Philip A. Romero

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Investigating the dynamics of microbial consortia in spatially structured environments”.

Investigating the dynamics of microbial consortia in spatially structured environments

Nature Communications(2020)10.1038/s41467-020-16200-0

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0DataRank · unranked

97 citations

Tyler D. Ross, Marcella Gomez, Job L. Grant, Philip A. Romero, Ophelia S. Venturelli +1 more

Inferring Protein Sequence-Function Relationships with Large-Scale Positive-Unlabeled Learning

Cell Systems(2020)10.1016/j.cels.2020.10.007

N/A

0DataRank · unranked

56 citations

Bennett J. Bremer, Emily C. Hinds, Garvesh Raskutti, Philip A. Romero, Hyebin Song

Neural networks to learn protein sequence-function relationships from deep mutational scanning data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.25.353946

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0DataRank · unranked

17 citations

Sarah A. Fahlberg, Pete Heinzelman, Philip A. Romero, Anthony Gitter, Sam Gelman

Discovery of human ACE2 variants with altered recognition by the SARS-CoV-2 spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.17.301861

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0DataRank · unranked

10 citations

Philip A. Romero, Pete Heinzelman

Inferring protein sequence-function relationships with large-scale positive-unlabeled learning

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.19.257642

N/A

0DataRank · unranked

8 citations

Bennett J. Bremer, Emily C. Hinds, Garvesh Raskutti, Philip A. Romero, Hyebin Song

Investigating the dynamics of microbial consortia in spatially structured environments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.17.953240

N/A

0DataRank · unranked

5 citations

Tyler D. Ross, Marcella Gomez, Job L. Grant, Philip A. Romero, Ophelia S. Venturelli +1 more

Neural networks to learn protein sequence–function relationships from deep mutational scanning data

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2104878118

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0DataRank · unranked

179 citations

Sarah A. Fahlberg, Pete Heinzelman, Philip A. Romero, Anthony Gitter, Sam Gelman

Machine learning-guided acyl-ACP reductase engineering for improved in vivo fatty alcohol production

Nature Communications(2021)10.1038/s41467-021-25831-w

N/A

0DataRank · unranked

102 citations

Sarah A. Fahlberg, Brian F. Pfleger, Philip A. Romero, Jonathan C. Greenhalgh

Discovery of human ACE2 variants with altered recognition by the SARS-CoV-2 spike protein

PLoS ONE(2021)10.1371/journal.pone.0251585

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0DataRank · unranked

21 citations

Philip A. Romero, Pete Heinzelman

Yeast surface display-based identification of ACE2 mutations that modulate SARS-CoV-2 spike binding across multiple mammalian species

Protein Engineering Design and Selection(2021)10.1093/protein/gzab035

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0DataRank · unranked

2 citations

Jonathan C. Greenhalgh, Philip A. Romero, Pete Heinzelman

Machine learning-guided acyl-ACP reductase engineering for improved in vivo fatty alcohol production

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.21.445192

N/A

0DataRank · unranked

2 citations

Sarah A. Fahlberg, Brian F. Pfleger, Philip A. Romero, Jonathan C. Greenhalgh

Yeast surface display-based identification of ACE2 mutations that modulate SARS-CoV-2 spike binding across multiple mammalian species

渤海大学学报：哲学社会科学版(2021)10.1101/2021.03.16.435705

N/A

0DataRank · unranked

0 citations

Jonathan C. Greenhalgh, Philip A. Romero, Pete Heinzelman

Microfluidic deep mutational scanning of the human executioner caspases reveals differences in structure and regulation

Cell Death Discovery(2022)10.1038/s41420-021-00799-0

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0DataRank · unranked

15 citations

Philip A. Romero, Hridindu Roychowdhury

Directed evolution of angiotensin-converting enzyme 2 (ACE2) peptidase activity profiles for therapeutic applications

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.03.474817

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0DataRank · unranked

0 citations

Philip A. Romero, Pete Heinzelman

Inferring protein fitness landscapes from laboratory evolution experiments

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010956

N/A

0DataRank · unranked

21 citations

Emily C. Hinds, Chase R. Freschlin, Hyebin Song, Philip A. Romero, Sameer D’Costa

Directed evolution of angiotensin‐converting enzyme 2 peptidase activity profiles for therapeutic applications

Protein Science(2023)10.1002/pro.4597

N/A

0DataRank · unranked

4 citations

Philip A. Romero, Pete Heinzelman

Neural network extrapolation to distant regions of the protein fitness landscape

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.08.566287

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0DataRank · unranked

6 citations

Chase R. Freschlin, Pete Heinzelman, Philip A. Romero, Sarah A. Fahlberg

Self-driving laboratories to autonomously navigate the protein fitness landscape

Nature Chemical Engineering(2024)10.1038/s44286-023-00002-4

N/A

0DataRank · unranked

176 citations

Bennett J. Bremer, Philip A. Romero, Jacob Rapp

Neural network extrapolation to distant regions of the protein fitness landscape

Nature Communications(2024)10.1038/s41467-024-50712-3

N/A

0DataRank · unranked

46 citations

Sarah A. Fahlberg, Pete Heinzelman, Philip A. Romero, Chase R. Freschlin

Biophysics-based protein language models for protein engineering

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.15.585128

N/A

0DataRank · unranked

29 citations

Bryce Johnson, Chase R. Freschlin, Arnav Sharma, Sameer D’Costa, John Peters +3 more

Biophysics-based protein language models for protein engineering

Nature Methods(2025)10.1038/s41592-025-02776-2

N/A

0DataRank · unranked

36 citations

Bryce Johnson, Chase R. Freschlin, Arnav Sharma, Sameer D’Costa, John Peters +3 more

Activation of Angiotensin-Converting Enzyme 2 Mitigates Gastrointestinal Acute Radiation Syndrome

International Journal of Radiation Oncology*Biology*Physics(2025)10.1016/j.ijrobp.2025.09.021

N/A

0DataRank · unranked

1 citations

Austen Nissen, Tracy Gasperetti, Jamie Foeckler, Anne Frei, Rachel Kuehn +6 more

Droplet microfluidic screening to engineer angiotensin-converting enzyme 2 (ACE2) catalytic activity

Journal of Biological Engineering(2025)10.1186/s13036-025-00482-3

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0DataRank · unranked

0 citations

Philip A. Romero, Pete Heinzelman, Evelyn F Okal