Brendon M. Baker

Biochemistry, Genetics and Molecular BiologyEngineeringMaterials ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “Microengineered 3D pulmonary interstitial mimetics highlight a critical role for matrix degradation in myofibroblast differentiation”.

Microengineered 3D pulmonary interstitial mimetics highlight a critical role for matrix degradation in myofibroblast differentiation

Science Advances(2020)10.1126/sciadv.abb5069

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0DataRank · unranked

107 citations

Katarina M. DiLillo, Makenzee R. Smith, Christopher D. Davidson, Ritika Parikh, M.S. Said +6 more

Immobilization after injury alters extracellular matrix and stem cell fate

Journal of Clinical Investigation(2020)10.1172/jci136142

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0DataRank · unranked

77 citations

Nicole Patel, Chase A. Pagani, Simone Marini, Karthik Padmanabhan, Daniel L. Matera +16 more

Myofibroblast activation in synthetic fibrous matrices composed of dextran vinyl sulfone

Acta Biomaterialia(2020)10.1016/j.actbio.2020.01.009

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0DataRank · unranked

59 citations

Danica Kristen P. Jayco, Daniel L. Matera, Samuel J. DePalma, Harrison L. Hiraki, William Y. Wang +2 more

Optical coherence tomography and fluorescence microscopy dual-modality imaging for in vivo single-cell tracking with nanowire lasers

Biomedical Optics Express(2020)10.1364/boe.395369

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18 citations

Wei Zhang, William Y. Wang, Xiaoqin Wu, Yanxiu Li, Xiaotian Tan +6 more

Microenvironmental determinants of organized iPSC-cardiomyocyte tissues on synthetic fibrous matrices

Biomaterials Science(2020)10.1039/d0bm01247e

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44 citations

Christopher D. Davidson, Austin E. Stis, Adam Helms, Brendon M. Baker, Samuel J. DePalma

Stable and transient bubble formation in acoustically-responsive scaffolds by acoustic droplet vaporization: theory and application in sequential release

Ultrasonics Sonochemistry(2020)10.1016/j.ultsonch.2020.105430

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41 citations

Oliver D. Kripfgans, William Y. Wang, Brendon M. Baker, J. Brian Fowlkes, Mario L. Fabiilli +1 more

Direct comparison of angiogenesis in natural and synthetic biomaterials reveals that matrix porosity regulates endothelial cell invasion speed and sprout diameter

Acta Biomaterialia(2021)10.1016/j.actbio.2021.08.038

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0DataRank · unranked

57 citations

Robert Kent, Stephanie Huang, Evan H. Jarman, Eve H. Shikanov, Christopher D. Davidson +9 more

Physiologic biomechanics enhance reproducible contractile development in a stem cell derived cardiac muscle platform

Nature Communications(2021)10.1038/s41467-021-26496-1

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0DataRank · unranked

44 citations

Samuel J. DePalma, Yan-Ting Zhao, Adela Capilnasiu, Yu‐Wei Wu, Brynn Elder +14 more

Magnetic Alignment of Electrospun Fiber Segments Within a Hydrogel Composite Guides Cell Spreading and Migration Phenotype Switching

Frontiers in Bioengineering and Biotechnology(2021)10.3389/fbioe.2021.679165

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40 citations

Daniel L. Matera, Michael Rose, Robert Kent, Connor W. Todd, Mark E. Stout +6 more

The Role of Rho GTPases During Fibroblast Spreading, Migration, and Myofibroblast Differentiation in 3D Synthetic Fibrous Matrices

Cellular and Molecular Bioengineering(2021)10.1007/s12195-021-00698-5

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20 citations

Alexander T. Lee, Harrison L. Hiraki, Brendon M. Baker, Daniel L. Matera

Fresh and cryopreserved ovarian tissue from deceased young donors yields viable follicles

F&S Science(2021)10.1016/j.xfss.2021.06.003

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8 citations

Colleen L. Flanagan, Margaret A. Brunette, Andrea Jones, Brendon M. Baker, Sherman J. Silber +2 more

Spatiotemporal control of myofibroblast activation in acoustically-responsive scaffolds via ultrasound-induced matrix stiffening

Acta Biomaterialia(2021)10.1016/j.actbio.2021.11.020

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20 citations

Mitra Aliabouzar, Carole Quesada, Brendon M. Baker, Renny T. Franceschi, Andrew J. Putnam +2 more

Aligned Networks of Engineered Fibrillar Fibronectin Guide Cellular Orientation and Motility

Small Structures(2021)10.1002/sstr.202000137

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13 citations

Ayşe J. Muñiz, Michael S. Jones, Do Hoon Kim, Johanna M. Buschhaus, Brock A. Humphries +7 more

Mechanical intercellular communication via matrix-borne cell force transmission during vascular network formation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456669

