Medhat Mahmoud

Also affiliated with Cairo University, Baylor College of Medicine

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.0Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128

Top 4%

4.9DataRank

Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Papers

Driven by 34 papers — median percentile 74. Top paper: “Chromosome-scale, haplotype-resolved assembly of human genomes”.

Chromosome-scale, haplotype-resolved assembly of human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0711-0

N/A

5.3DataRank · unranked

207 citations

Arkarachai Fungtammasan, Mark J. P. Chaisson, Mike Chou, Anthony Schmitt, Xiang Zhou +18 more

Benchmarking challenging small variants with linked and long reads

Cell Genomics(2022)10.1016/j.xgen.2022.100128

Top 4%

4.9DataRank

Top 4%212 citations

Nathan D. Olson, Lindsay Harris, Ziad Khan, Jesse Farek, Medhat Mahmoud +36 more

Beyond the exome: What’s next in diagnostic testing for Mendelian conditions

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.06.009

N/A

2.2DataRank · unranked

123 citations

Chloe Reuter, Shruti Marwaha, Medhat Mahmoud, Michael Duyzend, Hayk Barseghyan +91 more

Benchmarking challenging small variants with linked and long reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.212712

Top 11%

2.0DataRank

Top 11%60 citations

Nathan D. Olson, Lindsay Harris, Jennifer McDaniel, Ziad Khan, Jesse Farek +37 more

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology(2019)10.1038/s41587-019-0217-9

N/A

1.1DataRank · unranked

1912 citations

Paul Peluso, William J. Rowell, Pi-Chuan Chang, Richard J. Hall, Gregory T. Concepcion +24 more

Genomic variant benchmark: if you cannot measure it, you cannot improve it

Genome biology(2023)10.1186/s13059-023-03061-1

Top 20%

1.0DataRank

Top 20%35 citations

Daniel Paiva Agustinho, Chen-Shan Chin, Fritz J. Sedlazeck, Medhat Mahmoud, Sina Majidian

Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

GigaScience(2022)10.1093/gigascience/giac039

Top 33%

0.606DataRank

Top 33%15 citations

Muthuswamy Raveendran, Dustin T. Lyfoung, Fritz J. Sedlazeck, Medhat Mahmoud, Trent M. Prall +9 more

A strategy for building and using a human reference pangenome

F1000Research(2021)10.12688/f1000research.19630.2

N/A

0.533DataRank · unranked

10 citations

Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt +35 more

Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.05.451071

Top 60%

0.248DataRank

Top 60%3 citations

Muthuswamy Raveendran, Dustin T. Lyfoung, Fritz J. Sedlazeck, Medhat Mahmoud, Trent M. Prall +9 more

Fixing reference errors efficiently improves sequencing results

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.18.500506

Top 65%

0.208DataRank

Top 65%3 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission

Genome Research(2021)10.1101/gr.268961.120

N/A

0DataRank · unranked

55 citations

Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang +15 more

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.29.446291

N/A

0DataRank · unranked

4 citations

Medhat Mahmoud, Viginesh Vaibhav Muraliraman, Fritz J. Sedlazeck, Todd J. Treangen, Yilei Fu

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

F1000Research(2021)10.12688/f1000research.51477.2

N/A

0DataRank · unranked

2 citations

Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat +57 more

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

F1000Research(2021)10.12688/f1000research.51477.1

N/A

0DataRank · unranked

3 citations

Medhat Mahmoud, Michael D. Jochum, Daniel Paiva Agustinho, Barry Zorman, Ahmad Al Khleifat +57 more

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment

GigaScience(2021)10.1093/gigascience/giab063

N/A

0DataRank · unranked

29 citations

Medhat Mahmoud, Viginesh Vaibhav Muraliraman, Fritz J. Sedlazeck, Todd J. Treangen, Yilei Fu

Comprehensive Structural Variant Detection: From Mosaic to Population-Level

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487055

N/A

0DataRank · unranked

97 citations

Luis F. Paulin, Christopher M. Grochowski, Dominic W. Horner, Medhat Mahmoud, Sairam Behera +9 more

Intratumoral heterogeneity and clonal evolution induced by HPV integration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.11.503647

N/A

0DataRank · unranked

6 citations

David E. Symer, Medhat Mahmoud, Bo Jiang, Sarah Goodwin, Darawalee Wangsa +8 more

PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation

Genome biology(2021)10.1186/s13059-021-02486-w

N/A

0DataRank · unranked

55 citations

HarshaVardhan Doddapaneni, Winston Timp, Fritz J. Sedlazeck, Medhat Mahmoud

Methods developed during the first National Center for Biotechnology Information Structural Variation Codeathon at Baylor College of Medicine

