David S. Yu

Also affiliated with Bristol-Myers Squibb (United States)

Biochemistry, Genetics and Molecular BiologyPhysics and AstronomyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Quantitative proteomic analysis of the lysine acetylome reveals diverse SIRT2 substrates”.

Quantitative proteomic analysis of the lysine acetylome reveals diverse SIRT2 substrates

Scientific Reports(2022)10.1038/s41598-022-06793-5

N/A

0.810DataRank · unranked

21 citations

Eric B. Dammer, Duc M. Duong, Diana Danelia, Nicholas T. Seyfried, David S. Yu +1 more

PD-L1 deglycosylation promotes its nuclear translocation and accelerates DNA double-strand-break repair in cancer

Nature Communications(2024)10.1038/s41467-024-51242-8

N/A

0.789DataRank · unranked

30 citations

Bhakti Dwivedi, Jeffrey M. Switchenko, David S. Yu, Xingming Deng, Zhen Shu

EZH2 has a non-catalytic and PRC2-independent role in stabilizing DDB2 to promote nucleotide excision repair

Oncogene(2020)10.1038/s41388-020-1332-2

N/A

0.609DataRank · unranked

57 citations

Matthew Z. Madden, Dongkyoo Park, Elizabeth V. Minten, Priya Kapoor-Vazirani, Erica Werner +17 more

A retrospective study on the investigation of potential dosimetric benefits of online adaptive proton therapy for head and neck cancer

Journal of Applied Clinical Medical Physics(2024)10.1002/acm2.14308

N/A

0.241DataRank · unranked

4 citations

Duncan Bohannon, Zhen Tian, Yi-Nan Wang, Mark W. McDonald, David S. Yu +4 more

HELZ is a RNA-DNA helicase that resolves R loops to facilitate homologous recombination repair

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.14.571747

N/A

0.208DataRank · unranked

3 citations

Allyson E. Koyen, Sandip Kumar Rath, Bo Wu, Matthew Z. Madden, Yingzi Hou +25 more

ATR signaling controls the bystander responses of human chondrosarcoma cells by promoting RAD51-dependent DNA repair

International Journal of Radiation Biology(2024)10.1080/09553002.2024.2324479

N/A

0.165DataRank · unranked

2 citations

Hidemasa Kawamura, Hiroko Ikeda, Reiko T. Roppongi, Atsushi Shibata, Jiaxuan Hu +4 more

Adaptive Proton Therapy Using CBCT-Guided Digital Twins.

Physics in Medicine and Biology(2024)10.1088/1361-6560/ada684

N/A

0.104DataRank · unranked

1 citations

Zhen Tian, Richard L. J. Qiu, H Scott McGinnis, Duncan Bohannon, Pretesh Patel +6 more

Cross-modality 3D MRI synthesis via cycle-guided denoising diffusion probability model

Journal of Medical Imaging(2025)10.1117/1.jmi.12.6.064003

N/A

0.104DataRank · unranked

1 citations

Shaoyan Pan, Chih‐Wei Chang, Richard L. J. Qiu, Junbo Peng, Tonghe Wang +5 more

Synthetic CT Generation from MRI using 3D Transformer-based Denoising Diffusion Model

arXiv (Cornell University)(2023)10.48550/arxiv.2305.19467

N/A

0DataRank · unranked

10 citations

Elham Abouei, Jacob Wynne, Tonghe Wang, Richard L. J. Qiu, Yuheng Li +8 more

CBCT-Based Synthetic CT Image Generation Using Conditional Denoising Diffusion Probabilistic Model

arXiv (Cornell University)(2023)10.48550/arxiv.2303.02649

N/A

0DataRank · unranked

7 citations

Richard L. J. Qiu, Jacob Wynne, Chih‐Wei Chang, Shaoyan Pan, Tonghe Wang +6 more

The RNA helicase DDX1 associates with the nuclear RNA exosome and modulates R-loops

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.17.537228

N/A

0DataRank · unranked

3 citations

Sara W. Leung, Ramona Haji‐Seyed‐Javadi, Yingzi Hou, David S. Yu, Homa Ghalei +4 more

The putative RNA helicase DDX1 associates with the nuclear RNA exosome and modulates RNA/DNA hybrids (R-loops)

Journal of Biological Chemistry(2024)10.1016/j.jbc.2024.105646

N/A

0DataRank · unranked

17 citations

Sara W. Leung, Ramona Haji‐Seyed‐Javadi, Yingzi Hou, David S. Yu, Homa Ghalei +4 more

Streamlined pin‐ridge‐filter design for single‐energy proton FLASH planning

Medical Physics(2024)10.1002/mp.16939

N/A

0DataRank · unranked

18 citations

Jun Zhou, Chih‐Wei Chang, Yinan Wang, Pretesh Patel, David S. Yu +3 more

Unsupervised Bayesian generation of synthetic CT from CBCT using patient‐specific score‐based prior

Medical Physics(2024)10.1002/mp.17572

N/A

0DataRank · unranked

8 citations

Yuan Gao, Chih‐Wei Chang, Richard L. J. Qiu, Tonghe Wang, Aparna H. Kesarwala +5 more

Feasibility study of modularized pin ridge filter implementation in proton FLASH planning for liver stereotactic ablative body radiotherapy

Physics in Medicine and Biology(2024)10.1088/1361-6560/ad95d6

N/A

0DataRank · unranked

3 citations

Xiaofeng Yang, Jufri Setianegara, Yinan Wang, Yuan Gao, David S. Yu +3 more

T1‐contrast enhanced MRI generation from multi‐parametric MRI for glioma patients with latent tumor conditioning

