🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yang Zhang

National University of Singapore

ORCID: 0000-0002-2739-1916

Also affiliated with National University Cancer Institute, Singapore

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
5.7Author DataRank

Indexed papers

7in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

BioLiP2: an updated structure database for biologically relevant ligand–protein interactions

Nucleic Acids Research(2023)10.1093/nar/gkad630
Top 7%
3.0DataRank
Top 7%140 citations

Xi Zhang, Lydia Freddolino, Yang Zhang, Chengxin Zhang

Papers

Driven by 54 papers — median percentile 72. Top paper: “BioLiP2: an updated structure database for biologically relevant ligand–protein interactions”.

BioLiP2: an updated structure database for biologically relevant ligand–protein interactions

Nucleic Acids Research(2023)10.1093/nar/gkad630
Top 7%
3.0DataRank
Top 7%140 citations

Xi Zhang, Lydia Freddolino, Yang Zhang, Chengxin Zhang

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

PLOS Computational Biology(2019)10.1371/journal.pcbi.1007411
N/A
2.2DataRank · unranked
57 citations

Qiqige Wuyun, Yang Li, S. M. Mortuza, Chengxin Zhang, Robin Pearce +3 more

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00359
Top 19%
1.0DataRank
Top 19%27 citations

Wei Zheng, Micah Cheng, Gilbert S. Omenn, Peter L. Freddolino, Yang Zhang +1 more

ADDRESS: A Database of Disease-associated Human Variants Incorporating Protein Structure and Folding Stabilities

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166840
Top 25%
0.814DataRank
Top 25%27 citations

Chengxin Zhang, Yang Zhang, Jaie Woodard

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168021
Top 31%
0.630DataRank
Top 31%22 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

PRMT5 inhibition drives therapeutic vulnerability to combination treatment with BCL-2 inhibition in mantle cell lymphoma

Blood Advances(2023)10.1182/bloodadvances.2023009906
N/A
0.607DataRank · unranked
16 citations

Inah Hwang, Shelby Sloan, Claire Hinterschied, JoBeth Helmig-Mason, Mackenzie Long +19 more

Architecture of the outbred brown fat proteome defines regulators of metabolic physiology

Cell(2022)10.1016/j.cell.2022.10.003
N/A
0.553DataRank · unranked
39 citations

Luiz H. M. Bozi, Yizhi Sun, Christopher L. Riley, Vivek M. Philip, Mandy Chen +41 more

De novo protein fold design through sequence-independent fragment assembly simulations

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2208275120
N/A
0.416DataRank · unranked
15 citations

Xiaoqiang Huang, Gilbert S. Omenn, Yang Zhang, Robin Pearce

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.518550
Top 63%
0.216DataRank
Top 63%3 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

Combined α- and β-adrenergic receptor activation triggers thermogenesis by the futile creatine cycle

Research Square(2022)10.21203/rs.3.rs-1190032/v1
N/A
0.165DataRank · unranked
2 citations

Janane F. Rahbani, Charlotte Scholtes, Damien Lagarde, Mohammed F. Hussain, Anna Roesler +27 more

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.21.440788
N/A
0.104DataRank · unranked
1 citations

Amit S. Pithadia, Hanna Trzeciakiewicz, Emily V. Crowley, Regina Pacitto, Nathaniel Safren +7 more

Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions

Nature Communications(2021)10.1038/s41467-021-25316-w
N/A
0DataRank · unranked
94 citations

Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Yang Zhang +1 more

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008865
N/A
0DataRank · unranked
84 citations

Chengxin Zhang, Eric W. Bell, Wei Zheng, Xiaogen Zhou, Dong‐Jun Yu +2 more

Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26193
N/A
0DataRank · unranked
63 citations

Yang Li, Chengxin Zhang, Xiaogen Zhou, Robin Pearce, Eric W. Bell +3 more

Endoplasmic reticulum–associated degradation is required for nephrin maturation and kidney glomerular filtration function

Journal of Clinical Investigation(2021)10.1172/jci143988
N/A
0DataRank · unranked
62 citations

Xiaoqiong Wei, Gensheng Zhang, Christopher L. O’Connor, Mauricio Torres, Zhangsen Zhou +19 more

Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2110828118
N/A
0DataRank · unranked
27 citations

Wei Zheng, Kang Ning, Yang Zhang, Pengshuo Yang

Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26211
N/A
0DataRank · unranked
23 citations

Chengxin Zhang, Wei Zheng, Xiaogen Zhou, Eric W. Bell, Dong‐Jun Yu +2 more

Integrating Multimeric Threading With High-throughput Experiments for Structural Interactome of Escherichia coli