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5 citations

Samuel J. DePalma, William Y. Wang, Jordan L. Kamen, Danica Kristen P. Jayco, Brendon M. Baker +1 more

Fiber density and matrix stiffness modulate distinct cell migration modes in a 3D stroma mimetic composite hydrogel

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433190

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4 citations

Daniel L. Matera, William Y. Wang, Alexander A. Zarouk, Anna E. Argento, Johanna M. Buschhaus +4 more

Biomechanics and Myofibrillar Alignment Enhance Contractile Development and Reproducibility in Stem Cell Derived Cardiac Muscle

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.23.445330

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0DataRank · unranked

2 citations

Yan-Ting Zhao, Samuel J. DePalma, Adela Capilnasiu, Yu‐Wei Wu, Brynn Elder +12 more

The living interface between synthetic biology and biomaterial design

Nature Materials(2022)10.1038/s41563-022-01231-3

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220 citations

Eric A. Appel, Paul D. Ashby, Brendon M. Baker, Elisa Franco, Luo Gu +16 more

Fiber density and matrix stiffness modulate distinct cell migration modes in a 3D stroma mimetic composite hydrogel

Acta Biomaterialia(2022)10.1016/j.actbio.2022.09.043

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0DataRank · unranked

41 citations

Daniel L. Matera, William Y. Wang, Eashan S. Prabhu, Zenghao Zhang, Firaol S. Midekssa +7 more

Physical and Soluble Cues Enhance Tendon Progenitor Cell Invasion into Injectable Synthetic Hydrogels

Advanced Functional Materials(2022)10.1002/adfm.202207556

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0DataRank · unranked

25 citations

M.S. Said, Megan E. Busch, Ethan R. Poupard, Ariane Tsai, Jingyi Xia +11 more

Extracellular matrix-templating fibrous hydrogels promote ovarian tissue remodeling and oocyte growth

Bioactive Materials(2023)10.1016/j.bioactmat.2023.10.001

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32 citations

Emily E. Thomas, Daniel L. Matera, Brendon M. Baker, Ariella Shikanov, Claire E. Nason-Tomaszewski

Mechanical Intercellular Communication via Matrix‐Borne Cell Force Transmission During Vascular Network Formation

Advanced Science(2023)10.1002/advs.202306210

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0DataRank · unranked

23 citations

Firaol S. Midekssa, Samuel J. DePalma, Jordan L. Kamen, William Y. Wang, Danica Kristen P. Jayco +3 more

Rapid Magnetically Directed Assembly of Pre‐Patterned Capillary‐Scale Microvessels

Advanced Functional Materials(2023)10.1002/adfm.202203715

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14 citations

Harrison L. Hiraki, Michał Wojasiński, Zenghao Zhang, Shuyi Xi, Amanda S. Bluem +5 more

Building‐Block Size Mediates Microporous Annealed Particle Hydrogel Tube Microenvironment Following Spinal Cord Injury

Advanced Healthcare Materials(2023)10.1002/adhm.202302498

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13 citations

Robert Kent, Michael N. Saunders, Samantha R Schwartz, Brooke M. Smiley, Sarah E. Hocevar +8 more

Integrating mechanical cues with engineered platforms to explore cardiopulmonary development and disease

iScience(2023)10.1016/j.isci.2023.108472

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12 citations

Madeline K. Eiken, Samuel J. DePalma, Adam Helms, Rachel L. Zemans, Jason R. Spence +3 more

An adaptive and versatile method to quantitate and characterize collective cell migration behaviors on complex surfaces

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1106653

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6 citations

Harrison L. Hiraki, Brendon M. Baker, Carole A. Parent, Kristen Loesel

Matrix architecture and mechanics regulate myofibril organization, costamere assembly, and contractility of engineered myocardial microtissues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.20.563346

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0DataRank · unranked

5 citations

Javiera Jillberto, Austin E. Stis, Darcy D. Huang, Jason Lo, Christopher D. Davidson +9 more

Manipulation of the nucleoscaffold potentiates cellular reprogramming kinetics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.12.532246

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1 citations

André Monteiro da Rocha, Isabel G. Newton, Anna Shcherbina, Sing Wan Wong, Paula Fraczek +8 more

Sulfide oxidation promotes hypoxic angiogenesis and neovascularization

Physical Therapy Korea(2023)10.1101/2023.03.14.532677

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0DataRank · unranked

0 citations

Victor Vitvitsky, Proud Seth, Harrison L. Hiraki, Hannah N. Bell, Anthony Andren +6 more

Induced pluripotent stem cell-derived cardiomyocyte in vitro models: benchmarking progress and ongoing challenges

