Jacob E. Lemieux

Also affiliated with Harvard University, Massachusetts General Hospital, Massachusetts Institute of Technology

MedicineImmunology and MicrobiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 50 papers. Top paper: “Defining the risk of SARS-CoV-2 variants on immune protection”.

Defining the risk of SARS-CoV-2 variants on immune protection

Nature(2022)10.1038/s41586-022-04690-5

N/A

4.9DataRank · unranked

185 citations

Elodie Ghedin, Matthew B. Frieman, Florian Krammer, Alba Grifoni, Arghavan Alisoltani +95 more

Duration of viral shedding and culture positivity with postvaccination SARS-CoV-2 delta variant infections

JCI Insight(2021)10.1172/jci.insight.155483

N/A

0.609DataRank · unranked

57 citations

Julie Boucau, Rebecca F. Gilbert, Rockib Uddin, Jonathan Luu, Sebastien Haneuse +15 more

Powassan Virus Neuropathology and Genomic Diversity in Patients With Fatal Encephalitis

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa392

N/A

0.546DataRank · unranked

37 citations

Isaac H. Solomon, Siavash Zamirpour, Jacob E. Lemieux, Catherine A. Freije, Shibani S. Mukerji +5 more

Detection of Borrelia burgdorferi Cell-free DNA in Human Plasma Samples for Improved Diagnosis of Early Lyme Borreliosis

Clinical Infectious Diseases(2020)10.1093/cid/ciaa858

N/A

0.529DataRank · unranked

33 citations

Jacob E. Lemieux, Lily Blair, Asim A. Ahmed, David K. Hong, Sivan Bercovici +8 more

Babesia microti Variant With Multiple Resistance Mutations Detected in an Immunocompromised Patient Receiving Atovaquone Prophylaxis

Open Forum Infectious Diseases(2023)10.1093/ofid/ofad097

N/A

0.434DataRank · unranked

17 citations

Erik H. Klontz, Gordon Adams, Samuel R Schnittman, Nicolas C. Issa, Sheila A. Bond +3 more

Preferential expansion upon boosting of cross-reactive “pre-existing” switched memory B cells that recognize the SARS-CoV-2 Omicron variant Spike protein

medRxiv(2022)10.1101/2021.12.30.21268554

N/A

0.345DataRank · unranked

9 citations

Hang Liu, Jared Feldman, Blake M. Hauser, Catherine Jacob-Dolan, Anusha Nathan +20 more

The 2022 RSV surge was driven by multiple viral lineages

medRxiv(2023)10.1101/2023.01.04.23284195

N/A

0.330DataRank · unranked

8 citations

Gage K. Moreno, Brittany A. Petros, Rockib Uddin, Zoe Levine, Ben Kotzen +17 more

Preliminary clinical performance of a Cas13a-based lateral flow assay for detecting Neisseria gonorrhoeae in urine specimens

mSphere(2024)10.1128/msphere.00677-24

N/A

0.312DataRank · unranked

7 citations

Gordon Adams, Gabriela Sanders, Palak Shah, Kumar Ramesh, Jana Jarolimova +6 more

SARS-CoV-2 virologic rebound with nirmatrelvir-ritonavir therapy

medRxiv(2023)10.1101/2023.06.23.23288598

N/A

0.269DataRank · unranked

5 citations

Julie Boucau, Rockib Uddin, Caitlin Marino, May Y. Liew, Mamadou Barry +17 more

Anamnestic Humoral Correlates of Immunity Across SARS-CoV-2 Variants of Concern

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.19.496718

N/A

0.241DataRank · unranked

4 citations

Jenny S. Maron, Harry L. Bertera, Julie Boucau, Vicky Roy, Amy K. Barczak +9 more

Enhanced virus detection and metagenomic sequencing in patients with meningitis and encephalitis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.25.399394

N/A

0.230DataRank · unranked

2 citations

Shibani S. Mukerji, Simon Ye, Michael J. Leone, Lisa M. Freimark, Daniel Park +16 more

US National Institutes of Health Prioritization of SARS-CoV-2 Variants

Emerging infectious diseases(2023)10.3201/eid2905.221646

N/A

0.208DataRank · unranked

3 citations

Arghavan Alisoltani, Debbie Bratt, Liel Cohen-Lavi, Bethany L. Dearlove, Christian Drosten +29 more

