Nicholas P. Tatonetti

Also affiliated with Columbia University Irving Medical Center, University of Washington Medical Center, Columbia University

Pharmacology, Toxicology and PharmaceuticsComputer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.0Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records

Scientific Data(2018)10.1038/sdata.2018.273

Top 12%

1.8DataRank

Top 12%53 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Papers

Driven by 66 papers — median percentile 15. Top paper: “Associations between blood type and COVID-19 infection, intubation, and death”.

Associations between blood type and COVID-19 infection, intubation, and death

Nature Communications(2020)10.1038/s41467-020-19623-x

N/A

15.6DataRank · unranked

470 citations

Jason Zucker, Nicholas P. Tatonetti, Michael Zietz

Immune complement and coagulation dysfunction in adverse outcomes of SARS-CoV-2 infection

Nature Medicine(2020)10.1038/s41591-020-1021-2

N/A

9.4DataRank · unranked

369 citations

Phyllis Thangaraj, Cem Meydan, Jonathan Foox, Daniel Butler, Jacob Kim +7 more

Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions

Nature Communications(2021)10.1038/s41467-021-21361-7

N/A

6.5DataRank · unranked

190 citations

Christopher Mozsary, Cem Meydan, Jonathan Foox, Joel Rosiene, Alon Shaiber +74 more

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.048066

N/A

5.1DataRank · unranked

96 citations

Christopher Mozsary, Cem Meydan, David Danko, Jonathan Foox, Joel Rosiene +47 more

Disease Risk Factors Identified Through Shared Genetic Architecture and Electronic Medical Records

Science Translational Medicine(2014)10.1126/scitranslmed.3007191

N/A

2.8DataRank · unranked

57 citations

David J. Ruau, Chirag J. Patel, Susan C. Weber, Rong Chen, Nicholas P. Tatonetti +3 more

Columbia Open Health Data, clinical concept prevalence and co-occurrence from electronic health records

Scientific Data(2018)10.1038/sdata.2018.273

Top 12%

1.8DataRank

Top 12%53 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

TCGA-Reports: A machine-readable pathology report resource for benchmarking text-based AI models

Patterns(2024)10.1016/j.patter.2024.100933

Top 15%

1.4DataRank

Top 15%36 citations

Nicholas P. Tatonetti, Jenna Kefeli

System-wide transcriptome damage and tissue identity loss in COVID-19 patients

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100522

N/A

1.2DataRank · unranked

51 citations

Jonathan Foox, Tyler Hether, David Danko, Sarah Warren, Youngmi Kim +43 more

An integrative method for scoring candidate genes from association studies: application to warfarin dosing

BMC Bioinformatics(2010)10.1186/1471-2105-11-s9-s9

N/A

1.0DataRank · unranked

17 citations

Joel T. Dudley, Hersh Sagreiya, Atul Janardhan Butte, Russ B. Altman, Nicholas P. Tatonetti

ROMOP: a light-weight R package for interfacing with OMOP-formatted electronic health record data

JAMIA Open(2019)10.1093/jamiaopen/ooy059

N/A

0.978DataRank · unranked

13 citations

Boris Oskotsky, Nicholas Giangreco, Phyllis M Thangaraj, Debajyoti Datta, Remi Frazier +7 more

Stimulated Reporting: The Impact of US Food and Drug Administration-Issued Alerts on the Adverse Event Reporting System (FAERS)

Drug Safety(2014)10.1007/s40264-014-0225-0

N/A

0.709DataRank · unranked

112 citations

Andrea R. Demakas, Mo Dimbil, Nicholas P. Tatonetti, Colin B. Erdman, Keith B. Hoffman

Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest

Drug Safety(2014)10.1007/s40264-014-0189-0

N/A

0.590DataRank · unranked

50 citations

Patrick B. Ryan, G. Niklas Norén, Martijn J. Schuemie, Christian Reich, Jon Duke +12 more