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166944
N/A
0DataRank · unranked
16 citations

Aysam Guerler, Chengxin Zhang, Elisa Warner, Chunhua Li, Yang Zhang +1 more

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009370
N/A
0DataRank · unranked
9 citations

Wei Zheng, Yang Zhang, Jaie Woodard

Identification of 13 Guanidinobenzoyl- or Aminidinobenzoyl-Containing Drugs to Potentially Inhibit TMPRSS2 for COVID-19 Treatment

International Journal of Molecular Sciences(2021)10.3390/ijms22137060
N/A
0DataRank · unranked
18 citations

Robin Pearce, Gilbert S. Omenn, Yang Zhang, Xiaoqiang Huang

GPU-I-TASSER: a GPU accelerated I-TASSER protein structure prediction tool

Bioinformatics(2021)10.1093/bioinformatics/btab871
N/A
0DataRank · unranked
18 citations

Chengxin Zhang, Yang Zhang, Dukka B. KC, Elijah MacCarthy

Hop2 interacts with the transcription factor CEBPα and suppresses adipocyte differentiation

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101264
N/A
0DataRank · unranked
8 citations

Yang Zhang, Tingting Zhang, Rita A. Steckler, Xiangli Yang, Tonghui Lin

Evolution of a chordate-specific mechanism for myoblast fusion

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.24.453587
N/A
0DataRank · unranked
8 citations

Renjie Shang, Kwantae Kim, Wei Zheng, Christopher J. Johnson, Lei Sun +21 more

Evolution of myoglobin in avian lineages: positive selection for aggregation resistance in penguins and high purifying selection in galliforms

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.26.433090
N/A
0DataRank · unranked
1 citations

Wei Zheng, Chengxin Zhang, Yang Zhang, Syed M. Rizvi

I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction

Nature Protocols(2022)10.1038/s41596-022-00728-0
N/A
0DataRank · unranked
518 citations

Wei Zheng, Yang Li, Robin Pearce, Chengxin Zhang, Eric W. Bell +3 more

CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks

Nature Methods(2022)10.1038/s41592-021-01389-9
N/A
0DataRank · unranked
76 citations

Biao Zhang, Lydia Freddolino, Yang Zhang, Xi Zhang

Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010793
N/A
0DataRank · unranked
70 citations

Chengxin Zhang, Dong‐Jun Yu, Yang Zhang, Yiheng Zhu

Progressive assembly of multi-domain protein structures from cryo-EM density maps

Nature Computational Science(2022)10.1038/s43588-022-00232-1
N/A
0DataRank · unranked
69 citations

Yang Li, Chengxin Zhang, Wei Zheng, Guijun Zhang, Yang Zhang +1 more

PEPPI: Whole-proteome Protein-protein Interaction Prediction through Structure and Sequence Similarity, Functional Association, and Machine Learning

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167530
N/A
0DataRank · unranked
64 citations

Jacob H. Schwartz, Lydia Freddolino, Yang Zhang, Eric W. Bell

rMSA: A Sequence Search and Alignment Algorithm to Improve RNA Structure Modeling

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167904
N/A
0DataRank · unranked
56 citations

Yang Zhang, Anna Marie Pyle, Chengxin Zhang

Extensive translation of circular RNAs driven by N6-methyladenosine

UNC Libraries(2020)10.17615/etc3-k089
N/A
0DataRank · unranked
93 citations

Ping Wu, Yi Yang, Yang Zhang, Yongfeng Jin, Xiaojuan Fan +8 more

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation

Nucleic Acids Research(2022)10.1093/nar/gkac248
N/A
0DataRank · unranked
41 citations

Qiqige Wuyun, Xiaogen Zhou, Yang Li, Lydia Freddolino, Yang Zhang +1 more

DEMO2: Assemble multi-domain protein structures by coupling analogous template alignments with deep-learning inter-domain restraint prediction

Nucleic Acids Research(2022)10.1093/nar/gkac340
N/A
0DataRank · unranked
25 citations

Chunxiang Peng, Wei Zheng, Yang Li, Guijun Zhang, Yang Zhang +1 more

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

Cellular and Molecular Life Sciences(2022)10.1007/s00018-022-04170-z
N/A
0DataRank · unranked
21 citations

Hanna Trzeciakiewicz, Amit S. Pithadia, Emily V. Crowley, Regina Pacitto, Nathaniel Safren +8 more

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.03.001
N/A
0DataRank · unranked
11 citations

Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong‐Jun Yu +2 more

MESH1 knockdown triggers proliferation arrest through TAZ repression

Cell Death and Disease(2022)10.1038/s41419-022-04663-6
N/A
0DataRank · unranked
10 citations