Medical Physics(2024)10.1002/mp.17600

N/A

0DataRank · unranked

5 citations

Mojtaba Safari, Richard L. J. Qiu, David S. Yu, Hui‐Kuo G. Shu, Hui Mao +2 more

SAMHD1 expression contributes to doxorubicin resistance and predicts survival outcomes in diffuse large B-cell lymphoma patients

NAR Cancer(2024)10.1093/narcan/zcae007

N/A

0DataRank · unranked

3 citations

Dominique Monroe, Ashley Schlafstein, Allison E. Withers, E Thompson, Diana Danelia +20 more

Using Modularized Pin Ridge Filter in Proton FLASH Planning for Liver Stereotactic Ablative Body Radiotherapy

PubMed(2024)10.48550/arxiv.2406.02718

N/A

0DataRank · unranked

0 citations

Xiaofeng Yang, Yi-Nan Wang, David S. Yu, Pretesh Patel, Jun Zhou +1 more

T1-contrast Enhanced MRI Generation from Multi-parametric MRI for Glioma Patients with Latent Tumor Conditioning

arXiv (Cornell University)(2024)10.48550/arxiv.2409.01622

N/A

0DataRank · unranked

0 citations

Mojtaba Safari, Richard L. J. Qiu, David S. Yu, Hui‐Kuo G. Shu, Hui Mao +2 more

Optimization-Based Image Reconstruction Regularized with Inter-Spectral Structural Similarity for Limited-Angle Dual-Energy Cone-Beam CT

arXiv (Cornell University)(2024)10.48550/arxiv.2409.04674

N/A

0DataRank · unranked

0 citations

Tonghe Wang, Xie, Huiqiao, Richard L. J. Qiu, Chih‐Wei Chang, Justin Roper +4 more

Automatic medical imaging segmentation via self-supervising large-scale convolutional neural networks

Radiotherapy and Oncology(2025)10.1016/j.radonc.2025.110711

N/A

0DataRank · unranked

7 citations

Jacob Wynne, Yizhou Wu, Richard L. J. Qiu, Sibo Tian, Tonghe Wang +4 more

A physics‐informed deep learning model for MRI brain motion correction

Medical Physics(2025)10.1002/mp.70197

N/A

0DataRank · unranked

4 citations

Shansong Wang, Zach Eidex, Richard Qiu, Chih‐Wei Chang, David S. Yu +2 more

Optimization-based image reconstruction regularized with inter-spectral structural similarity for limited-angle dual-energy cone-beam CT

Physics in Medicine and Biology(2025)10.1088/1361-6560/ade843

N/A

0DataRank · unranked

1 citations

Tonghe Wang, Huiqiao Xie, Richard L. J. Qiu, Chih‐Wei Chang, Justin Roper +4 more

OpenVocabCT: Toward Universal Text-Driven CT Image Segmentation

IEEE Transactions on Medical Imaging(2025)10.1109/tmi.2025.3646046

N/A

0DataRank · unranked

1 citations

Yuxiang Lai, Maria Thor, Deborah Marshall, Zachary S. Buchwald, David S. Yu +2 more

Clinically Interpretable Survival Risk Stratification in Head and Neck Cancer Using Bayesian Networks and Markov Blankets

International Journal of Radiation Oncology*Biology*Physics(2025)10.1016/j.ijrobp.2025.09.063

N/A

0DataRank · unranked

0 citations

Ibrahim Chamseddine, Xiaohan Yuan, Sibo Tian, Richard L. J. Qiu, Jun Zhou +6 more

Replication stress and FOXM1 drive radiation induced genomic instability and cell transformation

PLoS ONE(2020)10.1371/journal.pone.0235998

N/A

0DataRank · unranked

10 citations

David S. Yu, Paul W. Doetsch, Erica Werner, Zhentian Li

SIRT2 promotes BRCA1-BARD1 heterodimerization through deacetylation

Cell Reports(2021)10.1016/j.celrep.2021.108921

N/A

0DataRank · unranked

33 citations

Priya Kapoor-Vazirani, Chunyang Li, Hui Zhang, Kamakshi Balakrishnan, David S. Yu +1 more

Structural and functional characterization explains loss of dNTPase activity of the cancer-specific R366C/H mutant SAMHD1 proteins

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.101170

N/A

0DataRank · unranked

12 citations

Joshua Temple, Caitlin Shepard, Adrian Oo, Fidel Arizaga, Priya Kapoor-Vazirani +10 more

SAMHD1 deacetylation by SIRT1 promotes DNA end resection by facilitating DNA binding at double-strand breaks

Nature Communications(2022)10.1038/s41467-022-34578-x

N/A

0DataRank · unranked

27 citations

Sandip Kumar Rath, Xu Liu, Zhen Shu, Nicole E. Bowen, Yitong Chen +12 more

Synthetic CT generation from MRI using 3D transformer‐based denoising diffusion model

Medical Physics(2023)10.1002/mp.16847

N/A

0DataRank · unranked

124 citations

Elham Abouei, Jacob Wynne, Chih‐Wei Chang, Tonghe Wang, Richard L. J. Qiu +8 more

CBCT‐Based synthetic CT image generation using conditional denoising diffusion probabilistic model

Medical Physics(2023)10.1002/mp.16704

N/A

0DataRank · unranked

109 citations

Richard L. J. Qiu, Jacob Wynne, Chih‐Wei Chang, Shaoyan Pan, Tonghe Wang +6 more

DNA-PK is activated by SIRT2 deacetylation to promote DNA double-strand break repair by non-homologous end joining

Nucleic Acids Research(2023)10.1093/nar/gkad549

N/A

0DataRank · unranked

23 citations

Priya Kapoor-Vazirani, Ganji Purnachandra Nagaraju, Hui Zhang, Sandip Kumar Rath, Nho Cong Luong +20 more