OnSIDES (ON-label SIDE effectS resource) Database : Extracting Adverse Drug Events from Drug Labels using Natural Language Processing Models

medRxiv(2024)10.1101/2024.03.22.24304724

Top 33%

0.589DataRank

Top 33%12 citations

Hsin Yi Chen, Pietro Belloni, Undina Gisladottir, Jenna Kefeli, Jason Patterson +7 more

PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model

Bioinformatics(2019)10.1093/bioinformatics/btz409

N/A

0.561DataRank · unranked

41 citations

Boris Oskotsky, Phyllis M Thangaraj, Nicholas Giangreco, Marcus A. Badgeley, Kipp W. Johnson +19 more

OnSIDES database: Extracting adverse drug events from drug labels using natural language processing models

Med(2025)10.1016/j.medj.2025.100642

Top 35%

0.550DataRank

Top 35%16 citations

Hsin Yi Chen, Pietro Belloni, Undina Gisladottir, Jenna Kefeli, Jason Patterson +7 more

A database of pediatric drug effects to evaluate ontogenic mechanisms from child growth and development

Med(2022)10.1016/j.medj.2022.06.001

Top 38%

0.514DataRank

Top 38%13 citations

Nicholas P. Tatonetti, Nicholas Giangreco

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome

medRxiv(2020)10.1101/2020.05.05.20092452

N/A

0.510DataRank · unranked

29 citations

Phyllis Thangaraj, Cem Meydan, Jonathan Foox, Daniel Butler, Ben May +6 more

METHODS TO ENHANCE THE REPRODUCIBILITY OF PRECISION MEDICINE

Biocomputing 2016(2015)10.1142/9789814749411_0017

N/A

0.496DataRank · unranked

6 citations

Chirag J. Patel, Nils Gehlenborg, Nicholas P. Tatonetti, Isaac S. Kohane, John P. A. Ioannidis +1 more

Mural Wnt/β-catenin signaling regulates Lama2 expression to promote neurovascular unit maturation

Development(2022)10.1242/dev.200610

N/A

0.457DataRank · unranked

20 citations

Sanjid Shahriar, Nicholas Giangreco, Panos Arvanitis, Markus Winkler, Nicholas P. Tatonetti +4 more

Heparin treatment is associated with a delayed diagnosis of Alzheimer’s dementia in electronic health records from two large United States health systems

Molecular Psychiatry(2024)10.1038/s41380-024-02757-5

N/A

0.376DataRank · unranked

8 citations

Eyal Klang, Undina Gisladottir, Maxence Vandromme, Li Li, Yakeel T. Quiroz +6 more

Estimating the heritability of SARS-CoV-2 susceptibility and COVID-19 severity

Nature Communications(2024)10.1038/s41467-023-44250-7

N/A

0.360DataRank · unranked

10 citations

Vijendra Ramlall, Michael Zietz, Undina Gisladottir, Nicholas P. Tatonetti, Kathleen LaRow Brown

KG-LIME: predicting individualized risk of adverse drug events for multiple sclerosis disease-modifying therapy

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae155

N/A

0.330DataRank · unranked

8 citations

Nicholas P. Tatonetti, Jason Patterson

Discovering Venom-Derived Drug Candidates Using Differential Gene Expression

Toxins(2023)10.3390/toxins15070451

N/A

0.312DataRank · unranked

7 citations

Hai Li, Tanya Napolitano, Ronald Realubit, Charles Karan, Mandë Holford +2 more

Predictions, Pivots, and a Pandemic: a Review of 2020's Top Translational Bioinformatics Publications

Yearbook of Medical Informatics(2021)10.1055/s-0041-1726540

N/A

0.298DataRank · unranked

4 citations

Mary Lauren Benton, Maryam Tavakoli, Nicholas P. Tatonetti, Scott McGrath, Mitra Tavakoli +1 more

Generalizable and Automated Classification of TNM Stage from Pathology Reports with External Validation

medRxiv(2023)10.1101/2023.06.26.23291912

N/A

0.241DataRank · unranked

4 citations

Nicholas P. Tatonetti, Jenna Kefeli

Pediatric data from the All of Us research program: demonstration of pediatric obesity over time