Chien‐Kuang Cornelia Ding, Yuning Zhang, Yang Zhang, Chao‐Chieh Lin, Jianli Wu +9 more

Prediction value of the genetic risk of type 2 diabetes on the amnestic mild cognitive impairment conversion to Alzheimer’s disease

Frontiers in Aging Neuroscience(2022)10.3389/fnagi.2022.964463
N/A
0DataRank · unranked
7 citations

Zirui Wang, Yumeng Fu, Jiayuan Xu, Yang Zhang, Wen Qin +2 more

Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction

Nature Communications(2023)10.1038/s41467-023-41303-9
N/A
0DataRank · unranked
106 citations

Chengxin Zhang, Chenjie Feng, Robin Pearce, Lydia Freddolino, Yang Zhang +1 more

Integrating deep learning, threading alignments, and a multi‐MSA strategy for high‐quality protein monomer and complex structure prediction in CASP15

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26585
N/A
0DataRank · unranked
65 citations

Qiqige Wuyun, Lydia Freddolino, Yang Zhang, Wei Zheng

PAX3-FOXO1 dictates myogenic reprogramming and rhabdomyosarcoma identity in endothelial progenitors

Nature Communications(2023)10.1038/s41467-023-43044-1
N/A
0DataRank · unranked
34 citations

Randolph K. Larsen, Bradley T. Stevens, Yang Zhang, Hongjian Jin, Catherine J. Drummond +16 more

Knockout of protein phosphatase 1 in Leishmania major reveals its role during RNA polymerase II transcription termination

Nucleic Acids Research(2023)10.1093/nar/gkad394
N/A
0DataRank · unranked
20 citations

Yang Zhang, Haidong Yan, Robert J. Schmitz, Robert Sabatini, Rudo Kieft

Generation of Brown Fat-Specific Knockout Mice Using a Combined Cre-LoxP, CRISPR-Cas9, and Adeno-Associated Virus Single-Guide RNA System

Journal of Visualized Experiments(2023)10.3791/65083
N/A
0DataRank · unranked
6 citations

Yang Zhang, Yu‐Hua Tseng, Tadataka Tsuji

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

Nature Methods(2024)10.1038/s41592-023-02130-4
N/A
0DataRank · unranked
130 citations

Qiqige Wuyun, Yang Li, Chengxin Zhang, Lydia Freddolino, Yang Zhang +1 more

Fast and accurate Ab Initio Protein structure prediction using deep learning potentials

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010539
N/A
0DataRank · unranked
41 citations

Yang Li, Gilbert S. Omenn, Yang Zhang, Robin Pearce

Virtual Screening of Human Class-A GPCRs Using Ligand Profiles Built on Multiple Ligand–Receptor Interactions

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.07.003
N/A
0DataRank · unranked
26 citations

Yang Zhang, Wallace Chan

Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons

Bioinformatics(2020)10.1093/bioinformatics/btaa548
N/A
0DataRank · unranked
17 citations

Chengxin Zhang, Lydia Freddolino, Yang Zhang, Xiaoqiong Wei

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00717
N/A
0DataRank · unranked
35 citations

Chengxin Zhang, Robin Pearce, Gilbert S. Omenn, Yang Zhang, Xiaoqiang Huang

A New Protocol for Atomic-Level Protein Structure Modeling and Refinement Using Low-to-Medium Resolution Cryo-EM Density Maps

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.07.027
N/A
0DataRank · unranked
24 citations

Xi Zhang, Robin Pearce, Hong‐Bin Shen, Yang Zhang, Biao Zhang

Engineered ACE2 receptor traps potently neutralize SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.31.231746
N/A
0DataRank · unranked
38 citations

Jeff E. Glasgow, Daniel Limonta, Paige Solomon, Irene Lui, Yang Zhang +15 more

Publisher Correction: Cryo-EM structure of the human MLL1 core complex bound to the nucleosome

Nature Communications(2020)10.1038/s41467-020-14973-y
Top 100%
0DataRank
Top 100%0 citations

Alex Ayoub, Young‐Tae Lee, Jing Xu, Hanseong Kim, Wei Zheng +9 more

Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.15.341461
N/A
0DataRank · unranked
0 citations

Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Syed M. Rizvi

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89
N/A
0DataRank · unranked
0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100014
N/A
0DataRank · unranked
590 citations

Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang +1 more

Deep learning techniques have significantly impacted protein structure prediction and protein design

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.01.007
N/A
0DataRank · unranked
130 citations

Yang Zhang, Robin Pearce