Wider recognition and greater understanding of postinfectious, antibiotic-refractory Lyme arthritis

Journal of Clinical Investigation(2024)10.1172/jci184109

N/A

0.208DataRank · unranked

3 citations

Jacob E. Lemieux, Allen C. Steere

Streamlined CRISPR-based assays for detection and subtyping of avian influenza

medRxiv(2025)10.1101/2025.08.21.25334105

N/A

0.165DataRank · unranked

2 citations

Andrew Guo, Gordon Adams, Jacob E. Lemieux, Cameron Myhrvold, Yujia Huang

Vaccine breakthrough infection leads to distinct profiles of neutralizing antibody responses by SARS-CoV-2 variant

JCI Insight(2022)10.1172/jci.insight.159944

N/A

0DataRank · unranked

30 citations

Mark J. Siedner, Julie Boucau, Christy L. Lavine, Fadi Ghantous, May Y. Liew +24 more

Vaccine Breakthrough Infection with the SARS-CoV-2 Delta or Omicron (BA.1) Variant Leads to Distinct Profiles of Neutralizing Antibody Responses

medRxiv(2022)10.1101/2022.03.02.22271731

N/A

0DataRank · unranked

23 citations

Mark J. Siedner, Julie Boucau, Christy L. Lavine, Fadi Ghantous, May Y. Liew +24 more

SARS-CoV-2 Virologic Rebound With Nirmatrelvir–Ritonavir Therapy

Annals of Internal Medicine(2023)10.7326/m23-1756

N/A

0DataRank · unranked

73 citations

Julie Boucau, Rockib Uddin, Caitlin Marino, May Y. Liew, Mamadou Barry +17 more

Development of Cas13a-based assays for Neisseria gonorrhoeae detection and gyrase A determination

mSphere(2023)10.1128/msphere.00416-23

N/A

0DataRank · unranked

26 citations

Palak Shah, Gordon Adams, John A. Branda, Jeffrey D. Klausner, Robert H. Goldstein +3 more

Neuropathological features of SARS-CoV-2 delta and omicron variants

Journal of Neuropathology & Experimental Neurology(2023)10.1093/jnen/nlad015

N/A

0DataRank · unranked

20 citations

Navid Valizadeh, Emily A. Rudmann, Rockib Uddin, Sabrina T. Dobbins, Bronwyn MacInnis +7 more

Anamnestic humoral correlates of immunity across SARS-CoV-2 variants of concern

mBio(2023)10.1128/mbio.00902-23

N/A

0DataRank · unranked

15 citations

Jenny S. Maron, Julie Boucau, Vicky Roy, Nicholas E. Webb, Harry L. Bertera +15 more

SARS-CoV-2 Viral Clearance and Evolution Varies by Extent of Immunodeficiency

medRxiv(2023)10.1101/2023.07.31.23293441

N/A

0DataRank · unranked

11 citations

Manish C. Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel +28 more

Development of Cas13a-based Assays for Neisseria gonorrhoeae Detection and Gyrase A Determination

medRxiv(2023)10.1101/2023.05.21.23290304

N/A

0DataRank · unranked

1 citations

Palak Shah, Gordon Adams, John A. Branda, Jeffrey D. Klausner, Robert H. Goldstein +3 more

SARS-CoV-2 viral clearance and evolution varies by type and severity of immunodeficiency

Science Translational Medicine(2024)10.1126/scitranslmed.adk1599

N/A

0DataRank · unranked

98 citations

Manish C. Choudhary, James Regan, Julie Boucau, Anusha Nathan, Tessa Speidel +28 more

Emerging SARS-CoV-2 Resistance After Antiviral Treatment

JAMA Network Open(2024)10.1001/jamanetworkopen.2024.35431

N/A

0DataRank · unranked

45 citations

Manish C. Choudhary, Rinki Deo, Fizah Yousuf, A. Gomez, Gregory E. Edelstein +23 more

Auto-Abs neutralizing type I IFNs in patients with severe Powassan, Usutu, or Ross River virus disease