JAMIA Open(2021)10.1093/jamiaopen/ooab112

Top 70%

0.159DataRank

Top 70%1 citations

Sulieman Lina, Jun Qian, Aymone Kouame, Vignesh Subbian, Eric Boerwinkle +12 more

Session Introduction: TOWARDS ETHICAL BIOMEDICAL INFORMATICS: LEARNING FROM OLELO NOEAU, HAWAIIAN PROVERBS

PubMed(2022)10.1142/9789811270611_0042

N/A

0.104DataRank · unranked

1 citations

Noelani Puniwai, Martina Kamaka, Gamze Gürsoy, Nicholas P. Tatonetti, Steven E. Brenner +2 more

Plasma kallikrein predicts primary graft dysfunction after heart transplant

The Journal of Heart and Lung Transplantation(2021)10.1016/j.healun.2021.07.001

N/A

0DataRank · unranked

23 citations

Guillaume Lebreton, Susan Restaino, Mary Jane Farr, Emmanuel Zorn, P.C. Colombo +9 more

Rapid Identification and Phenotyping of Nonalcoholic Fatty Liver Disease Patients Using an Algorithmic Approach in Diverse, Urban Healthcare Systems

medRxiv(2021)10.1101/2021.04.27.21256139

N/A

0DataRank · unranked

0 citations

Anurag Verma, Leigh Anne Tang, Marina Serper, Andrew Scanga, Ava Farrell +11 more

Predicting the Toxicity of Druggable Proteins to Human Tissues

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.07.471637

N/A

0DataRank · unranked

0 citations

Phyllis Thangaraj, Nicholas P. Tatonetti, Yun Hao

Deep learning on time series laboratory test results from electronic health records for early detection of pancreatic cancer

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104095

N/A

0DataRank · unranked

40 citations

Michael G. Artin, Eunah Lee, Yoanna S Pumpalova, Myles Ingram, Benjamin May +4 more

5-year data set: single concept count

Figshare(2018)10.6084/m9.figshare.6731318

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Lifetime dataset: single concept deviations

Figshare(2018)10.6084/m9.figshare.7148078

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Structured deep embedding model to generate composite clinical indices from electronic health records for early detection of pancreatic cancer

Patterns(2022)10.1016/j.patter.2022.100636

N/A

0DataRank · unranked

8 citations

Michael G. Artin, Eunah Lee, Benjamin May, Michael Park, Chin Hur +2 more

Alterations in the kallikrein-kinin system predict death after heart transplant

Scientific Reports(2022)10.1038/s41598-022-18573-2

N/A

0DataRank · unranked

6 citations

Guillaume Lebreton, Susan Restaino, Maryjane Farr, Emmanuel Zorn, P.C. Colombo +7 more

Snapshots of nascent RNA reveal cell- and stimulus-specific responses to acute kidney injury

JCI Insight(2022)10.1172/jci.insight.146374

N/A

0DataRank · unranked

6 citations

Jacob Stauber, Katherine Xu, Alexandra Jacunski, Neal Paragas, Miriam Callahan +22 more

Deep learning on time series laboratory test results from electronic health records for early detection of pancreatic cancer.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.e16268

N/A

0DataRank · unranked

0 citations

Michael G. Artin, Eunah Lee, Yoanna S Pumpalova, Myles Ingram, Benjamin May +4 more

Inborn Errors of Immunity Contribute to the Burden of Skin Disease and Create Opportunities for Improving the Practice of Dermatology

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.08.018

N/A

0DataRank · unranked

3 citations

Soundos Youssef, Heeju Noh, J G Wright, Ghislaine Jumonville, Kathleen LaRow Brown +6 more

Using machine learning probabilities to identify effects of COVID-19

Patterns(2023)10.1016/j.patter.2023.100889

N/A

0DataRank · unranked

1 citations

Undina Gisladottir, Jenna Kefeli, Yutaro Tanaka, Benjamin May, Nicholas P. Tatonetti +1 more

SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients

PubMed(2023)10.1142/9789811286421_0008

N/A

0DataRank · unranked

16 citations

Xi Li, Jui-Hsuan Chang, Nicholas P. Tatonetti, Dan Theodorescu, Yong Chen +4 more