Nature Methods(2024)10.1038/s41592-024-02480-7

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0DataRank · unranked

36 citations

Samuel J. DePalma, Maggie E. Jewett, M. Çağatay Karakan, Yih-Mei Lin, Paria Mir Hashemian +16 more

Sulfide oxidation promotes hypoxic angiogenesis and neovascularization

Nature Chemical Biology(2024)10.1038/s41589-024-01583-8

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0DataRank · unranked

32 citations

Victor Vitvitsky, Apichaya Sethaudom, Rashi Singhal, Sumeet Solanki, Sydney Alibeckoff +8 more

A Protein‐Adsorbent Hydrogel with Tunable Stiffness for Tissue Culture Demonstrates Matrix‐Dependent Stiffness Responses

Advanced Functional Materials(2024)10.1002/adfm.202309567

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24 citations

Megan E. Griebel, Marina Uroz, Saniya Yesmin Bubli, Keith A. Gagnon, Britta Trappmann +4 more

Ultrasound-generated bubbles enhance osteogenic differentiation of mesenchymal stromal cells in composite collagen hydrogels

Bioactive Materials(2024)10.1016/j.bioactmat.2024.09.018

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11 citations

Mitra Aliabouzar, Carole Quesada, Anjali Chiravuri, Aidan Macpherson, Abigail Pinch +10 more

MicroBundleCompute: Automated segmentation, tracking, and analysis of subdomain deformation in cardiac microbundles

PLoS ONE(2024)10.1371/journal.pone.0298863

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9 citations

Javiera Jilberto, M. Çağatay Karakan, Xining Gao, Samuel J. DePalma, Shoshana L. Das +7 more

CCL2/CCR2 Signalling in Mesenchymal Stem/Progenitor Cell Recruitment and Fracture Healing in Mice

Journal of Cellular and Molecular Medicine(2024)10.1111/jcmm.70300

N/A

0DataRank · unranked

6 citations

Amy J. Koh, Robert Kent, Kaira Bhutada, Fatima Wasi, Leon Wagner +5 more

Engineered Microenvironmental Cues from Fiber‐Reinforced Hydrogel Composites Drive Tenogenesis and Aligned Collagen Deposition

Advanced Healthcare Materials(2024)10.1002/adhm.202400529

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0DataRank · unranked

9 citations

Maggie E. Jewett, Trevor P. Buck, M.S. Said, LeeAnn A. Hold, Eileen A. Crawford +5 more

Local photo-crosslinking of native tissue matrix regulates cell function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.10.607417

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5 citations

Matthew L. Tan, Jackson Gabbard, Yuchen Liu, Michael M. Hu, Miriam Stevens +6 more

MicroBundlePillarTrack: A Python package for automated segmentation, tracking, and analysis of pillar deflection in cardiac microbundles

arXiv (Cornell University)(2024)10.48550/arxiv.2405.11096

N/A

0DataRank · unranked

0 citations

Xining Gao, Samuel J. DePalma, Jourdan K. Ewoldt, Miranda C. Wang, Shoshana L. Das +6 more

Local photocrosslinking of native tissue matrix regulates lung epithelial cell mechanosensing and function

Nature Materials(2025)10.1038/s41563-025-02329-0

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0DataRank · unranked

13 citations

Matthew L. Tan, Yuchen Liu, Jackson Gabbard, Esther Gao, Avinava Roy +13 more

Clickable PEG-norbornene microgels support suspension bioprinting and microvascular assembly

Acta Biomaterialia(2025)10.1016/j.actbio.2025.06.006

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0DataRank · unranked

11 citations

Lucia S. Choi, Nicole E. Friend, Atticus J. McCoy, Firaol S. Midekssa, Michael Hu +6 more

Semi-synthetic fibrous fibrin composites promote 3D microvascular assembly, survival, and host integration of endothelial cells without mesenchymal cell support

Bioactive Materials(2025)10.1016/j.bioactmat.2025.02.029

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0DataRank · unranked

3 citations

Christopher D. Davidson, Megan E. Wieger, Jordan L. Kamen, Kaylin M. Hanna, Danica Kristen P. Jayco +7 more

Manipulation of the nucleoscaffold potentiates cellular reprogramming kinetics

PNAS Nexus(2025)10.1093/pnasnexus/pgaf307

N/A

0DataRank · unranked

2 citations

Camila Vesga-Castro, André Monteiro da Rocha, Isabel G. Newton, Anna Shcherbina, Sing Wan Wong +9 more

Desmoplakin Haploinsu/iciency Underlies Cell-Cell Adhesion Failure in DSP Cardiomyopathy and is Rescued by Transcriptional Activation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.01.657304

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0DataRank · unranked

2 citations

K. Jin, Brianna Ferguson, Yao-Chang Tsan, Samuel J. DePalma, Joshua K. Meisner +7 more