The Journal of Experimental Medicine(2024)10.1084/jem.20240942

N/A

0DataRank · unranked

32 citations

Paul Bastard, Lucy Bizien, Céline Delifer, Pierre Tiberghien, Chaturaka Rodrigo +33 more

Analysis of the Borreliaceae Pangenome Reveals a Distinct Genomic Architecture Conserved Across Phylogenetic Scales

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae256

N/A

0DataRank · unranked

3 citations

Jacob E. Lemieux

Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.613000

N/A

0DataRank · unranked

2 citations

Ruy M. Ribeiro, Gregory E. Edelstein, Julie Boucau, Rockib Uddin, Caitlin Marino +20 more

Clinical Performance of Cas13a-based Point-of-Care Lateral Flow Assay for Detecting Neisseria gonorrhoeae

medRxiv(2024)10.1101/2024.03.01.24303603

N/A

0DataRank · unranked

1 citations

Gabriela Sanders, Palak Shah, Gordon Adams, Jana Jarolimova, Kevin L. Ard +5 more

Analysis of the Borreliaceae Pangenome Reveals a Conserved Genomic Archictecture Across Phylogenetic Scales

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574540

N/A

0DataRank · unranked

0 citations

Jacob E. Lemieux

Cross-neutralization of distant coronaviruses correlates with Spike S2-specific antibodies from immunocompetent and immunocompromised vaccinated SARS-CoV-2-infected patients

Research Square(2024)10.21203/rs.3.rs-5487774/v1

N/A

0DataRank · unranked

0 citations

Brooke M. Leeman, Patricia J. Botros, Joanna Folta, Dhiman Shahid, Anya I. Rocque +27 more

Computationally designed proteins mimic antibody immune evasion in viral evolution

Immunity(2025)10.1016/j.immuni.2025.04.015

N/A

0DataRank · unranked

20 citations

Sarah F. Gurev, Fadi Ghantous, Kelly P. Brock, Javier A. Jaimes, Nicole N. Thadani +18 more

Modeling suggests SARS-CoV-2 rebound after nirmatrelvir-ritonavir treatment is driven by target cell preservation coupled with incomplete viral clearance

Journal of Virology(2025)10.1128/jvi.01623-24

N/A

0DataRank · unranked

18 citations

Ruy M. Ribeiro, Gregory E. Edelstein, Julie Boucau, Rockib Uddin, Caitlin Marino +20 more

Two distinct durable human class-switched memory B cell populations are induced by vaccination and infection

Cell Reports(2025)10.1016/j.celrep.2025.115472

N/A

0DataRank · unranked

14 citations

Hang Liu, Jared Feldman, Jess Marbourg, Thomas V. Guy, Anson Hui +34 more

Virologic characteristics of SARS-CoV-2 infection across evolving Omicron subvariants

JCI Insight(2025)10.1172/jci.insight.192228

N/A

0DataRank · unranked

1 citations

Owen T. Glover, Caitlin Marino, Gregory E. Edelstein, Manish C. Choudhary, Yijia Li +17 more

Heterologous Surface Display Reveals Conserved Complement Inhibition and Functional Diversification of Borrelia burgdorferi Elp Proteins

Molecular Microbiology(2025)10.1111/mmi.15369

N/A

0DataRank · unranked

1 citations

Lara M. Matulina, Cameron MacIntyre, M. Amine Hassani, Sheila Thomas, Matteo Luban +6 more

Streamlined inactivation, amplification, and Cas13-based detection of SARS-CoV-2

Nature Communications(2020)10.1038/s41467-020-19097-x

N/A

0DataRank · unranked

522 citations

Catherine A. Freije, Alexandra C. Stanton, Brittany A. Petros, Chloe K. Boehm, Sameed M. Siddiqui +18 more

Cross-Neutralization of Distant Coronaviruses Strongly Correlates with Spike S2-Specific Antibodies from Immunocompetent and Immunocompromised Vaccinated SARS-CoV-2-Infected Patients

Vaccines(2025)10.3390/vaccines13090949

N/A

0DataRank · unranked

0 citations

Brooke M. Leeman, Patricia J. Botros, Joanna Folta, Dhiman Shahid, Anya I. Rocque +27 more

