functional heterogeneity and divergent growth dynamics in distinct contexts

Oncogene(2021)10.1038/s41388-021-02075-y
N/A
0DataRank · unranked
9 citations

Sabin Dhakal, Laura M. Selfors, Chandler M. Friend, Tian Zhang, Maurizio Callari +10 more

664P Final results of a phase I/II study of combined BCL-xL and MEK inhibition with navitoclax and trametinib in KRAS or NRAS mutant advanced solid tumors

Annals of Oncology(2023)10.1016/j.annonc.2023.09.1850
N/A
0DataRank · unranked
1 citations

T. Khanh, James M. Cleary, Aparna R. Parikh, Oladapo Yeku, Colin D. Weekes +13 more

885 Characterization of the tumor microenvironment in advanced breast cancer patients treated with talazoparib followed by combination of talazoparib and avelumab

Regular and Young Investigator Award Abstracts(2023)10.1136/jitc-2023-sitc2023.0885
N/A
0DataRank · unranked
1 citations

Filipa Lynce, Xue Geng, Edward T. Richardson, Candace Mainor, Mei Wei +14 more

Supplementary Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

Figshare(2023)10.1158/2159-8290.22541649.v1
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Defining breast epithelial cell types in the single-cell era

Developmental Cell(2025)10.1016/j.devcel.2025.06.032
N/A
0DataRank · unranked
11 citations

Eric G. Carlson, Tatyana Lev, Bailey Marshall, Austin D. Reed, Alex P. Sanchez‐Covarrubias +27 more

Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

(2023)10.1158/2159-8290.c.6549711
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Characterization of Mammary Cells Co‐expressing Separate Lineage Markers

The FASEB Journal(2020)10.1096/fasebj.2020.34.s1.01908
N/A
0DataRank · unranked
0 citations

Carman Man-Chung Li, Christina Tsiobikas, Huidong Chen, Kenneth Gray, Yaara Oren +6 more

Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

(2023)10.1158/2159-8290.c.6549711.v1
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Supplementary Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

(2023)10.1158/2159-8290.22541646
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Supplementary Data from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

Figshare(2023)10.1158/2159-8290.22541652.v1
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Supplementary Figure from AXL and Error-Prone DNA Replication Confer Drug Resistance and Offer Strategies to Treat EGFR-Mutant Lung Cancer

Figshare(2023)10.1158/2159-8290.22541643.v1
N/A
0DataRank · unranked
0 citations

Nishanth Belugali Nataraj, Joo Sang Lee, Benny Zhitomirsky, Yaara Oren, Sara Oster Flayshman +34 more

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing

Cell Reports(2020)10.1016/j.celrep.2020.108566
N/A
0DataRank · unranked
206 citations

Hana Shapiro, Christina Tsiobikas, Laura M. Selfors, Huidong Chen, Jennifer M. Rosenbluth +10 more