5-year dataset: single concept deviations

Figshare(2018)10.6084/m9.figshare.7148081

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Generalizable and automated classification of TNM stage from pathology reports with external validation

Nature Communications(2024)10.1038/s41467-024-53190-9

N/A

0DataRank · unranked

22 citations

Jacob Berkowitz, Jose Miguel Acitores Cortina, Kevin K. Tsang, Nicholas P. Tatonetti, Jenna Kefeli

Concepts

Figshare(2018)10.6084/m9.figshare.6731312

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Rapid identification and phenotyping of nonalcoholic fatty liver disease patients using a machine‐based approach in diverse healthcare systems

Clinical and Translational Science(2024)10.1111/cts.70105

N/A

0DataRank · unranked

3 citations

Anurag Verma, Leigh Anne Tang, Marina Serper, Andrew Scanga, Ava Farrell +11 more

Lifetime data set: single concept count

Figshare(2018)10.6084/m9.figshare.6731315

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Biomedical Text Normalization through Generative Modeling

medRxiv(2024)10.1101/2024.09.30.24314663

N/A

0DataRank · unranked

1 citations

Apoorva Srinivasan, Jose Miguel Acitores Cortina, Yasaman Fatapour, Nicholas P. Tatonetti, Jacob Berkowitz

Assessing racial differences in time to subsequent treatment following androgen deprivation therapy among Veterans with prostate cancer

Research Square(2024)10.21203/rs.3.rs-5001707/v1

N/A

0DataRank · unranked

1 citations

Jessica L. Janes, Joshua Parrish, Amanda M. De Hoedt, Janis Pruett, Mark Fallick +5 more

Race and association between ADT and adverse events.

Journal of Clinical Oncology(2024)10.1200/jco.2024.42.16_suppl.5073

N/A

0DataRank · unranked

0 citations

Jessica L. Janes, Joshua Parrish, Amanda Marie De Hoedt, Nicholas P. Tatonetti, Stephen J. Freedland +1 more

Clinical Data: Sources and Types, Regulatory Constraints, Applications

UNC Libraries(2024)10.17615/a2ht-zp91

N/A

0DataRank · unranked

0 citations

Stanley C. Ahalt, Gustavo Glusman, Emily Pfaff, Peter N. Robinson, The Biomedical Data Translator Consortium +8 more

WebGWAS: A web server for instant GWAS on arbitrary phenotypes

medRxiv(2024)10.1101/2024.12.11.24318870

N/A

0DataRank · unranked

0 citations

Undina Gisladottir, Kathleen LaRow Brown, Nicholas P. Tatonetti, Michael Zietz

Enhancing EHR-based pancreatic cancer prediction with LLM-derived embeddings

npj Digital Medicine(2025)10.1038/s41746-025-01869-8

N/A

0DataRank · unranked

10 citations

Jason Patterson, Jose M. Acitores Cortina, Tian Gu, Chin Hur, Nicholas P. Tatonetti +1 more

5-year data set: paired concept counts

Figshare(2018)10.6084/m9.figshare.6731309

Top 100%

0DataRank

Top 100%0 citations

Michel J. Dumontier, George Hripcsak, Nicholas P. Tatonetti, Chunhua Weng, Casey Ta

Assessing racial differences in time to subsequent treatment following androgen deprivation therapy among Veterans with prostate cancer

Prostate Cancer and Prostatic Diseases(2025)10.1038/s41391-025-00995-4

N/A

0DataRank · unranked

1 citations

Jessica L. Janes, Joshua Parrish, Amanda M. De Hoedt, Janis Pruett, Mark Fallick +5 more

Pediatric Developmental Safety Assessment: Are We Ready for the Next Thalidomide?