F1000Research(2020)10.12688/f1000research.23773.1

N/A

0DataRank · unranked

0 citations

Alejandro R. Gener, Michael M. Khayat, Adam C. English, Advait Balaji, Anbo Zhou +41 more

Genome‐Wide Analysis of Structural Variants in Parkinson Disease

Annals of Neurology(2023)10.1002/ana.26608

N/A

0DataRank · unranked

37 citations

Jinhui Ding, Pilar Álvarez Jerez, Anastasia Illarionova, Kristin Levine, Francis P. Grenn +35 more

Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.184481

N/A

0DataRank · unranked

16 citations

Medhat Mahmoud, Michael D. Jochum, Yunxi Liu, R. A. Leo Elworth, Qi Wang +15 more

FixItFelix: improving genomic analysis by fixing reference errors

Genome biology(2023)10.1186/s13059-023-02863-7

N/A

0DataRank · unranked

27 citations

Jonathon LeFaive, Peter Orchard, Medhat Mahmoud, Luis F. Paulin, Jesse Farek +7 more

Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.538128

N/A

0DataRank · unranked

14 citations

Jonathan R. Belyeu, Xiao Chen, Luis F. Paulin, Ngoc Quynh Nguyen, E. Newman +21 more

Beyond the exome: what's next in diagnostic testing for Mendelian conditions

arXiv (Cornell University)(2023)10.48550/arxiv.2301.07363

N/A

0DataRank · unranked

5 citations

Chloe Reuter, Shruti Marwaha, Medhat Mahmoud, Michael Duyzend, Hayk Barseghyan +19 more

Detection of mosaic and population-level structural variants with Sniffles2

Nature Biotechnology(2024)10.1038/s41587-023-02024-y

N/A

0DataRank · unranked

448 citations

Luis F. Paulin, Christopher M. Grochowski, Dominic W. Horner, Medhat Mahmoud, Sairam Behera +9 more

Utility of long-read sequencing for All of Us

Nature Communications(2024)10.1038/s41467-024-44804-3

N/A

0DataRank · unranked

106 citations

Yongqing Huang, Kiran Garimella, Peter A. Audano, W. Wan, Nripesh Prasad +9 more

Inverted triplications formed by iterative template switches generate structural variant diversity at genomic disorder loci

Cell Genomics(2024)10.1016/j.xgen.2024.100590

N/A

0DataRank · unranked

33 citations

Jesse D. Bengtsson, Haowei Du, Mira Gandhi, Ming Yin Lun, Michele G. Mehaffey +22 more

MethPhaser: methylation-based long-read haplotype phasing of human genomes

Nature Communications(2024)10.1038/s41467-024-49588-0

N/A

0DataRank · unranked

22 citations

Sergey Aganezov, Medhat Mahmoud, John Beaulaurier, Sissel Juul, Todd J. Treangen +2 more

Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk

BMC Medical Genomics(2024)10.1186/s12920-024-02024-0

N/A

0DataRank · unranked

10 citations

Jonathan R. Belyeu, Xiao Chen, Luis F. Paulin, Ngoc Quynh Nguyen, Emma Newman +21 more

Leveraging the T2T assembly to resolve rare and pathogenic inversions in reference genome gaps

Genome Research(2024)10.1101/gr.279346.124

N/A

0DataRank · unranked

13 citations

Jesper Eisfeldt, Jesse D. Bengtsson, Ming Yin Lun, Christopher M. Grochowski, Medhat Mahmoud +17 more

Closing the gap: Solving complex medically relevant genes at scale

medRxiv(2024)10.1101/2024.03.14.24304179

N/A

0DataRank · unranked

11 citations

John Harting, Holly Corbitt, Xiao Chen, Shalini N. Jhangiani, HarshaVardhan Doddapaneni +19 more

Mind the gap: the relevance of the genome reference to resolve rare and pathogenic inversions

medRxiv(2024)10.1101/2024.04.22.24305780

N/A

0DataRank · unranked

1 citations

Jesper Eisfeldt, Jesse D. Bengtsson, Ming Yin Lun, Christopher M. Grochowski, Medhat Mahmoud +14 more

Identification of allele-specific KIV-2 repeats and impact on Lp(a) measurements for cardiovascular disease risk

UNC Libraries(2024)10.17615/0jmh-f540

N/A

0DataRank · unranked

0 citations

Michael A. Eberle, Xiao Chen, Richard A. Gibbs, Emma Newman, Massimiliano Rossi +21 more

A Hitchhiker's Guide to long-read genomic analysis

Genome Research(2025)10.1101/gr.279975.124

N/A

0DataRank · unranked

12 citations

Daniel Paiva Agustinho, Fritz J. Sedlazeck, Medhat Mahmoud

Medhat Mahmoud

Indexed papers

Top data-sharing exemplar

Papers