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187757

N/A

0DataRank · unranked

89 citations

Xue Wang, Kristen E. Pascal, Christopher H. Tomkins-Tinch, Thomas Nyalile, Yetao Wang +17 more

Integrated sample inactivation, amplification, and Cas13-based detection of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.119131

N/A

0DataRank · unranked

47 citations

Catherine A. Freije, Alexandra C. Stanton, Chloe K. Boehm, Brittany A. Petros, Sameed M. Siddiqui +14 more

Cerebral Microvascular Injury in Severe COVID-19

medRxiv(2020)10.1101/2020.07.21.20159376

N/A

0DataRank · unranked

41 citations

Matthew P. Frosch, Shibani S. Mukerji, Otto Rapalino, Mary D. Maher, Pamela W. Schaefer +18 more

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: A guide and case study in setting up an emergency-use, laboratory-developed molecular assay

medRxiv(2020)10.1101/2020.08.26.20157297

N/A

0DataRank · unranked

8 citations

Bennett Shaw, Damien Slater, Elizabeth H. Byrne, Yolanda Botti-Lodovico, Gordon Adams +28 more

Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis

mBio(2021)10.1128/mbio.01143-21

N/A

0DataRank · unranked

123 citations

Shibani S. Mukerji, Simon Ye, Michael J. Leone, Lisa M. Freimark, Daniel Park +16 more

Susceptibility-weighted imaging reveals cerebral microvascular injury in severe COVID-19

Journal of the Neurological Sciences(2021)10.1016/j.jns.2021.117308

N/A

0DataRank · unranked

89 citations

Matthew P. Frosch, Shibani S. Mukerji, Otto Rapalino, Mary D. Maher, Pamela W. Schaefer +18 more

Determining the Incidence of Asymptomatic SARS-CoV-2 Among Early Recipients of COVID-19 Vaccines (DISCOVER-COVID-19): A Prospective Cohort Study of Healthcare Workers Before, During and After Vaccination

Clinical Infectious Diseases(2021)10.1093/cid/ciab643

N/A

0DataRank · unranked

33 citations

Amy K. Barczak, Robert H. Goldstein, Brian C. Healy, Dianne M. Finkelstein, Delaney D Ding +21 more

Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows

Nature Microbiology(2021)10.1038/s41564-021-01019-2

N/A

0DataRank · unranked

17 citations

Erica Normandin, Matthew R. Bauer, Gordon Adams, Katherine Figueroa, Christine Loreth +19 more

Development of a qualitative real-time RT-PCR assay for the detection of SARS-CoV-2: a guide and case study in setting up an emergency-use, laboratory-developed molecular microbiological assay

Journal of Clinical Pathology(2021)10.1136/jclinpath-2020-207128

N/A

0DataRank · unranked

16 citations

Bennett Shaw, Damien Slater, Elizabeth H. Byrne, Yolanda Botti-Lodovico, Gordon Adams +28 more

Evidence of transmission from fully vaccinated individuals in a large outbreak of the SARS-CoV-2 Delta variant in Provincetown, Massachusetts

medRxiv(2021)10.1101/2021.10.20.21265137

N/A

0DataRank · unranked

9 citations

Lydia A. Krasilnikova, Gage K. Moreno, S. F. Schaffner, Johanna Vostok, Nicholas FitzGerald +75 more

Vaccine serologic responses among transplant patients associate with COVID-19 infection and T peripheral helper cells

medRxiv(2021)10.1101/2021.07.11.21260338

N/A

0DataRank · unranked

8 citations

Amy Li, Matteo Gentili, Cory A. Perugino, Zoe Weiss, Kathryn Bowman +9 more

Duration of viral shedding and culture positivity with post-vaccination breakthrough delta variant infections

medRxiv(2021)10.1101/2021.10.14.21264747

N/A

0DataRank · unranked

5 citations

Julie Boucau, Rebecca F. Gilbert, Rockib Uddin, Jonathan Luu, Sebastien Haneuse +15 more

Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants

Nature Medicine(2022)10.1038/s41591-022-01734-1

N/A

0DataRank · unranked

306 citations

Meilin Zhu, Catherine Hua, Juliane Weller, Marzieh Ezzaty Mirhashemi, Tien G. Nguyen +45 more