Clinical Pharmacology & Therapeutics(2025)10.1002/cpt.70148

N/A

0DataRank · unranked

1 citations

Susan M. Abdel‐Rahman, Gelareh Abulwerdi, Sherbet Samuels, Rebecca Racz, Mohamed Mohamoud +2 more

The polygenic architecture of hidradenitis suppurativa reveals signaling mechanisms that implicate epithelial remodeling

medRxiv(2025)10.1101/2025.07.25.25332168

N/A

0DataRank · unranked

4 citations

Poppy A. Gould, Yiming Luo, Errol P. Prens, Lee Wheless, Adriana M. Hung +47 more

Probing Large Language Model Hidden States for Adverse Drug Reaction Knowledge

medRxiv(2025)10.1101/2025.02.09.25321620

N/A

0DataRank · unranked

2 citations

Davy Weissenbacher, Apoorva Srinivasan, Nadine A. Friedrich, Jose Miguel Acitores Cortina, Sophia Kivelson +3 more

Cell-type specific single-cell signatures reveal nephrotoxic drug effects

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.11.012

N/A

0DataRank · unranked

0 citations

Jose Miguel Acitores Cortina, Hongyu Liu, Yasaman Fatapour, Jacob Berkowitz, Nicholas P. Tatonetti +1 more

Racial Differences in Adverse Events After Androgen Deprivation in Veterans With Prostate Cancer

JAMA Network Open(2025)10.1001/jamanetworkopen.2025.45705

N/A

0DataRank · unranked

0 citations

Jessica L. Janes, Joshua Parrish, Amanda M. De Hoedt, Kiranbir Josan, Nicholas P. Tatonetti +2 more

Testing the association between blood type and COVID-19 infection, intubation, and death

medRxiv(2020)10.1101/2020.04.08.20058073

N/A

0DataRank · unranked

263 citations

Jason Zucker, Nicholas P. Tatonetti, Michael Zietz

Repurposing the atypical antidepressant trazodone for atherosclerotic cardiovascular disease

Research Square(2021)10.21203/rs.3.rs-567817/v1

N/A

0DataRank · unranked

0 citations

Jagat Narula, Khader Shameer, Farhan Chaudhry, Alexandre Yahi, Nayaab Khan +38 more

Melatonin is significantly associated with survival of intubated COVID-19 patients

育種学研究(2020)10.1101/2020.10.15.20213546

N/A

0DataRank · unranked

57 citations

Jason Zucker, Nicholas P. Tatonetti, Vijendra Ramlall

Predicting Phenotypic Polymyxin Resistance in Klebsiella pneumoniae through Machine Learning Analysis of Genomic Data

mSystems(2020)10.1128/msystems.00656-19

N/A

0DataRank · unranked

71 citations

Oliver J. Bear Don’t Walk, Itsik Pe’er, Nicholas P. Tatonetti, Anton Y. Peleg, Anne‐Catrin Uhlemann +1 more

Identification of Immune complement function as a determinant of adverse SARS-CoV-2 infection outcome

Research Square (Research Square)(2020)10.21203/rs.3.rs-26451/v1

N/A

0DataRank · unranked

12 citations

Phyllis M. Thangara, Nicholas P. Tatonetti, Sagi Shapira, Vijendra Ramlall

EdiTyper: a high-throughput tool for analysis of targeted sequencing data from genome editing experiments

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.30.229088

N/A

0DataRank · unranked

2 citations

Paul Hoffman, Margot Brandt, Pejman Mohammadi, Nicholas P. Tatonetti, Tuuli Lappalainen +1 more

Transfer learning from simulations improves the classification of OCT images of glandular epithelia

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.26.355180

N/A

0DataRank · unranked

0 citations

Han Truong, Elisabeth R. Silver, Charles J. Lightdale, Chin Hur, Nicholas P. Tatonetti +1 more

Erratum to: The Weber Effect and the United States Food and Drug Administration’s Adverse Event Reporting System (FAERS): Analysis of Sixty-Two Drugs Approved from 2006 to 2010

Drug Safety(2014)10.1007/s40264-014-0159-6

N/A

0DataRank · unranked

0 citations

Mo Dimbil, Colin B. Erdman, Nicholas P. Tatonetti, Brian M. Overstreet, Keith B. Hoffman

Nicholas P. Tatonetti

Indexed papers

Top data-sharing exemplar

Papers